Wall clock time and date at job start Tue Mar 31 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38338 * 119.91877 * 2 1 4 4 C 1.38024 * 120.10180 * 180.27490 * 3 2 1 5 5 C 1.50700 * 120.03756 * 179.72170 * 4 3 2 6 6 C 1.39110 * 119.92747 * 359.46852 * 4 3 2 7 7 N 1.39299 * 120.08445 * 180.27441 * 6 4 3 8 8 C 1.36850 * 120.00243 * 84.40915 * 7 6 4 9 9 H 1.07998 * 119.99676 * 355.11915 * 8 7 6 10 10 C 1.38790 * 120.00544 * 175.12529 * 8 7 6 11 11 N 1.31597 * 119.99789 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00479 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.46909 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47180 * 119.99545 * 12 10 8 15 15 H 1.48503 * 109.47180 * 240.00010 * 12 10 8 16 16 C 1.39047 * 119.83425 * 0.52758 * 6 4 3 17 17 C 1.50704 * 120.05198 * 179.76886 * 16 6 4 18 18 C 1.38163 * 119.89319 * 359.74814 * 16 6 4 19 19 Br 1.89107 * 119.96081 * 180.02562 * 18 16 6 20 20 H 1.09000 * 109.47223 * 89.99918 * 1 2 3 21 21 H 1.09001 * 109.47255 * 210.00359 * 1 2 3 22 22 H 1.09001 * 109.47096 * 330.00861 * 1 2 3 23 23 H 1.08000 * 119.94310 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47096 * 91.69857 * 5 4 3 25 25 H 1.08995 * 109.47178 * 211.69482 * 5 4 3 26 26 H 1.08995 * 109.46928 * 331.70074 * 5 4 3 27 27 H 0.96997 * 120.00126 * 264.40403 * 7 6 4 28 28 H 0.96998 * 120.00034 * 180.02562 * 11 10 8 29 29 H 1.08995 * 109.46689 * 269.97667 * 17 16 6 30 30 H 1.08999 * 109.46642 * 29.98134 * 17 16 6 31 31 H 1.08998 * 109.46660 * 149.97800 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1990 0.0000 4 6 3.5772 1.2034 -0.0057 5 6 4.3274 2.5105 -0.0121 6 6 4.2751 0.0001 -0.0003 7 7 5.6681 0.0008 -0.0003 8 6 6.3524 0.1218 1.1787 9 1 5.8152 0.2959 2.0993 10 6 7.7365 0.0211 1.1913 11 7 8.3910 -0.1913 0.0696 12 14 8.6705 0.1871 2.8005 13 1 7.7098 0.4209 3.9086 14 1 9.4333 -1.0600 3.0610 15 1 9.6108 1.3331 2.7112 16 6 3.5788 -1.2034 -0.0003 17 6 4.3299 -2.5100 0.0003 18 6 2.1972 -1.1996 -0.0003 19 35 1.2482 -2.8353 0.0005 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.6547 2.1330 -0.0004 24 1 4.5389 2.8129 1.0136 25 1 5.2643 2.3890 -0.5555 26 1 3.7215 3.2747 -0.4986 27 1 6.1532 -0.0847 -0.8359 28 1 9.3584 -0.2621 0.0785 29 1 4.5109 -2.8253 -1.0272 30 1 5.2825 -2.3811 0.5141 31 1 3.7394 -3.2682 0.5145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:54 Heat of formation + Delta-G solvation = 23.740491 kcal Electronic energy + Delta-G solvation = -14839.072523 eV Core-core repulsion = 12359.331406 eV Total energy + Delta-G solvation = -2479.741117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.29000 -35.18276 -33.27881 -32.44794 -30.21372 -30.02014 -27.39941 -25.86134 -25.47673 -23.25352 -20.15821 -19.70353 -17.40758 -16.05650 -15.75673 -14.32314 -14.05792 -13.80356 -13.37561 -13.00229 -12.66098 -12.56265 -12.50433 -12.34398 -12.07880 -11.25180 -11.17161 -11.07875 -11.00379 -10.73519 -10.64291 -10.28851 -10.04207 -9.90724 -9.57151 -9.17127 -7.95092 -7.71131 -7.26561 -5.94355 -3.29129 1.70053 1.90062 2.09318 3.34576 3.41736 3.43281 4.13164 4.48479 5.16333 5.21058 5.41322 5.50828 5.53277 5.69612 5.78719 5.89055 6.01333 6.13647 6.20452 6.31442 6.33165 6.36388 6.52026 6.70556 6.83736 6.96072 7.03982 7.37759 7.41129 7.67948 8.28668 9.33662 9.97808 10.16553 11.26306 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.025238 B = 0.006194 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.151721 B = 4519.446526 C = 5239.838159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.086 4.086 5 C -0.099 4.099 6 C 0.206 3.794 7 N -0.677 5.677 8 C -0.245 4.245 9 H 0.074 0.926 10 C -0.002 4.002 11 N -0.925 5.925 12 Si 0.909 3.091 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.289 1.289 16 C -0.071 4.071 17 C -0.113 4.113 18 C -0.093 4.093 19 Br -0.076 7.076 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.118 0.882 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.395 0.605 28 H 0.258 0.742 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 -1.623 -1.386 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.089 4.089 5 C -0.156 4.156 6 C 0.107 3.893 7 N -0.315 5.315 8 C -0.374 4.374 9 H 0.092 0.908 10 C -0.199 4.199 11 N -0.571 5.571 12 Si 0.739 3.261 13 H -0.203 1.203 14 H -0.216 1.216 15 H -0.216 1.216 16 C -0.076 4.076 17 C -0.170 4.170 18 C -0.172 4.172 19 Br 0.009 6.991 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.136 0.864 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.232 0.768 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.066 -2.235 -1.214 15.279 hybrid contribution 0.958 0.418 0.581 1.196 sum -14.108 -1.816 -0.634 14.239 Atomic orbital electron populations 1.20852 0.91335 1.02755 1.02167 1.19497 0.95612 0.91599 1.01888 1.20629 0.93443 0.96348 1.03820 1.20802 0.93178 0.96663 0.98251 1.20575 1.00216 0.92480 1.02299 1.17329 0.87241 0.89591 0.95149 1.39796 0.97444 1.86387 1.07881 1.19155 0.89042 1.42944 0.86301 0.90845 1.24775 0.96394 1.01543 0.97195 1.69653 1.07523 1.54932 1.25022 0.86097 0.79868 0.77401 0.82719 1.20326 1.21564 1.21609 1.20632 0.90993 0.97541 0.98427 1.20802 1.01500 0.92650 1.02066 1.21449 0.93590 0.89848 1.12353 1.96481 1.75108 1.29627 1.97843 0.91430 0.91159 0.91815 0.86374 0.91520 0.90357 0.93264 0.76764 0.93153 0.91851 0.89146 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.55 36.01 0.34 -1.09 16 2 C -0.08 -1.35 5.89 -104.53 -0.62 -1.96 16 3 C -0.12 -2.01 9.34 -39.62 -0.37 -2.38 16 4 C -0.09 -1.62 5.90 -104.38 -0.62 -2.23 16 5 C -0.10 -1.74 9.67 36.01 0.35 -1.39 16 6 C 0.21 4.37 5.83 -83.84 -0.49 3.88 16 7 N -0.68 -16.29 3.29 -9.60 -0.03 -16.32 16 8 C -0.25 -6.43 9.55 -15.11 -0.14 -6.58 16 9 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 10 C 0.00 -0.05 5.50 -17.45 -0.10 -0.15 16 11 N -0.92 -26.33 13.06 55.49 0.72 -25.60 16 12 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.07 -1.40 5.90 -104.35 -0.62 -2.02 16 17 C -0.11 -2.16 9.31 36.01 0.34 -1.83 16 18 C -0.09 -1.63 6.21 -39.55 -0.25 -1.88 16 19 Br -0.08 -1.13 29.85 -68.01 -2.03 -3.16 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.07 0.87 6.63 -51.93 -0.34 0.52 16 22 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.08 1.54 7.53 -51.93 -0.39 1.15 16 26 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 27 H 0.39 10.07 8.03 -40.82 -0.33 9.75 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.97 7.23 -51.93 -0.38 1.60 16 31 H 0.06 1.05 6.64 -51.93 -0.34 0.70 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -27.21 280.55 -8.16 -35.37 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.86 Total: 6.61 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.16 Total: -17.63 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.69 Total: -41.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -2.03 Total: -3.16 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.21 -8.16 -35.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.112 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds