Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86810 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46792 * 239.99714 * 3 2 1 5 5 H 1.48500 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47275 * 119.99504 * 3 2 1 7 7 C 1.40148 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.41629 * 119.99770 * 0.02562 * 7 2 1 10 10 O 1.21765 * 120.00416 * 359.97438 * 9 7 2 11 11 N 1.34785 * 120.00090 * 180.02562 * 9 7 2 12 12 C 1.37903 * 120.00079 * 180.02562 * 11 9 7 13 13 N 1.31081 * 125.07056 * 180.02562 * 12 11 9 14 14 C 1.35597 * 109.65921 * 179.97438 * 13 12 11 15 15 C 1.39945 * 133.36589 * 180.02562 * 14 13 12 16 16 C 1.37643 * 119.77924 * 179.97438 * 15 14 13 17 17 Cl 1.73598 * 119.75693 * 180.02562 * 16 15 14 18 18 C 1.39138 * 120.47498 * 359.97438 * 16 15 14 19 19 F 1.35108 * 119.79517 * 179.97438 * 18 16 15 20 20 C 1.38169 * 120.41028 * 0.25940 * 18 16 15 21 21 C 1.38640 * 119.85064 * 359.48085 * 20 18 16 22 22 N 1.36616 * 125.06643 * 359.97438 * 12 11 9 23 23 H 0.97000 * 126.39650 * 0.02697 * 22 12 11 24 24 H 0.96998 * 120.00170 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99400 * 359.97438 * 11 9 7 26 26 H 1.07993 * 120.10645 * 359.95497 * 15 14 13 27 27 H 1.08001 * 120.07501 * 179.70386 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2751 2.7465 -0.0006 6 1 3.0939 1.6966 1.2126 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2989 -2.4402 0.0005 10 8 0.0813 -2.4404 0.0005 11 7 1.9729 -3.6075 0.0016 12 6 1.2834 -4.8018 0.0011 13 7 1.8359 -5.9904 0.0024 14 6 0.8703 -6.9424 0.0019 15 6 0.9002 -8.3415 0.0033 16 6 -0.2795 -9.0505 0.0028 17 17 -0.2418 -10.7861 0.0052 18 6 -1.5021 -8.3862 0.0015 19 9 -2.6518 -9.0958 0.0005 20 6 -1.5476 -7.0052 -0.0048 21 6 -0.3686 -6.2759 0.0012 22 7 -0.0774 -4.9225 0.0000 23 1 -0.7197 -4.1956 -0.0009 24 1 -0.4850 0.8400 -0.0004 25 1 2.9428 -3.6074 0.0020 26 1 1.8458 -8.8631 0.0045 27 1 -2.4996 -6.4951 -0.0106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167623177.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = -19.450323 kcal Electronic energy + Delta-G solvation = -18749.070190 eV Core-core repulsion = 15254.883216 eV Total energy + Delta-G solvation = -3494.186974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74204 -41.79457 -38.44881 -37.10529 -35.86509 -33.64328 -33.07439 -32.48730 -29.70903 -28.47502 -26.96673 -23.14971 -22.39694 -21.39169 -20.35977 -18.47250 -17.82545 -17.16886 -16.56825 -15.83524 -15.72123 -15.53988 -15.01779 -15.01121 -14.41484 -13.90655 -13.57316 -13.23426 -13.03860 -12.89432 -12.51173 -11.77459 -11.70355 -11.37024 -11.06072 -10.96179 -10.87221 -10.63671 -10.48105 -9.72565 -9.45470 -9.18367 -8.45166 -8.14795 -7.33129 -6.78906 -5.34327 0.97235 1.33371 2.08858 2.84448 2.92382 2.96436 3.04994 3.05501 3.68973 3.76634 3.97495 4.08404 4.34897 4.64111 5.10780 5.24837 5.30540 5.43623 5.58203 5.87030 6.04117 6.31445 6.52916 6.70152 6.87619 7.04681 7.27199 7.60007 8.04345 8.15670 8.41368 8.81848 9.83427 10.09728 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.052286 B = 0.003503 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.390556 B = 7990.217408 C = 8515.764168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.085 3.915 3 Si 0.923 3.077 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.538 3.462 10 O -0.575 6.575 11 N -0.647 5.647 12 C 0.562 3.438 13 N -0.556 5.556 14 C 0.088 3.912 15 C -0.049 4.049 16 C -0.073 4.073 17 Cl -0.061 7.061 18 C 0.093 3.907 19 F -0.131 7.131 20 C -0.120 4.120 21 C 0.058 3.942 22 N -0.584 5.584 23 H 0.441 0.559 24 H 0.280 0.720 25 H 0.418 0.582 26 H 0.145 0.855 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -9.726 -0.004 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.140 4.140 3 Si 0.746 3.254 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.099 0.901 9 C 0.351 3.649 10 O -0.460 6.460 11 N -0.299 5.299 12 C 0.206 3.794 13 N -0.288 5.288 14 C -0.033 4.033 15 C -0.071 4.071 16 C -0.103 4.103 17 Cl -0.032 7.032 18 C 0.071 3.929 19 F -0.110 7.110 20 C -0.142 4.142 21 C -0.055 4.055 22 N -0.210 5.210 23 H 0.293 0.707 24 H 0.091 0.909 25 H 0.255 0.745 26 H 0.163 0.837 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.169 -9.748 -0.003 9.750 hybrid contribution -0.420 1.065 -0.002 1.145 sum -0.251 -8.683 -0.005 8.687 Atomic orbital electron populations 1.69937 1.07507 1.28973 1.29928 1.25840 0.94837 1.01171 0.92167 0.86147 0.79806 0.79356 0.80088 1.18681 1.20083 1.18676 1.19942 0.94951 0.89046 1.51413 0.90084 1.17228 0.87363 0.81612 0.78690 1.90409 1.13836 1.84355 1.57368 1.43704 1.10802 1.01086 1.74293 1.20044 0.79446 0.88510 0.91353 1.70667 1.29494 0.95212 1.33433 1.18684 0.88519 0.93003 1.03138 1.19709 0.96848 0.90029 1.00474 1.20294 0.93183 0.84992 1.11826 1.98350 1.98844 1.08723 1.97279 1.16592 0.80493 0.88217 1.07586 1.91497 1.47178 1.78039 1.94291 1.19539 0.97212 0.90864 1.06629 1.18504 0.95807 0.84780 1.06403 1.43918 1.07816 1.06530 1.62749 0.70709 0.90910 0.74471 0.83709 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.90 11.73 55.56 0.65 -18.24 15 2 C 0.09 2.03 5.50 -17.35 -0.10 1.93 15 3 Si 0.92 17.26 29.56 -169.99 -5.02 12.24 15 4 H -0.26 -4.81 7.11 56.52 0.40 -4.40 15 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 15 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 7 C -0.52 -12.43 9.30 -37.57 -0.35 -12.78 15 8 H 0.08 1.73 7.85 -52.48 -0.41 1.31 15 9 C 0.54 13.14 7.52 -14.96 -0.11 13.03 15 10 O -0.58 -15.46 12.26 5.13 0.06 -15.40 15 11 N -0.65 -13.33 5.35 -15.26 -0.08 -13.41 15 12 C 0.56 11.55 8.70 -319.80 -2.78 8.77 15 13 N -0.56 -10.87 11.31 -11.43 -0.13 -11.00 15 14 C 0.09 1.59 7.22 -84.64 -0.61 0.98 15 15 C -0.05 -0.75 9.87 -39.16 -0.39 -1.13 15 16 C -0.07 -1.06 6.32 -39.47 -0.25 -1.31 15 17 Cl -0.06 -0.77 28.58 -51.86 -1.48 -2.25 15 18 C 0.09 1.39 7.27 -39.27 -0.29 1.11 15 19 F -0.13 -1.91 16.81 2.25 0.04 -1.88 15 20 C -0.12 -1.85 10.03 -39.46 -0.40 -2.24 15 21 C 0.06 1.04 7.30 -83.81 -0.61 0.42 15 22 N -0.58 -11.64 5.84 -11.11 -0.06 -11.71 15 23 H 0.44 9.24 6.32 -40.82 -0.26 8.99 15 24 H 0.28 6.48 8.29 -40.82 -0.34 6.14 15 25 H 0.42 7.38 8.77 -40.82 -0.36 7.02 15 26 H 0.15 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 269.14 15.07 4.06 4.06 Total: -1.00 -27.05 269.14 -8.86 -35.91 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -1.01 Total: 12.91 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -5.88 Total: 8.77 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.38 Total: -54.36 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.06 Total: -15.40 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.02 Total: 12.24 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.05 -8.86 -35.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167623177.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.456 kcal (2) G-P(sol) polarization free energy of solvation -27.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds