Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00314 * 2 1 4 4 H 1.48507 * 109.47158 * 269.99961 * 3 2 1 5 5 H 1.48501 * 109.47052 * 30.00213 * 3 2 1 6 6 H 1.48506 * 109.47441 * 149.99874 * 3 2 1 7 7 C 1.39942 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99797 * 168.97733 * 7 2 1 9 9 C 1.41407 * 119.99766 * 349.24757 * 7 2 1 10 10 C 1.40774 * 120.20998 * 151.48318 * 9 7 2 11 11 C 1.37643 * 119.88797 * 179.69892 * 10 9 7 12 12 C 1.38527 * 120.31898 * 0.57858 * 11 10 9 13 13 C 1.39249 * 120.43141 * 359.72222 * 12 11 10 14 14 N 1.39932 * 119.95002 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99706 * 326.26171 * 14 13 12 16 16 O 1.21284 * 120.00081 * 354.86286 * 15 14 13 17 17 C 1.50701 * 119.99563 * 174.86370 * 15 14 13 18 18 H 1.08995 * 115.55650 * 325.66762 * 17 15 14 19 19 C 1.52999 * 117.50018 * 111.38393 * 17 15 14 20 20 C 1.52999 * 60.00464 * 107.48395 * 19 17 15 21 21 F 1.39901 * 117.49821 * 107.48684 * 20 19 17 22 22 Cl 1.80292 * 117.49940 * 252.51397 * 20 19 17 23 23 C 1.38289 * 120.10240 * 359.96985 * 13 12 11 24 24 H 0.96999 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05507 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.83837 * 180.29686 * 11 10 9 27 27 H 1.07999 * 119.78522 * 179.69685 * 12 11 10 28 28 H 0.97005 * 120.00072 * 146.26713 * 14 13 12 29 29 H 1.09000 * 117.50151 * 214.97984 * 19 17 15 30 30 H 1.09004 * 117.49576 * 359.97438 * 19 17 15 31 31 H 1.07994 * 120.16020 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7001 7 6 2.0079 -1.2119 -0.0005 8 1 3.0730 -1.2204 -0.1794 9 6 1.3195 -2.4259 0.2274 10 6 1.7984 -3.6270 -0.3290 11 6 1.1265 -4.8059 -0.0978 12 6 -0.0263 -4.8147 0.6705 13 6 -0.5153 -3.6333 1.2221 14 7 -1.6803 -3.6539 1.9969 15 6 -2.6694 -4.5212 1.7036 16 8 -2.5910 -5.2185 0.7143 17 6 -3.8727 -4.6245 2.6049 18 1 -3.6784 -4.4779 3.6673 19 6 -5.2114 -4.1271 2.0559 20 6 -4.9612 -5.6278 2.2178 21 9 -5.6311 -6.2861 3.2546 22 17 -4.7059 -6.5957 0.7183 23 6 0.1493 -2.4399 1.0063 24 1 -0.4850 0.8400 0.0004 25 1 2.6939 -3.6243 -0.9326 26 1 1.4973 -5.7277 -0.5210 27 1 -0.5493 -5.7438 0.8423 28 1 -1.7761 -3.0440 2.7451 29 1 -5.8979 -3.6527 2.7571 30 1 -5.2216 -3.7247 1.0429 31 1 -0.2289 -1.5233 1.4339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181661957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -46.049638 kcal Electronic energy + Delta-G solvation = -19180.711864 eV Core-core repulsion = 15788.911801 eV Total energy + Delta-G solvation = -3391.800063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.10305 -41.35729 -39.22896 -37.57621 -36.32492 -35.89558 -35.04990 -31.44723 -30.37761 -27.18316 -25.85765 -23.51086 -23.10629 -22.36738 -21.13746 -19.32155 -19.08441 -17.93844 -17.18978 -16.97041 -16.53974 -16.51033 -16.14555 -15.96213 -15.21333 -14.86942 -14.53436 -14.20716 -13.95313 -13.62809 -13.59762 -12.94604 -12.87170 -12.76454 -12.63471 -12.50488 -12.13877 -11.86201 -11.73535 -11.68375 -11.22067 -11.12459 -10.79400 -10.42166 -9.26852 -8.76862 -8.53408 -6.36224 0.51330 0.78019 1.05571 1.42305 1.44465 1.54695 1.59572 1.90661 2.24517 2.26589 2.74638 2.83480 3.21407 3.38291 3.73427 3.84577 4.29975 4.47123 4.54025 4.70076 4.74698 4.85854 5.13613 5.18556 5.22482 5.38865 5.79882 5.86564 6.04115 6.11436 6.35369 6.57499 6.75559 6.96784 6.99217 7.27154 8.39714 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.004181 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.539670 B = 6694.901139 C = 7337.937040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.090 3.910 10 C -0.244 4.244 11 C -0.089 4.089 12 C -0.233 4.233 13 C 0.151 3.849 14 N -0.652 5.652 15 C 0.526 3.474 16 O -0.532 6.532 17 C -0.172 4.172 18 H 0.182 0.818 19 C -0.105 4.105 20 C 0.105 3.895 21 F -0.146 7.146 22 Cl -0.099 7.099 23 C -0.195 4.195 24 H 0.287 0.713 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.418 0.582 29 H 0.172 0.828 30 H 0.124 0.876 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -2.671 7.966 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.264 4.264 11 C -0.108 4.108 12 C -0.254 4.254 13 C 0.058 3.942 14 N -0.297 5.297 15 C 0.313 3.687 16 O -0.408 6.408 17 C -0.193 4.193 18 H 0.199 0.801 19 C -0.143 4.143 20 C 0.060 3.940 21 F -0.127 7.127 22 Cl -0.072 7.072 23 C -0.217 4.217 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.255 0.745 29 H 0.189 0.811 30 H 0.142 0.858 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.713 -3.147 7.196 13.283 hybrid contribution 0.425 0.550 0.089 0.701 sum -10.289 -2.597 7.284 12.871 Atomic orbital electron populations 1.69840 1.08702 1.30235 1.37039 1.26678 0.95607 1.04190 0.91285 0.85190 0.79078 0.76078 0.79247 1.19242 1.18916 1.18309 1.19792 0.96152 0.91502 1.45457 0.90659 1.17774 0.91817 0.93009 0.88667 1.21253 1.03872 0.93696 1.07569 1.20731 0.94979 0.97219 0.97851 1.20514 0.99796 0.96278 1.08854 1.17616 0.87098 0.93711 0.95758 1.43292 1.15206 1.38436 1.32746 1.19942 0.83376 0.79956 0.85459 1.90838 1.78837 1.43329 1.27752 1.23347 0.89908 1.02582 1.03502 0.80093 1.24332 0.94555 0.89009 1.06368 1.23355 1.01177 0.87742 0.81696 1.92949 1.80564 1.82553 1.56585 1.98818 1.96574 1.75671 1.36132 1.21089 1.00746 0.94986 1.04855 0.90280 0.88224 0.86513 0.87693 0.74451 0.81070 0.85798 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.02 10.80 21.83 0.24 -41.78 16 2 C 0.04 1.77 5.26 85.26 0.45 2.22 16 3 Si 0.98 37.16 29.57 68.60 2.03 39.19 16 4 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.50 -26.48 9.06 23.46 0.21 -26.27 16 8 H 0.08 3.86 7.87 -2.91 -0.02 3.84 16 9 C 0.09 4.83 5.56 -21.31 -0.12 4.71 16 10 C -0.24 -12.23 9.79 22.75 0.22 -12.01 16 11 C -0.09 -4.14 10.02 22.20 0.22 -3.92 16 12 C -0.23 -10.88 8.66 22.58 0.20 -10.68 16 13 C 0.15 6.85 6.26 38.10 0.24 7.09 16 14 N -0.65 -22.47 5.34 -303.65 -1.62 -24.09 16 15 C 0.53 17.03 7.35 87.66 0.64 17.68 16 16 O -0.53 -21.48 11.39 -3.04 -0.03 -21.51 16 17 C -0.17 -3.59 6.18 -11.54 -0.07 -3.66 16 18 H 0.18 2.43 8.14 -2.39 -0.02 2.41 16 19 C -0.10 -1.71 10.06 30.59 0.31 -1.40 16 20 C 0.10 2.38 4.38 30.60 0.13 2.51 16 21 F -0.15 -3.23 17.60 44.97 0.79 -2.43 16 22 Cl -0.10 -2.93 26.24 -2.72 -0.07 -3.00 16 23 C -0.20 -9.84 8.57 22.85 0.20 -9.64 16 24 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 25 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 26 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 27 H 0.11 4.82 6.42 -2.91 -0.02 4.80 16 28 H 0.42 11.29 8.82 -92.70 -0.82 10.47 16 29 H 0.17 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.12 6.04 6.18 -2.91 -0.02 6.02 16 Total: -1.00 -65.35 291.53 4.33 -61.02 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.37 Total: 25.97 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 2.63 Total: -33.36 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -1.38 Total: -65.87 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.03 Total: -21.51 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.79 Total: -2.43 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.07 Total: -3.00 kcal Total: -65.35 4.33 -61.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181661957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.972 kcal (2) G-P(sol) polarization free energy of solvation -65.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds