Wall clock time and date at job start Tue Mar 31 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86790 * 119.99916 * 2 1 4 4 H 1.48500 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47687 * 300.00139 * 3 2 1 6 6 H 1.48506 * 109.47451 * 60.00572 * 3 2 1 7 7 C 1.39932 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99663 * 169.00280 * 7 2 1 9 9 C 1.41403 * 120.00195 * 349.00476 * 7 2 1 10 10 C 1.40778 * 120.21210 * 331.76687 * 9 7 2 11 11 C 1.37639 * 119.88999 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.32273 * 359.97247 * 11 10 9 13 13 C 1.39246 * 120.42519 * 0.02562 * 12 11 10 14 14 N 1.39939 * 119.94609 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00169 * 146.37378 * 14 13 12 16 16 O 1.21292 * 120.00240 * 354.86696 * 15 14 13 17 17 C 1.50703 * 120.00025 * 174.58955 * 15 14 13 18 18 H 1.08994 * 115.54782 * 34.69406 * 17 15 14 19 19 C 1.52994 * 117.49880 * 249.02005 * 17 15 14 20 20 C 1.53005 * 117.49539 * 180.35894 * 17 15 14 21 21 F 1.39893 * 117.50368 * 0.02562 * 20 17 15 22 22 Cl 1.80300 * 117.49759 * 215.00351 * 20 17 15 23 23 C 1.38285 * 120.10639 * 0.26982 * 13 12 11 24 24 H 0.97003 * 119.99937 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.05718 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.83858 * 180.02562 * 11 10 9 27 27 H 1.07992 * 119.78736 * 180.02562 * 12 11 10 28 28 H 0.97000 * 119.99842 * 326.37018 * 14 13 12 29 29 H 1.08996 * 117.50452 * 0.02562 * 19 17 15 30 30 H 1.09004 * 117.49455 * 145.02539 * 19 17 15 31 31 H 1.07997 * 120.16246 * 179.75256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3964 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0731 -1.2204 -0.1790 9 6 1.3204 -2.4253 0.2325 10 6 0.1513 -2.4378 1.0166 11 6 -0.5124 -3.6228 1.2396 12 6 -0.0360 -4.8044 0.6956 13 6 1.1190 -4.8074 -0.0821 14 7 1.5916 -6.0068 -0.6264 15 6 2.2040 -6.0070 -1.8269 16 8 2.2633 -4.9852 -2.4777 17 6 2.8208 -7.2753 -2.3581 18 1 2.2954 -8.1958 -2.1037 19 6 4.3469 -7.3348 -2.4485 20 6 3.5086 -7.2086 -3.7231 21 9 3.5175 -5.9748 -4.3824 22 17 3.3882 -8.6586 -4.7878 23 6 1.8032 -3.6279 -0.3124 24 1 -0.4850 0.8401 0.0004 25 1 -0.2238 -1.5192 1.4433 26 1 -1.4095 -3.6314 1.8410 27 1 -0.5639 -5.7292 0.8757 28 1 1.4785 -6.8381 -0.1395 29 1 4.9049 -6.4568 -2.1234 30 1 4.8255 -8.2946 -2.2540 31 1 2.7013 -3.6298 -0.9121 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181661956.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:58 Heat of formation + Delta-G solvation = -55.937104 kcal Electronic energy + Delta-G solvation = -19167.574487 eV Core-core repulsion = 15775.345671 eV Total energy + Delta-G solvation = -3392.228816 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.98023 -41.39914 -39.21327 -37.83081 -36.45936 -36.14600 -34.83556 -31.76453 -30.22210 -27.29402 -25.91640 -23.55921 -23.00861 -22.53196 -21.07611 -19.56198 -19.08530 -17.77751 -17.20365 -17.13623 -16.54940 -16.49113 -16.11240 -16.06291 -15.06849 -14.95362 -14.63476 -14.29940 -14.02127 -13.61048 -13.57210 -13.13801 -12.87841 -12.84504 -12.61738 -12.54630 -12.22123 -11.99913 -11.90558 -11.59656 -11.29014 -11.10432 -10.94118 -10.64602 -9.38093 -8.75484 -8.59511 -6.40177 0.25274 0.76838 0.96545 1.35329 1.40369 1.50783 1.52375 1.96407 2.20994 2.29452 2.67181 2.74182 3.23438 3.45020 3.71079 3.80391 4.32525 4.45610 4.53015 4.60996 4.68288 5.01685 5.08635 5.10653 5.19414 5.32177 5.72665 5.82421 6.06425 6.09805 6.33130 6.55549 6.67608 6.92834 6.98931 7.23855 8.36002 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.004189 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.153469 B = 6682.194435 C = 7551.539784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.086 3.914 10 C -0.191 4.191 11 C -0.094 4.094 12 C -0.243 4.243 13 C 0.154 3.846 14 N -0.645 5.645 15 C 0.520 3.480 16 O -0.554 6.554 17 C -0.167 4.167 18 H 0.193 0.807 19 C -0.102 4.102 20 C 0.103 3.897 21 F -0.157 7.157 22 Cl -0.092 7.092 23 C -0.233 4.233 24 H 0.287 0.713 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.426 0.574 29 H 0.117 0.883 30 H 0.181 0.819 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -16.955 -1.289 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.083 0.917 9 C 0.084 3.916 10 C -0.211 4.211 11 C -0.113 4.113 12 C -0.264 4.264 13 C 0.061 3.939 14 N -0.291 5.291 15 C 0.307 3.693 16 O -0.431 6.431 17 C -0.189 4.189 18 H 0.211 0.789 19 C -0.140 4.140 20 C 0.058 3.942 21 F -0.138 7.138 22 Cl -0.065 7.065 23 C -0.255 4.255 24 H 0.098 0.902 25 H 0.124 0.876 26 H 0.142 0.858 27 H 0.154 0.846 28 H 0.265 0.735 29 H 0.135 0.865 30 H 0.198 0.802 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.512 -16.193 -1.889 17.210 hybrid contribution -0.007 0.855 -0.287 0.902 sum 5.505 -15.339 -2.176 16.441 Atomic orbital electron populations 1.69859 1.08727 1.30242 1.37066 1.26725 0.95701 1.04357 0.91326 0.85126 0.79100 0.76126 0.79113 1.18568 1.19275 1.18078 1.19791 0.95837 0.92060 1.45492 0.91678 1.17853 0.92530 0.92462 0.88798 1.21383 0.99419 0.97512 1.02827 1.20878 0.98877 0.92249 0.99277 1.20517 0.98078 0.98755 1.09089 1.17488 0.94188 0.85371 0.96872 1.43168 1.57208 1.09592 1.19154 1.20231 0.78434 0.89574 0.81012 1.90869 1.58082 1.35769 1.58354 1.23481 0.99401 0.99550 0.96468 0.78949 1.24387 0.90317 1.08984 0.90301 1.23564 1.10748 0.76474 0.83400 1.92993 1.97021 1.41555 1.82193 1.98770 1.98413 1.38687 1.70650 1.20939 1.03409 0.93337 1.07820 0.90228 0.87645 0.85785 0.84617 0.73467 0.86457 0.80169 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.73 10.82 21.82 0.24 -45.50 16 2 C 0.03 1.73 5.25 85.25 0.45 2.18 16 3 Si 0.98 40.77 29.57 68.60 2.03 42.80 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.50 -29.26 9.06 23.46 0.21 -29.05 16 8 H 0.06 3.76 7.87 -2.91 -0.02 3.74 16 9 C 0.09 4.96 5.55 -21.31 -0.12 4.84 16 10 C -0.19 -10.29 8.66 22.75 0.20 -10.09 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 12 C -0.24 -9.87 9.97 22.58 0.23 -9.65 16 13 C 0.15 6.70 6.26 38.10 0.24 6.94 16 14 N -0.65 -20.50 5.34 -303.65 -1.62 -22.12 16 15 C 0.52 17.46 7.35 87.66 0.64 18.11 16 16 O -0.55 -25.87 12.86 -3.07 -0.04 -25.91 16 17 C -0.17 -3.38 6.03 -11.54 -0.07 -3.45 16 18 H 0.19 2.06 8.14 -2.39 -0.02 2.04 16 19 C -0.10 -1.61 10.07 30.62 0.31 -1.30 16 20 C 0.10 2.39 4.33 30.62 0.13 2.52 16 21 F -0.16 -5.42 15.71 44.97 0.71 -4.72 16 22 Cl -0.09 -1.75 29.40 -2.72 -0.08 -1.83 16 23 C -0.23 -12.46 8.39 22.85 0.19 -12.27 16 24 H 0.29 14.17 8.30 -92.71 -0.77 13.41 16 25 H 0.11 5.91 6.18 -2.91 -0.02 5.89 16 26 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 27 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.43 8.85 8.82 -92.71 -0.82 8.03 16 29 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.18 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 4.78 6.44 -2.91 -0.02 4.76 16 Total: -1.00 -75.84 294.10 4.23 -71.61 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.37 Total: 20.89 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 2.63 Total: -35.22 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -1.38 Total: -67.62 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.71 Total: -4.72 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -75.84 4.23 -71.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181661956.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.673 kcal (2) G-P(sol) polarization free energy of solvation -75.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds