Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 C 1.50705 * 109.46795 * 119.99851 * 2 1 3 5 5 C 1.38343 * 119.94724 * 299.99988 * 4 2 1 6 6 C 1.38405 * 120.16646 * 179.97438 * 5 4 2 7 7 Br 1.89098 * 119.96389 * 180.02562 * 6 5 4 8 8 C 1.38159 * 120.06956 * 0.02562 * 6 5 4 9 9 C 1.39048 * 119.90050 * 0.02562 * 8 6 5 10 10 N 1.39299 * 120.08286 * 179.97438 * 9 8 6 11 11 C 1.36855 * 120.00161 * 359.97438 * 10 9 8 12 12 H 1.08002 * 119.99691 * 0.02562 * 11 10 9 13 13 C 1.38789 * 119.99739 * 180.02562 * 11 10 9 14 14 N 1.31594 * 120.00524 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99534 * 179.72577 * 13 11 10 16 16 H 1.48501 * 109.47087 * 270.27540 * 15 13 11 17 17 H 1.48497 * 109.47017 * 30.27690 * 15 13 11 18 18 H 1.48496 * 109.46733 * 150.28012 * 15 13 11 19 19 C 1.38032 * 119.95290 * 120.27675 * 4 2 1 20 20 H 1.08997 * 109.46934 * 300.00305 * 1 2 3 21 21 H 1.08997 * 109.47022 * 60.00018 * 1 2 3 22 22 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47190 * 239.99220 * 2 1 3 24 24 H 1.09003 * 109.46840 * 299.99539 * 3 2 1 25 25 H 1.08997 * 109.47376 * 59.99965 * 3 2 1 26 26 H 1.08996 * 109.46695 * 180.02562 * 3 2 1 27 27 H 1.07997 * 119.91601 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.05051 * 180.02562 * 8 6 5 29 29 H 0.97001 * 120.00135 * 180.02562 * 10 9 8 30 30 H 0.97005 * 119.99699 * 359.71961 * 14 13 11 31 31 H 1.08002 * 120.03438 * 0.02562 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6974 -0.2368 2.4865 6 6 2.1558 -0.8860 3.6196 7 35 1.6939 -0.2340 5.3335 8 6 2.9504 -2.0098 3.4999 9 6 3.2896 -2.4877 2.2389 10 7 4.0910 -3.6202 2.1138 11 6 4.5460 -4.2636 3.2327 12 1 4.2833 -3.8936 4.2127 13 6 5.3449 -5.3917 3.1079 14 7 5.6654 -5.8422 1.9137 15 14 5.9721 -6.2655 4.6352 16 1 7.2774 -5.6829 5.0379 17 1 4.9932 -6.0970 5.7390 18 1 6.1445 -7.7111 4.3427 19 6 2.8305 -1.8293 1.1028 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6768 1.9563 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.0768 0.6417 2.5829 28 1 3.3075 -2.5164 4.3843 29 1 4.3273 -3.9523 1.2336 30 1 5.3398 -5.3883 1.1206 31 1 3.0954 -2.1953 0.1218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = 7.465394 kcal Electronic energy + Delta-G solvation = -14431.199613 eV Core-core repulsion = 11950.752755 eV Total energy + Delta-G solvation = -2480.446858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99443 -36.29065 -34.37292 -32.11864 -30.60909 -28.50325 -27.69621 -26.95293 -24.71965 -22.42785 -21.36366 -19.50199 -17.82910 -16.49259 -15.79994 -14.73637 -14.41240 -14.02603 -13.79285 -13.36149 -13.13285 -12.78975 -12.53973 -12.04370 -11.91127 -11.38387 -11.23704 -11.00913 -10.92233 -10.78406 -10.47819 -10.34546 -10.21627 -9.77767 -9.74268 -9.66959 -8.74106 -7.93411 -6.96863 -6.93755 -3.88990 2.02515 2.28058 2.33571 3.22660 3.27242 3.40213 4.11038 4.42793 4.85470 5.07083 5.08847 5.17829 5.44735 5.72926 5.77278 5.89240 5.96657 5.99787 6.01365 6.10892 6.28172 6.40274 6.43516 6.59667 6.66555 7.06263 7.19037 7.32850 7.35003 7.69633 7.95486 8.38327 9.18038 9.20138 10.45481 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.006597 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.127534 B = 4243.150582 C = 5849.508114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.015 4.015 5 C -0.214 4.214 6 C -0.017 4.017 7 Br -0.090 7.090 8 C -0.196 4.196 9 C 0.216 3.784 10 N -0.570 5.570 11 C -0.382 4.382 12 H 0.099 0.901 13 C -0.010 4.010 14 N -0.890 5.890 15 Si 1.091 2.909 16 H -0.282 1.282 17 H -0.281 1.281 18 H -0.278 1.278 19 C -0.228 4.228 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.384 0.616 30 H 0.265 0.735 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 10.714 0.877 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.017 4.017 5 C -0.238 4.238 6 C -0.097 4.097 7 Br -0.005 7.005 8 C -0.222 4.222 9 C 0.094 3.906 10 N -0.173 5.173 11 C -0.512 4.512 12 H 0.117 0.883 13 C -0.214 4.214 14 N -0.526 5.526 15 Si 0.916 3.084 16 H -0.208 1.208 17 H -0.207 1.207 18 H -0.204 1.204 19 C -0.253 4.253 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.219 0.781 30 H 0.076 0.924 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.665 9.392 2.211 11.727 hybrid contribution -0.667 0.960 -1.303 1.751 sum -7.332 10.353 0.908 12.718 Atomic orbital electron populations 1.21818 0.94802 1.01841 1.01310 1.20057 0.95577 0.95753 0.95768 1.21818 1.01219 0.95425 1.01309 1.19138 0.95302 0.93972 0.93256 1.20006 1.09651 1.03746 0.90418 1.21193 1.01637 0.98026 0.88877 1.96515 1.92752 1.87649 1.23538 1.20318 1.05957 0.98989 0.96917 1.17554 0.92117 0.87984 0.92961 1.41000 1.44725 1.23201 1.08364 1.20617 1.31549 1.11187 0.87811 0.88297 1.26565 0.95377 0.95208 1.04220 1.70921 1.42932 1.40818 0.97890 0.83121 0.76476 0.76425 0.72375 1.20845 1.20695 1.20370 1.20205 1.08179 1.00612 0.96270 0.92442 0.93065 0.92651 0.91043 0.93072 0.92436 0.92651 0.87316 0.85765 0.78133 0.92377 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.01 37.16 0.33 -1.40 16 2 C -0.05 -0.73 3.09 -91.77 -0.28 -1.02 16 3 C -0.14 -1.73 9.01 37.16 0.33 -1.40 16 4 C -0.01 -0.25 4.78 -104.66 -0.50 -0.75 16 5 C -0.21 -3.82 8.45 -39.48 -0.33 -4.16 16 6 C -0.02 -0.34 6.22 -39.55 -0.25 -0.58 16 7 Br -0.09 -1.49 33.70 -68.01 -2.29 -3.78 16 8 C -0.20 -4.26 9.04 -39.31 -0.36 -4.61 16 9 C 0.22 4.81 6.62 -83.85 -0.55 4.25 16 10 N -0.57 -13.77 5.43 -9.60 -0.05 -13.82 16 11 C -0.38 -9.86 9.56 -15.11 -0.14 -10.00 16 12 H 0.10 2.51 5.68 -52.49 -0.30 2.22 16 13 C -0.01 -0.25 5.50 -17.45 -0.10 -0.35 16 14 N -0.89 -24.33 13.70 55.49 0.76 -23.57 16 15 Si 1.09 22.93 29.92 -169.99 -5.09 17.84 16 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.23 -4.47 9.52 -39.34 -0.37 -4.84 16 20 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.71 7.38 -51.93 -0.38 0.32 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.11 1.76 7.09 -52.49 -0.37 1.39 16 28 H 0.12 2.81 5.96 -52.49 -0.31 2.50 16 29 H 0.38 9.06 6.73 -40.82 -0.27 8.78 16 30 H 0.26 7.05 6.77 -40.82 -0.28 6.77 16 31 H 0.11 1.93 7.94 -52.49 -0.42 1.51 16 LS Contribution 280.23 15.07 4.22 4.22 Total: -1.00 -26.57 280.23 -8.28 -34.85 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -3.61 Total: 9.12 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -2.22 Total: -24.85 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.71 Total: -37.40 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.09 Total: 17.84 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -2.29 Total: -3.78 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.57 -8.28 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.315 kcal (2) G-P(sol) polarization free energy of solvation -26.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds