Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00110 * 2 1 4 4 C 1.46900 * 110.99804 * 123.95249 * 2 1 3 5 5 C 1.53000 * 109.47290 * 170.00204 * 4 2 1 6 6 C 1.53001 * 109.46948 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47019 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47329 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47200 * 180.02562 * 8 7 6 10 10 C 1.46903 * 111.00418 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47667 * 205.00504 * 10 9 8 12 12 C 1.52997 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47296 * 59.99748 * 12 11 10 14 14 C 1.50700 * 109.47257 * 59.99902 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 C 1.53003 * 109.47195 * 299.99941 * 13 12 11 23 23 C 1.52994 * 109.46903 * 84.99606 * 10 9 8 24 24 H 1.08997 * 109.46888 * 296.05224 * 1 2 3 25 25 H 1.08998 * 109.46670 * 56.04725 * 1 2 3 26 26 H 1.08990 * 109.47491 * 176.04433 * 1 2 3 27 27 H 1.08995 * 109.46891 * 183.94869 * 3 2 1 28 28 H 1.08997 * 109.47354 * 303.95259 * 3 2 1 29 29 H 1.09002 * 109.46860 * 63.95424 * 3 2 1 30 30 H 1.09000 * 109.47207 * 49.99577 * 4 2 1 31 31 H 1.09010 * 109.47175 * 289.99862 * 4 2 1 32 32 H 1.08995 * 109.47274 * 59.99960 * 5 4 2 33 33 H 1.08996 * 109.46563 * 299.99919 * 5 4 2 34 34 H 1.09003 * 109.47106 * 60.00232 * 6 5 4 35 35 H 1.08996 * 109.47461 * 299.99416 * 6 5 4 36 36 H 1.09009 * 109.46911 * 59.99952 * 7 6 5 37 37 H 1.09002 * 109.47057 * 300.00552 * 7 6 5 38 38 H 1.08995 * 109.46990 * 60.00195 * 8 7 6 39 39 H 1.09002 * 109.47484 * 300.00269 * 8 7 6 40 40 H 1.00896 * 111.00418 * 303.95553 * 9 8 7 41 41 H 1.09005 * 109.46638 * 325.00521 * 10 9 8 42 42 H 1.08998 * 109.46987 * 59.99359 * 11 10 9 43 43 H 1.09005 * 109.46648 * 300.00005 * 11 10 9 44 44 H 1.08996 * 109.46678 * 299.99615 * 12 11 10 45 45 H 1.09004 * 109.46869 * 179.97438 * 12 11 10 46 46 H 1.08997 * 109.47279 * 180.02562 * 13 12 11 47 47 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 48 48 H 1.08998 * 109.47453 * 180.02562 * 22 13 12 49 49 H 1.08996 * 109.47248 * 300.00419 * 22 13 12 50 50 H 1.08999 * 109.47824 * 300.01002 * 23 10 9 51 51 H 1.09005 * 109.46726 * 60.00969 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9705 6 6 4.0527 -1.7526 2.1557 7 6 5.5616 -1.9425 1.9883 8 6 6.1099 -2.7402 3.1731 9 7 7.5587 -2.9221 3.0126 10 6 8.1211 -3.6852 4.1348 11 6 9.6041 -3.3433 4.2918 12 6 10.1899 -4.1386 5.4602 13 6 10.0380 -5.6359 5.1851 14 6 10.7721 -5.9908 3.9177 15 1 11.2944 -5.2249 3.3636 16 6 10.7760 -7.2932 3.4649 17 7 10.1437 -8.2267 4.1420 18 14 11.6865 -7.7332 1.8944 19 1 13.1261 -7.4022 2.0474 20 1 11.5390 -9.1865 1.6273 21 1 11.1189 -6.9609 0.7601 22 6 8.5549 -5.9778 5.0282 23 6 7.9690 -5.1826 3.8604 24 1 -0.3633 0.4513 0.9232 25 1 -0.3632 0.5740 -0.8525 26 1 -0.3634 -1.0251 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9164 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.5089 -1.7406 1.1757 31 1 1.7975 -0.2247 2.0629 32 1 3.9909 0.0193 0.9325 33 1 3.7023 -1.4966 0.0453 34 1 3.5663 -2.7273 2.1941 35 1 3.8548 -1.2109 3.0806 36 1 6.0484 -0.9679 1.9495 37 1 5.7592 -2.4843 1.0633 38 1 5.6231 -3.7147 3.2113 39 1 5.9123 -2.1989 4.0983 40 1 7.7722 -3.3643 2.1312 41 1 7.5900 -3.4280 5.0514 42 1 9.7123 -2.2765 4.4873 43 1 10.1351 -3.6004 3.3752 44 1 9.6589 -3.8819 6.3768 45 1 11.2466 -3.8954 5.5717 46 1 10.4549 -6.2025 6.0177 47 1 10.1462 -9.1428 3.8233 48 1 8.4466 -7.0446 4.8326 49 1 8.0239 -5.7210 5.9448 50 1 6.9125 -5.4261 3.7485 51 1 8.5001 -5.4397 2.9438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = -35.242668 kcal Electronic energy + Delta-G solvation = -22454.999438 eV Core-core repulsion = 19387.470181 eV Total energy + Delta-G solvation = -3067.529257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.36957 -38.05396 -35.92957 -33.96036 -32.07513 -30.24521 -29.45571 -27.96190 -27.74595 -25.50688 -24.40468 -22.61134 -21.45644 -21.13581 -20.91332 -20.40686 -18.64887 -16.26420 -15.89388 -15.75529 -15.31090 -15.13540 -14.90655 -14.51943 -14.38063 -13.96160 -13.42176 -13.12994 -12.85547 -12.66292 -12.56195 -12.48949 -12.37746 -12.05816 -11.76952 -11.68447 -11.47115 -11.30405 -11.14187 -10.95974 -10.88405 -10.83664 -10.61736 -10.54553 -10.50265 -10.26433 -10.02144 -9.61208 -9.10506 -8.93331 -8.71835 -8.64948 -8.26023 -7.76105 -5.92517 -3.96506 3.33695 3.38831 3.41550 3.59598 4.43879 4.47940 4.68660 4.78662 4.82754 5.01393 5.03753 5.07826 5.17868 5.26754 5.36301 5.37630 5.42988 5.49383 5.54195 5.55787 5.64127 5.70295 5.79428 5.86696 5.89799 5.96316 6.06458 6.14445 6.30287 6.32156 6.38599 6.51884 6.55666 6.59362 6.66599 6.68891 6.81745 6.84085 6.93385 7.17224 7.24647 7.38911 7.55176 7.67295 7.79007 7.87562 7.99912 8.20388 8.54297 9.06057 9.66237 11.13331 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.002539 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.704532 B =11026.813461 C =11439.249076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.053 3.947 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.059 3.941 9 N -0.691 5.691 10 C 0.094 3.906 11 C -0.092 4.092 12 C -0.108 4.108 13 C 0.043 3.957 14 C -0.498 4.498 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.104 4.104 23 C -0.126 4.126 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.064 0.936 40 H 0.338 0.662 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.023 0.977 47 H 0.258 0.742 48 H 0.089 0.911 49 H 0.012 0.988 50 H 0.027 0.973 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 15.063 -5.208 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.274 5.274 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.071 4.071 9 N -0.320 5.320 10 C -0.016 4.016 11 C -0.130 4.130 12 C -0.146 4.146 13 C 0.025 3.975 14 C -0.537 4.537 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.143 4.143 23 C -0.165 4.165 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.107 0.893 49 H 0.030 0.970 50 H 0.045 0.955 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.958 15.264 -5.371 22.726 hybrid contribution -0.220 -0.883 -0.333 0.969 sum -16.178 14.381 -5.704 22.384 Atomic orbital electron populations 1.22381 0.87430 1.02284 1.00369 1.61996 1.07757 1.14052 1.43550 1.22446 1.01340 0.88692 1.00284 1.22208 0.96265 0.98067 0.90919 1.21597 0.93812 1.00708 0.99182 1.21511 0.95887 1.00177 0.97953 1.21548 0.94365 1.01039 0.98366 1.21930 0.88855 0.98051 0.98223 1.60699 1.10948 1.54457 1.05927 1.21572 0.95877 0.91908 0.92193 1.21340 0.94146 0.97351 1.00123 1.21562 0.98573 0.98784 0.95647 1.18690 0.92551 0.89505 0.96798 1.21128 1.31123 0.93274 1.08149 0.92706 1.24954 0.95615 0.96654 0.96896 1.69868 1.43107 1.01321 1.38905 0.86778 0.80524 0.77176 0.84231 1.20406 1.21507 1.20387 1.21443 0.97271 1.02140 0.93410 1.22003 0.97680 0.94753 1.02026 0.95767 0.91426 0.91330 0.90869 0.91549 0.95727 0.90793 0.94897 0.91925 0.91087 0.92014 0.92158 0.91361 0.92139 0.95523 0.91741 0.84406 0.92276 0.94051 0.91334 0.95001 0.93502 0.95898 0.93190 0.89288 0.96963 0.95460 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.74 16 2 N -0.55 -4.73 5.02 -251.26 -1.26 -5.99 16 3 C 0.02 0.15 9.32 60.07 0.56 0.71 16 4 C 0.05 0.45 4.96 -3.82 -0.02 0.43 16 5 C -0.12 -1.01 5.14 -26.73 -0.14 -1.15 16 6 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 7 C -0.12 -1.28 5.47 -26.73 -0.15 -1.43 16 8 C 0.06 0.80 5.48 -3.83 -0.02 0.78 16 9 N -0.69 -11.07 6.25 -106.73 -0.67 -11.74 16 10 C 0.09 1.72 2.47 -67.71 -0.17 1.56 16 11 C -0.09 -1.79 5.30 -26.73 -0.14 -1.93 16 12 C -0.11 -2.26 5.41 -26.74 -0.14 -2.41 16 13 C 0.04 1.06 2.58 -91.77 -0.24 0.82 16 14 C -0.50 -13.26 6.61 -34.44 -0.23 -13.48 16 15 H 0.05 1.45 6.71 -52.49 -0.35 1.10 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -25.33 11.33 55.43 0.63 -24.70 16 18 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C -0.10 -2.45 5.23 -26.75 -0.14 -2.59 16 23 C -0.13 -2.62 4.95 -26.76 -0.13 -2.75 16 24 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.03 0.28 8.12 -51.92 -0.42 -0.15 16 32 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 39 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 40 H 0.34 5.44 8.47 -39.29 -0.33 5.11 16 41 H 0.06 1.09 7.80 -51.93 -0.40 0.68 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.09 2.36 6.08 -51.93 -0.32 2.04 16 49 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.03 0.53 7.45 -51.93 -0.39 0.14 16 51 H 0.07 1.66 7.20 -51.93 -0.37 1.28 16 LS Contribution 381.89 15.07 5.75 5.75 Total: -1.00 -27.51 381.89 -11.48 -39.00 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -10.30 Total: 1.91 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -0.61 Total: -20.42 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -1.30 Total: -42.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.51 -11.48 -39.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.754 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds