Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00314 * 2 1 4 4 H 1.48507 * 109.47158 * 269.99961 * 3 2 1 5 5 H 1.48501 * 109.47052 * 30.00213 * 3 2 1 6 6 H 1.48506 * 109.47441 * 149.99874 * 3 2 1 7 7 C 1.39942 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99797 * 168.97733 * 7 2 1 9 9 C 1.41407 * 119.99766 * 349.24757 * 7 2 1 10 10 C 1.40774 * 120.20998 * 151.48318 * 9 7 2 11 11 C 1.37643 * 119.88797 * 179.69892 * 10 9 7 12 12 C 1.38527 * 120.31898 * 0.57858 * 11 10 9 13 13 C 1.39249 * 120.43141 * 359.72222 * 12 11 10 14 14 N 1.39932 * 119.95002 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99706 * 326.26171 * 14 13 12 16 16 O 1.21284 * 120.00081 * 354.86286 * 15 14 13 17 17 C 1.50701 * 119.99563 * 174.86370 * 15 14 13 18 18 H 1.08995 * 115.55650 * 325.66762 * 17 15 14 19 19 C 1.52999 * 117.50018 * 111.38393 * 17 15 14 20 20 C 1.52999 * 60.00464 * 107.48395 * 19 17 15 21 21 F 1.39901 * 117.49821 * 107.48684 * 20 19 17 22 22 Cl 1.80292 * 117.49940 * 252.51397 * 20 19 17 23 23 C 1.38289 * 120.10240 * 359.96985 * 13 12 11 24 24 H 0.96999 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05507 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.83837 * 180.29686 * 11 10 9 27 27 H 1.07999 * 119.78522 * 179.69685 * 12 11 10 28 28 H 0.97005 * 120.00072 * 146.26713 * 14 13 12 29 29 H 1.09000 * 117.50151 * 214.97984 * 19 17 15 30 30 H 1.09004 * 117.49576 * 359.97438 * 19 17 15 31 31 H 1.07994 * 120.16020 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7001 7 6 2.0079 -1.2119 -0.0005 8 1 3.0730 -1.2204 -0.1794 9 6 1.3195 -2.4259 0.2274 10 6 1.7984 -3.6270 -0.3290 11 6 1.1265 -4.8059 -0.0978 12 6 -0.0263 -4.8147 0.6705 13 6 -0.5153 -3.6333 1.2221 14 7 -1.6803 -3.6539 1.9969 15 6 -2.6694 -4.5212 1.7036 16 8 -2.5910 -5.2185 0.7143 17 6 -3.8727 -4.6245 2.6049 18 1 -3.6784 -4.4779 3.6673 19 6 -5.2114 -4.1271 2.0559 20 6 -4.9612 -5.6278 2.2178 21 9 -5.6311 -6.2861 3.2546 22 17 -4.7059 -6.5957 0.7183 23 6 0.1493 -2.4399 1.0063 24 1 -0.4850 0.8400 0.0004 25 1 2.6939 -3.6243 -0.9326 26 1 1.4973 -5.7277 -0.5210 27 1 -0.5493 -5.7438 0.8423 28 1 -1.7761 -3.0440 2.7451 29 1 -5.8979 -3.6527 2.7571 30 1 -5.2216 -3.7247 1.0429 31 1 -0.2289 -1.5233 1.4339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181661957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -29.490708 kcal Electronic energy + Delta-G solvation = -19179.993815 eV Core-core repulsion = 15788.911801 eV Total energy + Delta-G solvation = -3391.082014 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.15008 -39.94141 -37.60464 -36.38773 -35.23657 -34.27455 -33.27804 -29.56709 -28.65588 -25.30173 -24.61210 -22.59151 -21.32314 -20.80655 -19.65047 -18.02614 -17.45817 -16.64025 -15.85283 -15.57597 -15.29624 -14.82958 -14.74754 -14.44318 -13.91597 -13.25335 -12.95096 -12.79877 -12.64663 -12.40841 -11.84340 -11.75204 -11.50658 -11.23501 -11.06423 -10.80058 -10.72684 -10.47046 -10.12053 -9.94852 -9.93104 -9.45011 -9.15279 -8.90174 -7.36329 -6.99235 -6.70362 -4.41108 1.50720 2.29425 2.80006 2.94456 3.05583 3.10064 3.11996 3.19518 3.39155 3.89828 3.93076 4.14999 4.39321 4.65103 4.93162 5.20612 5.22721 5.49642 5.64858 6.24248 6.60878 6.64604 6.84533 7.01716 7.04553 7.24480 7.56966 7.64743 7.89238 8.00884 8.09995 8.28719 8.51601 8.69763 8.87652 8.92665 10.21762 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.004181 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.539670 B = 6694.901139 C = 7337.937040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.119 3.881 10 C -0.223 4.223 11 C -0.089 4.089 12 C -0.222 4.222 13 C 0.142 3.858 14 N -0.656 5.656 15 C 0.529 3.471 16 O -0.495 6.495 17 C -0.176 4.176 18 H 0.144 0.856 19 C -0.134 4.134 20 C 0.118 3.882 21 F -0.149 7.149 22 Cl -0.066 7.066 23 C -0.176 4.176 24 H 0.278 0.722 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.401 0.599 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.443 -3.776 6.680 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.243 4.243 11 C -0.108 4.108 12 C -0.243 4.243 13 C 0.051 3.949 14 N -0.299 5.299 15 C 0.314 3.686 16 O -0.369 6.369 17 C -0.198 4.198 18 H 0.162 0.838 19 C -0.172 4.172 20 C 0.073 3.927 21 F -0.129 7.129 22 Cl -0.039 7.039 23 C -0.198 4.198 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.235 0.765 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.609 -4.242 5.881 12.038 hybrid contribution 0.157 0.975 0.471 1.094 sum -9.452 -3.267 6.352 11.848 Atomic orbital electron populations 1.69790 1.07383 1.28822 1.37151 1.25863 0.94810 1.01136 0.92377 0.86295 0.80445 0.80654 0.79189 1.19562 1.20243 1.18570 1.19528 0.95942 0.90351 1.43645 0.90450 1.17371 0.90851 0.92199 0.87999 1.21096 1.03078 0.93421 1.06658 1.20432 0.95286 0.96636 0.98416 1.20336 0.99597 0.95927 1.08452 1.17599 0.86143 0.94727 0.96475 1.43328 1.16270 1.37555 1.32749 1.19147 0.82658 0.81406 0.85413 1.90847 1.77917 1.42226 1.25877 1.23342 0.91638 1.02109 1.02713 0.83812 1.24098 0.95972 0.91500 1.05664 1.23172 1.00035 0.87001 0.82508 1.92941 1.80673 1.82408 1.56919 1.98821 1.96400 1.74610 1.34037 1.21133 1.00240 0.94495 1.03900 0.91113 0.88818 0.88993 0.87914 0.76462 0.85383 0.85230 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.80 55.55 0.60 -19.69 16 2 C 0.07 1.82 5.26 -17.34 -0.09 1.73 16 3 Si 0.91 18.30 29.57 -169.99 -5.03 13.27 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -12.06 9.06 -37.74 -0.34 -12.41 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 9 C 0.12 3.10 5.56 -106.85 -0.59 2.51 16 10 C -0.22 -5.46 9.79 -38.84 -0.38 -5.84 16 11 C -0.09 -2.05 10.02 -39.69 -0.40 -2.45 16 12 C -0.22 -5.16 8.66 -39.10 -0.34 -5.50 16 13 C 0.14 3.21 6.26 -83.77 -0.52 2.69 16 14 N -0.66 -11.67 5.34 -9.91 -0.05 -11.72 16 15 C 0.53 8.96 7.35 -10.98 -0.08 8.88 16 16 O -0.50 -10.10 11.39 5.55 0.06 -10.03 16 17 C -0.18 -2.11 6.18 -91.77 -0.57 -2.67 16 18 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 19 C -0.13 -1.34 10.06 -26.73 -0.27 -1.61 16 20 C 0.12 1.48 4.38 -26.73 -0.12 1.36 16 21 F -0.15 -1.85 17.60 2.25 0.04 -1.81 16 22 Cl -0.07 -0.99 26.24 -51.86 -1.36 -2.35 16 23 C -0.18 -4.37 8.57 -38.68 -0.33 -4.70 16 24 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 25 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 26 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.10 2.36 6.42 -52.49 -0.34 2.02 16 28 H 0.40 5.76 8.82 -40.82 -0.36 5.40 16 29 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.13 3.14 6.18 -52.49 -0.32 2.82 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -29.50 291.53 -8.06 -37.56 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.68 Total: 8.40 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -4.03 Total: -18.02 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.55 Total: -31.41 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.06 Total: -10.03 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.36 Total: -2.35 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.50 -8.06 -37.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181661957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.068 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds