Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 C 1.50705 * 109.46795 * 119.99851 * 2 1 3 5 5 C 1.38343 * 119.94724 * 299.99988 * 4 2 1 6 6 C 1.38405 * 120.16646 * 179.97438 * 5 4 2 7 7 Br 1.89098 * 119.96389 * 180.02562 * 6 5 4 8 8 C 1.38159 * 120.06956 * 0.02562 * 6 5 4 9 9 C 1.39048 * 119.90050 * 0.02562 * 8 6 5 10 10 N 1.39299 * 120.08286 * 179.97438 * 9 8 6 11 11 C 1.36855 * 120.00161 * 359.97438 * 10 9 8 12 12 H 1.08002 * 119.99691 * 0.02562 * 11 10 9 13 13 C 1.38789 * 119.99739 * 180.02562 * 11 10 9 14 14 N 1.31594 * 120.00524 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99534 * 179.72577 * 13 11 10 16 16 H 1.48501 * 109.47087 * 270.27540 * 15 13 11 17 17 H 1.48497 * 109.47017 * 30.27690 * 15 13 11 18 18 H 1.48496 * 109.46733 * 150.28012 * 15 13 11 19 19 C 1.38032 * 119.95290 * 120.27675 * 4 2 1 20 20 H 1.08997 * 109.46934 * 300.00305 * 1 2 3 21 21 H 1.08997 * 109.47022 * 60.00018 * 1 2 3 22 22 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47190 * 239.99220 * 2 1 3 24 24 H 1.09003 * 109.46840 * 299.99539 * 3 2 1 25 25 H 1.08997 * 109.47376 * 59.99965 * 3 2 1 26 26 H 1.08996 * 109.46695 * 180.02562 * 3 2 1 27 27 H 1.07997 * 119.91601 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.05051 * 180.02562 * 8 6 5 29 29 H 0.97001 * 120.00135 * 180.02562 * 10 9 8 30 30 H 0.97005 * 119.99699 * 359.71961 * 14 13 11 31 31 H 1.08002 * 120.03438 * 0.02562 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6974 -0.2368 2.4865 6 6 2.1558 -0.8860 3.6196 7 35 1.6939 -0.2340 5.3335 8 6 2.9504 -2.0098 3.4999 9 6 3.2896 -2.4877 2.2389 10 7 4.0910 -3.6202 2.1138 11 6 4.5460 -4.2636 3.2327 12 1 4.2833 -3.8936 4.2127 13 6 5.3449 -5.3917 3.1079 14 7 5.6654 -5.8422 1.9137 15 14 5.9721 -6.2655 4.6352 16 1 7.2774 -5.6829 5.0379 17 1 4.9932 -6.0970 5.7390 18 1 6.1445 -7.7111 4.3427 19 6 2.8305 -1.8293 1.1028 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6768 1.9563 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.0768 0.6417 2.5829 28 1 3.3075 -2.5164 4.3843 29 1 4.3273 -3.9523 1.2336 30 1 5.3398 -5.3883 1.1206 31 1 3.0954 -2.1953 0.1218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = -5.440210 kcal Electronic energy + Delta-G solvation = -14431.759242 eV Core-core repulsion = 11950.752755 eV Total energy + Delta-G solvation = -2481.006487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57600 -37.85261 -35.81952 -33.85486 -32.13238 -30.03342 -29.34087 -27.91174 -26.54389 -23.86574 -22.96458 -20.94159 -19.58244 -18.12121 -17.44656 -16.33718 -15.94832 -15.40098 -15.32475 -14.72913 -14.49928 -14.28796 -13.86061 -13.57198 -13.12274 -12.88243 -12.77618 -12.37781 -12.33902 -12.06337 -11.95681 -11.93133 -11.50727 -11.39494 -11.27978 -11.13608 -10.50762 -9.47586 -8.93204 -8.68153 -5.85845 0.41445 0.74552 0.75099 1.52479 1.62898 1.77369 2.41531 2.77642 3.16602 3.23119 3.78885 4.09319 4.32971 4.39318 4.47488 4.52195 4.65651 4.80087 4.88380 4.98869 5.04979 5.07765 5.24897 5.35253 5.38505 5.46174 5.53307 5.55734 5.83348 6.01699 6.08877 6.55985 7.35083 7.38750 8.52769 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.006597 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.127534 B = 4243.150582 C = 5849.508114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C -0.138 4.138 4 C -0.010 4.010 5 C -0.193 4.193 6 C -0.028 4.028 7 Br -0.060 7.060 8 C -0.217 4.217 9 C 0.202 3.798 10 N -0.599 5.599 11 C -0.393 4.393 12 H 0.094 0.906 13 C -0.057 4.057 14 N -0.927 5.927 15 Si 1.133 2.867 16 H -0.272 1.272 17 H -0.267 1.267 18 H -0.281 1.281 19 C -0.230 4.230 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.136 0.864 28 H 0.108 0.892 29 H 0.381 0.619 30 H 0.255 0.745 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 13.054 0.842 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.195 4.195 4 C -0.012 4.012 5 C -0.217 4.217 6 C -0.108 4.108 7 Br 0.026 6.974 8 C -0.244 4.244 9 C 0.085 3.915 10 N -0.207 5.207 11 C -0.522 4.522 12 H 0.112 0.888 13 C -0.253 4.253 14 N -0.565 5.565 15 Si 0.953 3.047 16 H -0.198 1.198 17 H -0.191 1.191 18 H -0.206 1.206 19 C -0.255 4.255 20 H 0.078 0.922 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.215 0.785 30 H 0.066 0.934 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.339 11.807 2.188 14.619 hybrid contribution -0.410 0.582 -1.318 1.499 sum -8.749 12.389 0.870 15.192 Atomic orbital electron populations 1.21809 0.93169 1.01738 1.02802 1.20175 0.96828 0.96419 0.93839 1.21808 1.00664 0.94246 1.02802 1.19651 0.93601 0.92919 0.95007 1.20452 1.07796 1.03459 0.89985 1.21445 1.00938 0.97380 0.91063 1.96535 1.92348 1.86961 1.21589 1.20345 1.07434 1.00307 0.96277 1.18006 0.91659 0.87664 0.94180 1.40924 1.47297 1.24738 1.07704 1.20745 1.31724 1.11521 0.88224 0.88847 1.27816 0.95671 0.95998 1.05864 1.71000 1.45311 1.41980 0.98244 0.82615 0.76722 0.75281 0.70054 1.19806 1.19134 1.20600 1.20524 1.07957 1.00970 0.96057 0.92174 0.90449 0.93582 0.90485 0.90455 0.92167 0.93580 0.84625 0.87375 0.78514 0.93405 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.01 71.98 0.65 -2.19 16 2 C -0.05 -1.31 3.09 -11.54 -0.04 -1.34 16 3 C -0.14 -2.84 9.01 71.98 0.65 -2.19 16 4 C -0.01 -0.32 4.78 -19.89 -0.10 -0.41 16 5 C -0.19 -6.35 8.45 22.33 0.19 -6.16 16 6 C -0.03 -1.05 6.22 22.29 0.14 -0.91 16 7 Br -0.06 -1.86 33.70 -20.37 -0.69 -2.54 16 8 C -0.22 -9.50 9.04 22.45 0.20 -9.30 16 9 C 0.20 9.15 6.62 38.36 0.25 9.40 16 10 N -0.60 -30.18 5.43 -184.29 -1.00 -31.18 16 11 C -0.39 -21.08 9.56 84.04 0.80 -20.27 16 12 H 0.09 4.95 5.68 -2.91 -0.02 4.93 16 13 C -0.06 -3.03 5.50 84.86 0.47 -2.56 16 14 N -0.93 -52.82 13.70 21.65 0.30 -52.53 16 15 Si 1.13 47.29 29.92 68.60 2.05 49.34 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.23 -8.88 9.52 22.43 0.21 -8.67 16 20 H 0.06 1.21 7.38 -2.39 -0.02 1.19 16 21 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.82 7.87 -2.39 -0.02 1.80 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.21 7.38 -2.39 -0.02 1.19 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 27 H 0.14 3.78 7.09 -2.91 -0.02 3.76 16 28 H 0.11 5.03 5.96 -2.91 -0.02 5.01 16 29 H 0.38 18.99 6.73 -92.71 -0.62 18.37 16 30 H 0.26 14.37 6.77 -92.70 -0.63 13.74 16 31 H 0.12 4.19 7.94 -2.91 -0.02 4.16 16 Total: -1.00 -58.30 280.23 4.75 -53.55 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.66 Total: 27.97 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 3.43 Total: -44.61 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -0.70 Total: -83.71 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.05 Total: 49.34 kcal Atomic # 35 Polarization: -1.86 SS G_CDS: -0.69 Total: -2.54 kcal Total: -58.30 4.75 -53.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.107 kcal (2) G-P(sol) polarization free energy of solvation -58.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds