Wall clock time and date at job start Tue Mar 31 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.31971 * 124.30032 * 2 1 4 4 C 1.44993 * 114.82126 * 179.77879 * 3 2 1 5 5 C 1.39873 * 111.98795 * 0.43706 * 4 3 2 6 6 N 1.33816 * 119.11577 * 179.79523 * 5 4 3 7 7 C 1.31490 * 121.05194 * 359.74183 * 6 5 4 8 8 Cl 1.73600 * 118.91495 * 179.97438 * 7 6 5 9 9 N 1.32103 * 122.17308 * 359.97438 * 7 6 5 10 10 C 1.32584 * 121.17959 * 0.02562 * 9 7 6 11 11 N 1.38187 * 120.53047 * 179.97438 * 10 9 7 12 12 C 1.46499 * 119.99964 * 95.08266 * 11 10 9 13 13 C 1.36904 * 119.99953 * 275.07942 * 11 10 9 14 14 H 1.08002 * 120.00304 * 7.82215 * 13 11 10 15 15 C 1.38823 * 120.00002 * 187.82951 * 13 11 10 16 16 N 1.31548 * 119.99723 * 354.22754 * 15 13 11 17 17 Si 1.86799 * 120.00050 * 174.50678 * 15 13 11 18 18 H 1.48493 * 109.47331 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47372 * 119.99858 * 17 15 13 20 20 H 1.48506 * 109.46991 * 239.99409 * 17 15 13 21 21 S 1.75353 * 124.30388 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47635 * 299.99715 * 1 2 3 24 24 H 1.09002 * 109.47299 * 60.00490 * 1 2 3 25 25 H 1.07999 * 122.59377 * 0.02574 * 3 2 1 26 26 H 1.08998 * 109.46837 * 236.47555 * 12 11 10 27 27 H 1.09004 * 109.47372 * 356.47253 * 12 11 10 28 28 H 1.08994 * 109.47356 * 116.47702 * 12 11 10 29 29 H 0.97002 * 119.99741 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2507 1.0902 0.0000 4 6 3.6808 0.8514 0.0051 5 6 3.9838 -0.5141 -0.0009 6 7 5.2661 -0.8965 -0.0014 7 6 6.2380 -0.0108 -0.0015 8 17 7.8819 -0.5686 -0.0015 9 7 6.0048 1.2894 -0.0016 10 6 4.7671 1.7648 -0.0011 11 7 4.5385 3.1276 -0.0006 12 6 4.3061 3.8318 -1.2641 13 6 4.5292 3.8198 1.1805 14 1 4.8239 3.3290 2.0964 15 6 4.1408 5.1524 1.2011 16 7 3.8912 5.7822 0.0734 17 14 3.9802 6.0534 2.8295 18 1 4.3198 5.1301 3.9418 19 1 4.9078 7.2129 2.8473 20 1 2.5845 6.5337 2.9939 21 16 2.4952 -1.4485 -0.0006 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8268 2.0836 0.0004 26 1 5.0336 4.6364 -1.3707 27 1 4.4125 3.1334 -2.0943 28 1 3.2994 4.2495 -1.2675 29 1 3.6202 6.7135 0.0878 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:25 Heat of formation + Delta-G solvation = 93.616900 kcal Electronic energy + Delta-G solvation = -17482.530406 eV Core-core repulsion = 14559.459571 eV Total energy + Delta-G solvation = -2923.070835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.49263 -36.84448 -36.19412 -35.89555 -32.95429 -31.67209 -30.43088 -26.95466 -26.35566 -24.86883 -23.37975 -21.82824 -20.42314 -18.12296 -17.61476 -16.67878 -16.01541 -15.31087 -14.99223 -14.85089 -13.96175 -13.64701 -13.46701 -13.30725 -12.74411 -12.41386 -12.13641 -12.06239 -11.58787 -11.16528 -10.98601 -10.97237 -10.72842 -10.70831 -10.70390 -10.40768 -10.25859 -10.08083 -9.03385 -8.82539 -8.42863 -7.83607 -7.58059 -6.08703 -3.55229 0.70088 1.22797 1.34319 1.92175 2.05537 2.46246 3.20434 3.27166 3.30394 3.98391 4.06095 4.43025 4.78840 4.93534 5.11312 5.21826 5.30837 5.55069 5.57884 5.70198 5.94865 6.23672 6.28011 6.50498 6.54976 7.14611 7.32137 7.41799 7.53378 7.94670 8.38076 8.77854 9.40821 9.71133 10.88988 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.007570 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.965243 B = 3697.954001 C = 5237.625771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.191 4.191 3 C -0.067 4.067 4 C -0.183 4.183 5 C 0.105 3.895 6 N -0.511 5.511 7 C 0.388 3.612 8 Cl 0.004 6.996 9 N -0.533 5.533 10 C 0.512 3.488 11 N -0.534 5.534 12 C 0.169 3.831 13 C -0.260 4.260 14 H 0.082 0.918 15 C 0.015 3.985 16 N -0.899 5.899 17 Si 0.925 3.075 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.283 1.283 21 S 0.134 5.866 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.155 0.845 26 H 0.062 0.938 27 H -0.001 1.001 28 H 0.063 0.937 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 -10.019 -1.432 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.306 4.306 3 C -0.096 4.096 4 C -0.202 4.202 5 C -0.146 4.146 6 N -0.233 5.233 7 C 0.089 3.911 8 Cl 0.031 6.969 9 N -0.256 5.256 10 C 0.267 3.733 11 N -0.250 5.250 12 C 0.027 3.973 13 C -0.387 4.387 14 H 0.100 0.900 15 C -0.184 4.184 16 N -0.542 5.542 17 Si 0.753 3.247 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 S 0.391 5.609 22 H 0.085 0.915 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.173 0.827 26 H 0.080 0.920 27 H 0.018 0.982 28 H 0.081 0.919 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.100 -11.608 -1.481 12.400 hybrid contribution 0.016 2.226 0.801 2.366 sum -4.084 -9.382 -0.681 10.255 Atomic orbital electron populations 1.20310 0.87256 1.02625 1.03310 1.23922 1.00086 0.95458 1.11176 1.20607 0.89934 0.99931 0.99148 1.21374 0.96444 0.93587 1.08769 1.23628 0.95797 0.94359 1.00847 1.67233 0.97486 1.38621 1.19996 1.22610 0.88020 0.85378 0.95081 1.98388 1.13434 1.88756 1.96288 1.68196 1.25972 1.13859 1.17569 1.18245 0.84752 0.87525 0.82822 1.41652 1.77807 0.99011 1.06554 1.21329 1.02920 0.92653 0.80446 1.19387 1.40490 0.94218 0.84579 0.89976 1.24983 0.98904 0.96263 0.98251 1.70204 1.48903 1.11002 1.24130 0.85866 0.77780 0.79431 0.81629 1.19942 1.21009 1.20907 1.83851 0.91343 1.06857 1.78897 0.91545 0.90339 0.90404 0.82728 0.91988 0.98206 0.91898 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.32 36.00 0.37 -0.41 15 2 C -0.19 -2.75 6.38 -36.22 -0.23 -2.98 15 3 C -0.07 -1.17 10.13 -38.82 -0.39 -1.56 15 4 C -0.18 -3.76 6.08 -105.20 -0.64 -4.40 15 5 C 0.10 2.01 7.70 -16.08 -0.12 1.89 15 6 N -0.51 -10.27 10.43 -10.37 -0.11 -10.37 15 7 C 0.39 8.01 8.17 -92.15 -0.75 7.26 15 8 Cl 0.00 0.07 29.26 -51.86 -1.52 -1.45 15 9 N -0.53 -12.25 10.39 -10.50 -0.11 -12.36 15 10 C 0.51 11.88 6.05 -154.58 -0.94 10.94 15 11 N -0.53 -13.22 2.97 -121.75 -0.36 -13.58 15 12 C 0.17 3.99 8.95 59.85 0.54 4.53 15 13 C -0.26 -6.81 9.78 -15.07 -0.15 -6.96 15 14 H 0.08 2.19 7.83 -52.49 -0.41 1.78 15 15 C 0.02 0.40 5.46 -17.46 -0.10 0.30 15 16 N -0.90 -23.50 9.46 55.49 0.52 -22.98 15 17 Si 0.92 20.44 29.56 -169.99 -5.02 15.42 15 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 21 S 0.13 1.98 23.19 -107.50 -2.49 -0.51 15 22 H 0.07 0.57 8.13 -51.93 -0.42 0.15 15 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.16 2.76 8.06 -52.49 -0.42 2.34 15 26 H 0.06 1.58 7.14 -51.93 -0.37 1.21 15 27 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 15 28 H 0.06 1.52 6.96 -51.93 -0.36 1.16 15 29 H 0.26 6.53 8.31 -40.82 -0.34 6.19 15 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -27.68 286.21 -9.56 -37.24 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: -2.38 Total: -4.32 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.41 Total: 8.60 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.05 Total: -59.30 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.49 Total: -0.51 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.52 Total: -1.45 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.68 -9.56 -37.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.858 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds