Wall clock time and date at job start Tue Mar 31 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47187 * 2 1 4 4 C 1.46904 * 111.00144 * 291.50222 * 3 2 1 5 5 C 1.50703 * 109.46876 * 288.62796 * 4 3 2 6 6 H 1.07997 * 119.99865 * 2.38954 * 5 4 3 7 7 C 1.37876 * 119.99931 * 182.38031 * 5 4 3 8 8 N 1.31516 * 120.00022 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99895 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46809 * 90.00901 * 9 7 5 11 11 H 1.48500 * 109.47378 * 210.00406 * 9 7 5 12 12 H 1.48490 * 109.47763 * 330.00786 * 9 7 5 13 13 C 1.38519 * 111.00183 * 55.45521 * 3 2 1 14 14 N 1.32359 * 119.78963 * 256.47790 * 13 3 2 15 15 C 1.32002 * 121.78382 * 179.74922 * 14 13 3 16 16 Cl 1.73599 * 119.41540 * 180.24833 * 15 14 13 17 17 C 1.38717 * 121.15896 * 0.53441 * 15 14 13 18 18 F 1.35096 * 120.27590 * 179.76260 * 17 15 14 19 19 C 1.38441 * 119.44839 * 359.73715 * 17 15 14 20 20 C 1.40053 * 118.35830 * 0.02562 * 19 17 15 21 21 C 1.43192 * 120.58453 * 180.02562 * 20 19 17 22 22 N 3.66300 * 130.75000 * 85.09406 * 2 1 3 23 23 H 1.08988 * 109.47159 * 60.04762 * 1 2 3 24 24 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47054 * 300.04438 * 1 2 3 26 26 H 1.09001 * 109.47593 * 239.99578 * 2 1 3 27 27 H 1.09006 * 109.46941 * 119.99796 * 2 1 3 28 28 H 1.09001 * 109.46787 * 48.62269 * 4 3 2 29 29 H 1.08991 * 109.47464 * 168.62531 * 4 3 2 30 30 H 0.97003 * 119.99965 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.81993 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7212 2.0489 -1.2760 5 6 2.6028 1.4787 -2.3571 6 1 3.2863 0.6744 -2.1283 7 6 2.5366 1.9837 -3.6384 8 7 1.7046 2.9634 -3.9169 9 14 3.6299 1.2775 -4.9783 10 1 2.9267 0.1556 -5.6507 11 1 3.9392 2.3353 -5.9736 12 1 4.8927 0.7801 -4.3760 13 6 1.4938 2.0974 1.0652 14 7 0.5119 2.9605 0.8582 15 6 -0.0215 3.6565 1.8449 16 17 -1.3115 4.7673 1.5047 17 6 0.4346 3.5202 3.1478 18 9 -0.1211 4.2450 4.1433 19 6 1.4637 2.6349 3.4196 20 6 2.0103 1.9040 2.3574 21 6 3.0759 0.9748 2.5845 22 7 3.9211 0.2373 2.7648 23 1 -0.3633 0.5130 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5145 0.8896 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.6754 1.8841 -1.5354 29 1 1.9079 3.1185 -1.1814 30 1 1.6583 3.3190 -4.8182 31 1 1.8357 2.5110 4.4259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592657.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:22 Heat of formation + Delta-G solvation = 31.645725 kcal Electronic energy + Delta-G solvation = -19685.633814 eV Core-core repulsion = 16329.495626 eV Total energy + Delta-G solvation = -3356.138188 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.058 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07706 -40.81232 -37.38090 -36.66377 -36.30396 -32.80010 -32.75467 -30.85717 -29.35003 -26.79999 -25.09889 -23.57765 -23.07090 -20.60262 -19.45218 -17.88140 -17.11312 -16.48183 -16.22819 -16.06779 -15.31781 -15.01306 -14.36385 -14.14805 -13.75371 -13.49909 -13.34150 -13.26101 -13.04306 -12.67615 -12.39607 -12.08324 -11.70722 -11.45216 -11.40518 -11.27098 -10.87377 -10.75100 -10.53912 -10.18570 -10.03702 -9.78465 -9.51951 -9.04690 -8.51861 -7.78854 -6.11956 -4.15793 0.25418 0.79353 1.58935 2.69279 2.79903 3.26625 3.33734 3.37312 3.58743 3.64014 3.87497 3.91429 4.33050 4.40039 4.72366 5.05741 5.11692 5.24320 5.40607 5.46089 5.55749 5.74432 5.95815 6.10926 6.33947 6.54085 6.82907 7.13947 7.43512 7.52023 7.62924 7.75363 7.94153 8.25806 8.89485 9.48275 10.97892 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.005970 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.730923 B = 4689.327203 C = 5728.731914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.065 3.935 3 N -0.475 5.475 4 C 0.197 3.803 5 C -0.521 4.521 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.390 3.610 14 N -0.471 5.471 15 C 0.200 3.800 16 Cl -0.009 7.009 17 C 0.023 3.977 18 F -0.119 7.119 19 C -0.033 4.033 20 C -0.070 4.070 21 C 0.275 3.725 22 N -0.404 5.404 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 0.159 13.750 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.060 4.060 3 N -0.192 5.192 4 C 0.074 3.926 5 C -0.560 4.560 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.155 3.845 14 N -0.185 5.185 15 C 0.029 3.971 16 Cl 0.020 6.980 17 C -0.001 4.001 18 F -0.098 7.098 19 C -0.062 4.062 20 C -0.079 4.079 21 C -0.041 4.041 22 N -0.079 5.079 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.055 -0.706 12.986 13.622 hybrid contribution -0.415 0.372 -0.165 0.581 sum -4.470 -0.334 12.821 13.582 Atomic orbital electron populations 1.22422 0.96990 1.02038 1.02735 1.22171 0.93490 0.86855 1.03468 1.59797 1.50873 1.03332 1.05191 1.19922 0.97008 0.94739 0.80951 1.21080 1.22397 1.19572 0.92948 0.91803 1.24930 0.95644 0.94945 0.98568 1.69967 1.36405 1.25556 1.20775 0.86492 0.80869 0.78667 0.81390 1.20594 1.21143 1.19771 1.20164 0.84636 0.89482 0.90178 1.67643 1.09270 1.08805 1.32817 1.21951 0.93011 0.93803 0.88304 1.98440 1.45702 1.57957 1.95907 1.17653 0.98950 0.98761 0.84730 1.91552 1.84001 1.75424 1.58785 1.21387 0.92657 0.91957 1.00204 1.16357 0.97576 1.00620 0.93353 1.24701 0.92766 0.93065 0.93605 1.81212 1.09601 1.09497 1.07633 0.90523 0.92084 0.93708 0.87759 0.92057 0.95833 0.93987 0.92692 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.30 37.16 0.35 -2.54 16 2 C 0.07 1.13 5.73 -3.83 -0.02 1.11 16 3 N -0.48 -9.48 4.17 -174.28 -0.73 -10.20 16 4 C 0.20 4.77 3.82 -4.97 -0.02 4.75 16 5 C -0.52 -13.82 8.50 -34.44 -0.29 -14.11 16 6 H 0.06 1.68 7.44 -52.49 -0.39 1.28 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.39 6.76 4.39 -155.01 -0.68 6.08 16 14 N -0.47 -8.28 8.57 -9.22 -0.08 -8.36 16 15 C 0.20 2.96 7.28 -17.30 -0.13 2.83 16 16 Cl -0.01 -0.12 28.75 -51.86 -1.49 -1.61 16 17 C 0.02 0.29 7.29 -39.33 -0.29 0.00 16 18 F -0.12 -1.37 16.83 2.25 0.04 -1.33 16 19 C -0.03 -0.37 9.88 -38.83 -0.38 -0.75 16 20 C -0.07 -0.99 5.71 -106.44 -0.61 -1.60 16 21 C 0.27 4.15 13.43 -22.47 -0.30 3.85 16 22 N -0.40 -6.68 18.54 41.84 0.78 -5.91 16 23 H 0.08 1.39 6.44 -51.94 -0.33 1.06 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.67 6.93 -51.93 -0.36 0.31 16 26 H 0.10 1.93 7.03 -51.93 -0.37 1.57 16 27 H 0.06 0.96 6.82 -51.93 -0.35 0.61 16 28 H 0.02 0.61 6.17 -51.93 -0.32 0.29 16 29 H 0.04 1.13 7.73 -51.93 -0.40 0.73 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -28.53 294.86 -6.30 -34.83 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: -2.51 Total: -4.34 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.47 Total: 1.20 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.71 Total: -49.10 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.49 Total: -1.61 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.53 -6.30 -34.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592657.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.477 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds