Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.43195 * 120.00194 * 303.13654 * 3 2 1 5 5 N 3.51037 * 140.68784 * 303.14094 * 2 1 3 6 6 C 1.41173 * 120.00202 * 123.14286 * 3 2 1 7 7 C 1.39012 * 119.99615 * 5.15904 * 6 3 2 8 8 H 1.08003 * 120.00400 * 338.44888 * 7 6 3 9 9 C 1.40828 * 120.00010 * 158.45410 * 7 6 3 10 10 N 1.30339 * 119.99917 * 356.93851 * 9 7 6 11 11 Si 1.86801 * 119.99898 * 176.94303 * 9 7 6 12 12 H 1.48496 * 109.47038 * 90.00146 * 11 9 7 13 13 H 1.48504 * 109.46615 * 209.99821 * 11 9 7 14 14 H 1.48492 * 109.47206 * 329.99515 * 11 9 7 15 15 N 1.38270 * 120.00441 * 185.15723 * 6 3 2 16 16 C 1.39913 * 119.99888 * 120.38194 * 15 6 3 17 17 C 1.38988 * 120.38511 * 350.90500 * 16 15 6 18 18 N 1.31883 * 121.03478 * 180.02562 * 17 16 15 19 19 C 1.31900 * 121.92949 * 359.97438 * 18 17 16 20 20 F 1.35105 * 119.67803 * 180.02562 * 19 18 17 21 21 C 1.39935 * 120.64491 * 0.02562 * 19 18 17 22 22 C 1.43206 * 120.54358 * 179.97438 * 21 19 18 23 23 N 9.46946 * 155.58081 * 85.14100 * 2 1 3 24 24 C 1.38991 * 120.38616 * 170.92851 * 16 15 6 25 25 H 0.97002 * 119.99869 * 185.02895 * 10 9 7 26 26 H 0.97000 * 119.99602 * 300.38811 * 15 6 3 27 27 H 1.08001 * 119.48047 * 359.74258 * 17 16 15 28 28 H 1.08008 * 120.87191 * 359.95440 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.6769 1.0384 5 7 3.8520 -1.2158 1.8622 6 6 3.2736 0.6694 -1.0237 7 6 2.5824 1.4166 -1.9704 8 1 1.5355 1.2229 -2.1520 9 6 3.2472 2.4260 -2.6930 10 7 4.4945 2.7002 -2.4324 11 14 2.3415 3.3721 -4.0249 12 1 1.6954 4.5692 -3.4294 13 1 3.3051 3.7987 -5.0713 14 1 1.3042 2.5006 -4.6329 15 7 4.6521 0.5812 -1.0846 16 6 5.2694 0.0484 -2.2215 17 6 4.5106 -0.5656 -3.2109 18 7 5.0792 -1.0726 -4.2875 19 6 6.3836 -1.0222 -4.4769 20 9 6.9179 -1.5558 -5.5972 21 6 7.2193 -0.4214 -3.5289 22 6 8.6352 -0.3683 -3.7365 23 7 9.7584 -0.3316 -3.9007 24 6 6.6487 0.1264 -2.3743 25 1 4.9311 3.4430 -2.8780 26 1 5.1911 0.8887 -0.3391 27 1 3.4390 -0.6325 -3.0942 28 1 7.2639 0.5979 -1.6221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083918.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = 84.980414 kcal Electronic energy + Delta-G solvation = -20301.913228 eV Core-core repulsion = 16846.980311 eV Total energy + Delta-G solvation = -3454.932917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.78844 -40.24814 -37.70815 -36.55290 -35.47944 -34.89355 -33.95585 -32.59455 -31.25259 -28.48802 -27.39227 -24.77881 -23.22866 -21.81328 -19.74634 -18.74240 -17.92298 -17.57634 -16.96287 -16.47411 -15.99031 -15.92001 -15.14849 -14.09208 -14.02883 -13.74080 -13.53957 -13.25558 -13.03201 -12.90224 -12.82760 -12.72756 -12.50953 -12.45609 -11.96244 -11.84301 -11.71847 -11.70727 -11.23927 -11.07651 -10.96161 -10.47558 -10.29472 -9.70006 -9.55598 -8.46800 -7.95105 -7.08884 -5.67352 0.60686 1.30507 1.99541 2.56314 2.60897 2.68554 2.72954 3.03454 3.27243 3.43369 3.68713 3.82248 3.86761 3.90264 3.92551 4.02678 4.21045 4.65153 4.90880 4.97800 5.31006 5.36231 5.50883 5.86434 6.01120 6.05082 6.17911 6.52239 6.81682 7.00073 7.36778 7.40542 7.52876 7.73497 7.95960 8.14745 8.78121 8.95787 8.99000 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.006746 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.458565 B = 4149.790943 C = 5204.581366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.322 3.678 3 C -0.303 4.303 4 C 0.307 3.693 5 N -0.528 5.528 6 C 0.371 3.629 7 C -0.377 4.377 8 H 0.115 0.885 9 C 0.070 3.930 10 N -0.725 5.725 11 Si 0.925 3.075 12 H -0.257 1.257 13 H -0.266 1.266 14 H -0.245 1.245 15 N -0.643 5.643 16 C 0.211 3.789 17 C 0.107 3.893 18 N -0.470 5.470 19 C 0.274 3.726 20 F -0.116 7.116 21 C -0.061 4.061 22 C 0.267 3.733 23 N -0.413 5.413 24 C -0.082 4.082 25 H 0.304 0.696 26 H 0.407 0.593 27 H 0.182 0.818 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 3.031 -5.628 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.014 3.986 3 C -0.321 4.321 4 C -0.001 4.001 5 N -0.210 5.210 6 C 0.267 3.733 7 C -0.405 4.405 8 H 0.133 0.867 9 C -0.161 4.161 10 N -0.344 5.344 11 Si 0.746 3.254 12 H -0.181 1.181 13 H -0.190 1.190 14 H -0.168 1.168 15 N -0.262 5.262 16 C 0.103 3.897 17 C -0.057 4.057 18 N -0.182 5.182 19 C 0.116 3.884 20 F -0.095 7.095 21 C -0.068 4.068 22 C -0.049 4.049 23 N -0.089 5.089 24 C -0.114 4.114 25 H 0.116 0.884 26 H 0.245 0.755 27 H 0.199 0.801 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.089 1.940 -5.375 7.027 hybrid contribution 0.400 1.300 -0.080 1.362 sum 4.489 3.240 -5.455 7.772 Atomic orbital electron populations 1.81096 1.12202 1.15659 1.11744 1.24655 0.91276 0.90961 0.91754 1.12892 0.83076 1.30908 1.05249 1.25191 0.92567 0.90761 0.91585 1.81124 1.09822 1.16568 1.13468 1.16786 0.79892 0.86600 0.90015 1.20411 0.99011 1.08049 1.13002 0.86687 1.26503 0.94767 0.97624 0.97251 1.69480 1.10544 1.22064 1.32265 0.85895 0.80496 0.80232 0.78762 1.18089 1.19028 1.16824 1.41349 1.04942 1.63894 1.16051 1.18272 0.91033 0.91760 0.88684 1.22666 1.01212 0.94496 0.87344 1.67010 1.09550 1.18499 1.23181 1.17713 0.87939 0.98517 0.84240 1.91596 1.84729 1.83990 1.49173 1.16281 0.85469 1.07367 0.97721 1.25193 0.92166 0.93724 0.93832 1.81189 1.11706 1.08521 1.07464 1.20824 0.93537 1.00411 0.96596 0.88357 0.75540 0.80133 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.26 18.54 41.84 0.78 -10.49 15 2 C 0.32 6.47 13.91 -22.48 -0.31 6.16 15 3 C -0.30 -5.61 5.88 -104.94 -0.62 -6.22 15 4 C 0.31 6.01 14.80 -22.46 -0.33 5.68 15 5 N -0.53 -11.05 18.54 41.85 0.78 -10.27 15 6 C 0.37 6.20 4.97 -83.56 -0.42 5.79 15 7 C -0.38 -6.29 7.02 -38.32 -0.27 -6.56 15 8 H 0.12 1.98 7.01 -52.48 -0.37 1.61 15 9 C 0.07 1.09 4.99 -17.21 -0.09 1.00 15 10 N -0.72 -11.15 10.63 55.59 0.59 -10.56 15 11 Si 0.93 12.99 29.57 -169.99 -5.03 7.97 15 12 H -0.26 -3.71 7.11 56.52 0.40 -3.30 15 13 H -0.27 -3.79 7.11 56.52 0.40 -3.39 15 14 H -0.25 -3.56 7.11 56.52 0.40 -3.16 15 15 N -0.64 -9.54 3.36 -8.10 -0.03 -9.57 15 16 C 0.21 3.00 4.87 -83.61 -0.41 2.60 15 17 C 0.11 1.61 9.82 -17.25 -0.17 1.44 15 18 N -0.47 -7.37 10.35 -13.06 -0.14 -7.50 15 19 C 0.27 4.11 8.40 -16.89 -0.14 3.97 15 20 F -0.12 -1.77 16.83 2.25 0.04 -1.73 15 21 C -0.06 -0.83 5.75 -106.69 -0.61 -1.44 15 22 C 0.27 3.82 15.01 -22.48 -0.34 3.48 15 23 N -0.41 -6.49 18.54 41.82 0.78 -5.71 15 24 C -0.08 -1.05 9.78 -38.66 -0.38 -1.42 15 25 H 0.30 4.36 8.29 -40.82 -0.34 4.02 15 26 H 0.41 5.67 8.82 -40.82 -0.36 5.31 15 27 H 0.18 2.70 6.33 -52.49 -0.33 2.37 15 28 H 0.15 1.59 8.06 -52.48 -0.42 1.17 15 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -21.84 291.38 -2.54 -24.38 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -0.62 Total: 4.64 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: -4.08 Total: 14.46 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 2.76 Total: -54.10 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 12.99 SS G_CDS: -5.03 Total: 7.97 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -21.84 -2.54 -24.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083918.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.362 kcal (2) G-P(sol) polarization free energy of solvation -21.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds