Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47317 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47193 * 30.00172 * 3 2 1 6 6 H 1.48500 * 109.47030 * 150.00000 * 3 2 1 7 7 C 1.39928 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00594 * 196.77012 * 7 2 1 9 9 C 1.41414 * 119.99955 * 16.75900 * 7 2 1 10 10 C 1.40784 * 120.20424 * 25.64363 * 9 7 2 11 11 C 1.37642 * 119.87873 * 180.27341 * 10 9 7 12 12 C 1.38528 * 120.32296 * 359.43219 * 11 10 9 13 13 C 1.39243 * 120.43271 * 0.25648 * 12 11 10 14 14 N 1.39939 * 119.95182 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99904 * 215.64849 * 14 13 12 16 16 O 1.21292 * 120.00463 * 355.54202 * 15 14 13 17 17 C 1.50700 * 120.00065 * 175.53949 * 15 14 13 18 18 H 1.09004 * 115.54983 * 34.33291 * 17 15 14 19 19 C 1.52997 * 117.50250 * 248.62327 * 17 15 14 20 20 C 1.52994 * 60.00100 * 252.50852 * 19 17 15 21 21 F 1.39904 * 117.50130 * 252.50961 * 20 19 17 22 22 Cl 1.80299 * 117.51998 * 107.47946 * 20 19 17 23 23 C 1.38283 * 120.10174 * 0.04187 * 13 12 11 24 24 H 0.97005 * 119.99987 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.06150 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.84005 * 179.71241 * 11 10 9 27 27 H 1.08002 * 119.78401 * 180.27989 * 12 11 10 28 28 H 0.96996 * 119.99783 * 35.64381 * 14 13 12 29 29 H 1.09005 * 117.49712 * 359.97438 * 19 17 15 30 30 H 1.08997 * 117.50248 * 145.01959 * 19 17 15 31 31 H 1.08006 * 120.15870 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2693 9 6 1.3460 -2.4103 -0.3542 10 6 0.2162 -2.3744 -1.1934 11 6 -0.4263 -3.5445 -1.5288 12 6 0.0402 -4.7594 -1.0541 13 6 1.1604 -4.8110 -0.2286 14 7 1.6233 -6.0438 0.2447 15 6 2.1458 -6.1369 1.4836 16 8 2.2894 -5.1389 2.1578 17 6 2.5515 -7.4809 2.0313 18 1 2.9498 -8.1854 1.3010 19 6 1.7266 -8.0513 3.1866 20 6 3.1382 -7.5204 3.4437 21 9 4.1446 -8.4581 3.6992 22 17 3.2919 -5.9552 4.3254 23 6 1.8159 -3.6457 0.1245 24 1 -0.4850 0.8401 0.0004 25 1 -0.1486 -1.4300 -1.5694 26 1 -1.2957 -3.5157 -2.1688 27 1 -0.4680 -5.6727 -1.3265 28 1 1.5681 -6.8314 -0.3188 29 1 0.8906 -7.4542 3.5510 30 1 1.5818 -9.1312 3.2166 31 1 2.6845 -3.6846 0.7652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181661955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = -46.243202 kcal Electronic energy + Delta-G solvation = -19188.858901 eV Core-core repulsion = 15797.050444 eV Total energy + Delta-G solvation = -3391.808457 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.09255 -41.35955 -39.20275 -37.56836 -36.34988 -36.06882 -34.79655 -31.73383 -30.16550 -27.25720 -25.82368 -23.51326 -22.95881 -22.50031 -21.09350 -19.52422 -19.03765 -17.73662 -17.20040 -17.00599 -16.59870 -16.44876 -16.18657 -16.01223 -15.21707 -14.85575 -14.63038 -14.09967 -13.90644 -13.63638 -13.50401 -13.15634 -12.86362 -12.82919 -12.65614 -12.39082 -12.22149 -11.93963 -11.77213 -11.55096 -11.21349 -11.07260 -10.75415 -10.36229 -9.36437 -8.72306 -8.62445 -6.35950 0.54498 0.84509 1.01195 1.35339 1.44371 1.48751 1.57546 1.90111 2.20657 2.28345 2.72633 2.78581 3.22510 3.40922 3.75611 3.87260 4.31385 4.49708 4.54505 4.66590 4.71930 5.06485 5.13102 5.15894 5.24969 5.34626 5.76941 5.88821 6.09756 6.12921 6.36494 6.63902 6.70550 6.95083 7.02620 7.33157 8.34220 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.004692 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.224513 B = 5966.204358 C = 6977.581892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.086 3.914 10 C -0.197 4.197 11 C -0.093 4.093 12 C -0.246 4.246 13 C 0.157 3.843 14 N -0.648 5.648 15 C 0.519 3.481 16 O -0.533 6.533 17 C -0.167 4.167 18 H 0.187 0.813 19 C -0.100 4.100 20 C 0.096 3.904 21 F -0.147 7.147 22 Cl -0.104 7.104 23 C -0.233 4.233 24 H 0.288 0.712 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.424 0.576 29 H 0.123 0.877 30 H 0.175 0.825 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -16.434 2.139 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.083 3.917 10 C -0.217 4.217 11 C -0.112 4.112 12 C -0.267 4.267 13 C 0.064 3.936 14 N -0.295 5.295 15 C 0.305 3.695 16 O -0.408 6.408 17 C -0.188 4.188 18 H 0.204 0.796 19 C -0.137 4.137 20 C 0.052 3.948 21 F -0.127 7.127 22 Cl -0.078 7.078 23 C -0.255 4.255 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.140 0.860 27 H 0.153 0.847 28 H 0.262 0.738 29 H 0.142 0.858 30 H 0.193 0.807 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.366 -15.519 2.754 15.821 hybrid contribution 0.645 0.792 -0.011 1.022 sum 2.012 -14.727 2.743 15.115 Atomic orbital electron populations 1.69870 1.08786 1.30430 1.36091 1.26687 0.95559 1.04265 0.91257 0.85235 0.78842 0.76051 0.79727 1.18070 1.18947 1.18998 1.19743 0.97583 0.92768 1.43106 0.91880 1.17857 0.92164 0.92548 0.89097 1.21299 1.00322 0.97540 1.02549 1.20837 0.98804 0.92249 0.99317 1.20489 0.99255 0.98048 1.08888 1.17465 0.94307 0.84556 0.97251 1.43171 1.60748 1.10135 1.15430 1.20077 0.77700 0.90200 0.81493 1.90917 1.52256 1.38830 1.58783 1.23336 1.04723 0.97397 0.93377 0.79632 1.24335 0.90546 1.05866 0.92967 1.23444 0.90513 0.83045 0.97800 1.92946 1.62311 1.62948 1.94523 1.98833 1.98358 1.32196 1.78387 1.21044 1.04349 0.92530 1.07575 0.90139 0.88110 0.86006 0.84742 0.73790 0.85835 0.80730 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.07 10.97 21.82 0.24 -44.83 16 2 C 0.04 1.96 5.15 85.25 0.44 2.40 16 3 Si 0.98 40.67 29.59 68.60 2.03 42.70 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.50 -29.27 9.05 23.46 0.21 -29.06 16 8 H 0.06 3.67 7.90 -2.91 -0.02 3.65 16 9 C 0.09 4.92 5.56 -21.31 -0.12 4.81 16 10 C -0.20 -10.53 8.69 22.75 0.20 -10.34 16 11 C -0.09 -4.16 10.02 22.20 0.22 -3.94 16 12 C -0.25 -9.81 9.97 22.58 0.23 -9.58 16 13 C 0.16 6.71 6.28 38.10 0.24 6.95 16 14 N -0.65 -20.04 5.33 -303.65 -1.62 -21.66 16 15 C 0.52 16.53 7.45 87.66 0.65 17.18 16 16 O -0.53 -22.92 11.17 -3.07 -0.03 -22.96 16 17 C -0.17 -3.27 6.18 -11.54 -0.07 -3.34 16 18 H 0.19 2.05 8.14 -2.39 -0.02 2.03 16 19 C -0.10 -1.48 10.06 30.59 0.31 -1.18 16 20 C 0.10 2.22 4.38 30.59 0.13 2.35 16 21 F -0.15 -3.27 17.60 44.97 0.79 -2.48 16 22 Cl -0.10 -3.35 26.24 -2.72 -0.07 -3.42 16 23 C -0.23 -12.32 8.43 22.85 0.19 -12.13 16 24 H 0.29 14.13 8.30 -92.70 -0.77 13.36 16 25 H 0.10 5.62 6.20 -2.91 -0.02 5.61 16 26 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.42 8.69 8.82 -92.71 -0.82 7.87 16 29 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.18 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 5.06 6.26 -2.91 -0.02 5.04 16 Total: -1.00 -72.79 291.45 4.34 -68.45 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.37 Total: 20.08 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.63 Total: -35.88 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -1.38 Total: -66.49 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.03 Total: -22.96 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.79 Total: -2.48 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.07 Total: -3.42 kcal Total: -72.79 4.34 -68.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181661955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.205 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds