Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47317 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47193 * 30.00172 * 3 2 1 6 6 H 1.48500 * 109.47030 * 150.00000 * 3 2 1 7 7 C 1.39928 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00594 * 196.77012 * 7 2 1 9 9 C 1.41414 * 119.99955 * 16.75900 * 7 2 1 10 10 C 1.40784 * 120.20424 * 25.64363 * 9 7 2 11 11 C 1.37642 * 119.87873 * 180.27341 * 10 9 7 12 12 C 1.38528 * 120.32296 * 359.43219 * 11 10 9 13 13 C 1.39243 * 120.43271 * 0.25648 * 12 11 10 14 14 N 1.39939 * 119.95182 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99904 * 215.64849 * 14 13 12 16 16 O 1.21292 * 120.00463 * 355.54202 * 15 14 13 17 17 C 1.50700 * 120.00065 * 175.53949 * 15 14 13 18 18 H 1.09004 * 115.54983 * 34.33291 * 17 15 14 19 19 C 1.52997 * 117.50250 * 248.62327 * 17 15 14 20 20 C 1.52994 * 60.00100 * 252.50852 * 19 17 15 21 21 F 1.39904 * 117.50130 * 252.50961 * 20 19 17 22 22 Cl 1.80299 * 117.51998 * 107.47946 * 20 19 17 23 23 C 1.38283 * 120.10174 * 0.04187 * 13 12 11 24 24 H 0.97005 * 119.99987 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.06150 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.84005 * 179.71241 * 11 10 9 27 27 H 1.08002 * 119.78401 * 180.27989 * 12 11 10 28 28 H 0.96996 * 119.99783 * 35.64381 * 14 13 12 29 29 H 1.09005 * 117.49712 * 359.97438 * 19 17 15 30 30 H 1.08997 * 117.50248 * 145.01959 * 19 17 15 31 31 H 1.08006 * 120.15870 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2693 9 6 1.3460 -2.4103 -0.3542 10 6 0.2162 -2.3744 -1.1934 11 6 -0.4263 -3.5445 -1.5288 12 6 0.0402 -4.7594 -1.0541 13 6 1.1604 -4.8110 -0.2286 14 7 1.6233 -6.0438 0.2447 15 6 2.1458 -6.1369 1.4836 16 8 2.2894 -5.1389 2.1578 17 6 2.5515 -7.4809 2.0313 18 1 2.9498 -8.1854 1.3010 19 6 1.7266 -8.0513 3.1866 20 6 3.1382 -7.5204 3.4437 21 9 4.1446 -8.4581 3.6992 22 17 3.2919 -5.9552 4.3254 23 6 1.8159 -3.6457 0.1245 24 1 -0.4850 0.8401 0.0004 25 1 -0.1486 -1.4300 -1.5694 26 1 -1.2957 -3.5157 -2.1688 27 1 -0.4680 -5.6727 -1.3265 28 1 1.5681 -6.8314 -0.3188 29 1 0.8906 -7.4542 3.5510 30 1 1.5818 -9.1312 3.2166 31 1 2.6845 -3.6846 0.7652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181661955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = -27.668013 kcal Electronic energy + Delta-G solvation = -19188.053420 eV Core-core repulsion = 15797.050444 eV Total energy + Delta-G solvation = -3391.002976 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.14143 -39.95909 -37.57581 -36.36133 -35.22501 -34.44311 -33.02517 -29.82486 -28.43816 -25.32684 -24.57725 -22.59791 -21.29330 -20.76200 -19.68579 -17.98080 -17.69088 -16.47012 -15.78717 -15.51915 -15.29017 -14.88594 -14.73562 -14.52631 -13.84707 -13.25723 -12.96480 -12.83277 -12.72622 -12.18537 -11.78294 -11.71849 -11.43584 -11.35395 -11.11454 -10.75320 -10.61827 -10.49482 -10.16022 -9.99713 -9.75231 -9.39689 -9.05827 -8.80093 -7.44577 -6.94255 -6.71895 -4.33076 1.53761 2.32533 2.79955 2.98604 3.08069 3.10499 3.15153 3.21569 3.39924 3.87464 3.98060 4.13237 4.38024 4.64802 4.89874 5.18851 5.20145 5.47346 5.71733 6.23147 6.38232 6.71766 7.00018 7.03807 7.08894 7.25237 7.53382 7.71966 7.95565 8.09384 8.14551 8.23887 8.59897 8.70089 8.94151 8.98193 10.23089 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.004692 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.224513 B = 5966.204358 C = 6977.581892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.171 4.171 11 C -0.093 4.093 12 C -0.261 4.261 13 C 0.148 3.852 14 N -0.660 5.660 15 C 0.525 3.475 16 O -0.484 6.484 17 C -0.175 4.175 18 H 0.143 0.857 19 C -0.135 4.135 20 C 0.116 3.884 21 F -0.150 7.150 22 Cl -0.061 7.061 23 C -0.208 4.208 24 H 0.280 0.720 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -13.708 2.884 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.096 0.904 9 C 0.115 3.885 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.282 4.282 13 C 0.057 3.943 14 N -0.304 5.304 15 C 0.309 3.691 16 O -0.356 6.356 17 C -0.198 4.198 18 H 0.161 0.839 19 C -0.173 4.173 20 C 0.072 3.928 21 F -0.130 7.130 22 Cl -0.034 7.034 23 C -0.230 4.230 24 H 0.091 0.909 25 H 0.136 0.864 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.232 0.768 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.213 -12.727 3.518 13.388 hybrid contribution 0.415 0.170 -0.232 0.506 sum 2.628 -12.557 3.285 13.243 Atomic orbital electron populations 1.69830 1.07550 1.29120 1.35445 1.25891 0.94729 1.01265 0.92265 0.86305 0.80562 0.80581 0.79240 1.19289 1.20334 1.18599 1.19570 0.97798 0.90981 1.40282 0.90423 1.17520 0.91078 0.91744 0.88161 1.21346 0.99616 0.96806 1.01309 1.20453 0.98417 0.92692 0.99615 1.20029 1.00308 0.96915 1.10995 1.17421 0.94953 0.83544 0.98431 1.43298 1.61174 1.11107 1.14831 1.19193 0.79137 0.88658 0.82098 1.90909 1.50740 1.36381 1.57618 1.23314 1.03944 0.99763 0.92779 0.83925 1.24085 0.93062 1.03454 0.96672 1.23181 0.88395 0.84042 0.97230 1.92941 1.62006 1.63509 1.94514 1.98836 1.98192 1.29039 1.77366 1.21090 1.03967 0.91229 1.06667 0.90935 0.86428 0.89068 0.89324 0.76771 0.85285 0.85438 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.91 10.97 55.55 0.61 -20.30 16 2 C 0.08 1.95 5.15 -17.35 -0.09 1.87 16 3 Si 0.91 19.18 29.59 -169.99 -5.03 14.15 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 16 8 H 0.08 2.08 7.90 -52.49 -0.41 1.67 16 9 C 0.12 3.22 5.56 -106.85 -0.59 2.62 16 10 C -0.17 -4.45 8.69 -38.84 -0.34 -4.79 16 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 12 C -0.26 -5.59 9.97 -39.10 -0.39 -5.98 16 13 C 0.15 3.24 6.28 -83.77 -0.53 2.71 16 14 N -0.66 -11.06 5.33 -9.91 -0.05 -11.11 16 15 C 0.53 8.79 7.45 -10.99 -0.08 8.71 16 16 O -0.48 -10.23 11.17 5.55 0.06 -10.17 16 17 C -0.18 -2.04 6.18 -91.77 -0.57 -2.61 16 18 H 0.14 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.13 -1.29 10.06 -26.74 -0.27 -1.56 16 20 C 0.12 1.47 4.38 -26.74 -0.12 1.35 16 21 F -0.15 -1.86 17.60 2.25 0.04 -1.82 16 22 Cl -0.06 -0.97 26.24 -51.86 -1.36 -2.33 16 23 C -0.21 -5.30 8.43 -38.69 -0.33 -5.63 16 24 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 25 H 0.12 3.15 6.20 -52.49 -0.33 2.82 16 26 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.40 4.97 8.82 -40.82 -0.36 4.61 16 29 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 2.95 6.26 -52.48 -0.33 2.62 16 LS Contribution 291.45 15.07 4.39 4.39 Total: -1.00 -30.66 291.45 -8.05 -38.71 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -2.68 Total: 7.16 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -4.04 Total: -18.69 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.56 Total: -31.42 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.06 Total: -10.17 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.36 Total: -2.33 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.66 -8.05 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181661955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.046 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds