Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86806 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46895 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47017 * 120.00346 * 3 2 1 6 6 H 1.48500 * 109.46949 * 240.00182 * 3 2 1 7 7 C 1.39926 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00119 * 149.75839 * 7 2 1 9 9 C 1.41408 * 120.00159 * 329.76347 * 7 2 1 10 10 C 1.40782 * 120.20565 * 333.59663 * 9 7 2 11 11 C 1.37647 * 119.88307 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32009 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.43424 * 359.97438 * 12 11 10 14 14 N 1.39938 * 119.94945 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99642 * 213.71185 * 14 13 12 16 16 O 1.21285 * 120.00664 * 4.77969 * 15 14 13 17 17 C 1.50702 * 119.99893 * 184.77320 * 15 14 13 18 18 H 1.09000 * 115.55144 * 325.67961 * 17 15 14 19 19 C 1.53002 * 117.49689 * 111.37964 * 17 15 14 20 20 C 1.53001 * 60.00116 * 107.49036 * 19 17 15 21 21 F 1.39893 * 117.49920 * 252.50901 * 20 19 17 22 22 Cl 1.80303 * 117.49527 * 107.48666 * 20 19 17 23 23 C 1.38285 * 120.10115 * 359.74134 * 13 12 11 24 24 H 0.97003 * 120.00190 * 173.28486 * 1 2 3 25 25 H 1.07995 * 120.05685 * 359.96340 * 10 9 7 26 26 H 1.07995 * 119.83704 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.78002 * 179.97438 * 12 11 10 28 28 H 0.96990 * 120.00187 * 33.70834 * 14 13 12 29 29 H 1.09002 * 117.50451 * 214.98567 * 19 17 15 30 30 H 1.09009 * 117.49880 * 0.02562 * 19 17 15 31 31 H 1.07997 * 120.15989 * 180.25255 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0960 1.6964 1.2124 6 1 3.0960 1.6964 -1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 2.9777 -1.2752 -0.4716 9 6 1.4452 -2.3534 0.6156 10 6 0.5197 -2.2074 1.6664 11 6 -0.0243 -3.3232 2.2611 12 6 0.3347 -4.5902 1.8311 13 6 1.2488 -4.7500 0.7929 14 7 1.6039 -6.0346 0.3662 15 6 2.8541 -6.2763 -0.0753 16 8 3.6954 -5.4044 -0.0221 17 6 3.2068 -7.6303 -0.6352 18 1 2.7024 -8.4773 -0.1700 19 6 3.5029 -7.7199 -2.1336 20 6 4.6425 -7.8423 -1.1199 21 9 5.5273 -6.7643 -1.0095 22 17 5.3702 -9.4741 -0.8786 23 6 1.8018 -3.6411 0.1789 24 1 -0.4850 -0.8343 -0.0982 25 1 0.2372 -1.2217 2.0054 26 1 -0.7345 -3.2104 3.0668 27 1 -0.0972 -5.4597 2.3042 28 1 0.9504 -6.7509 0.3883 29 1 3.1933 -8.6259 -2.6546 30 1 3.4431 -6.7994 -2.7144 31 1 2.5078 -3.7639 -0.6291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181661958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = -43.885676 kcal Electronic energy + Delta-G solvation = -19172.931554 eV Core-core repulsion = 15781.225327 eV Total energy + Delta-G solvation = -3391.706227 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.92912 -40.03539 -37.73545 -36.83816 -35.48257 -34.69310 -33.16075 -29.75921 -28.53894 -25.12604 -24.74157 -22.68182 -21.49774 -20.88034 -19.71950 -18.27890 -17.97782 -16.62760 -15.91509 -15.60557 -15.17618 -14.97815 -14.62619 -14.10556 -13.84412 -13.67461 -13.30253 -12.87702 -12.67418 -12.23934 -12.02535 -11.88255 -11.76668 -11.57894 -11.09801 -11.01125 -10.58267 -10.43979 -10.36567 -10.22486 -9.77556 -9.50704 -9.15740 -8.92314 -7.68975 -7.27560 -7.08760 -4.43512 1.11388 2.17392 2.70592 2.80308 3.14748 3.18804 3.30515 3.35642 3.40065 3.55591 4.03452 4.08401 4.37873 4.52276 4.78663 5.11534 5.19444 5.39053 5.48196 6.07351 6.26023 6.53421 6.79346 6.85491 6.88771 7.33955 7.49987 7.68435 7.77074 7.85774 7.99835 8.13650 8.24491 8.52694 8.76890 8.87911 10.02160 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.004065 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.700468 B = 6887.137325 C = 7685.679872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.045 3.955 3 Si 1.061 2.939 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.226 4.226 11 C -0.070 4.070 12 C -0.276 4.276 13 C 0.162 3.838 14 N -0.659 5.659 15 C 0.528 3.472 16 O -0.495 6.495 17 C -0.176 4.176 18 H 0.148 0.852 19 C -0.133 4.133 20 C 0.133 3.867 21 F -0.123 7.123 22 Cl -0.108 7.108 23 C -0.215 4.215 24 H 0.298 0.702 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.401 0.599 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -14.884 -3.342 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.178 4.178 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.095 0.905 9 C 0.106 3.894 10 C -0.246 4.246 11 C -0.089 4.089 12 C -0.297 4.297 13 C 0.070 3.930 14 N -0.303 5.303 15 C 0.312 3.688 16 O -0.368 6.368 17 C -0.198 4.198 18 H 0.165 0.835 19 C -0.171 4.171 20 C 0.088 3.912 21 F -0.102 7.102 22 Cl -0.082 7.082 23 C -0.237 4.237 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.235 0.765 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.271 -12.712 -3.243 13.520 hybrid contribution -0.044 -2.263 0.131 2.267 sum 3.227 -14.975 -3.112 15.631 Atomic orbital electron populations 1.70456 1.08323 1.34112 1.28206 1.27000 0.95515 1.04278 0.91018 0.83706 0.75805 0.73837 0.78204 1.19880 1.19881 1.20062 1.20536 1.05861 0.94883 1.33832 0.90473 1.17508 0.89909 0.91928 0.90085 1.21122 1.05641 0.97119 1.00680 1.20381 0.98133 0.92409 0.97998 1.19959 1.09507 0.96473 1.03762 1.17460 0.98157 0.82189 0.95164 1.43311 1.11757 1.11532 1.63697 1.19263 0.82864 0.87523 0.79155 1.90860 1.47655 1.45520 1.52774 1.23472 0.96775 1.00053 0.99542 0.83470 1.24163 0.94960 1.06918 0.91081 1.23113 0.82487 0.77905 1.07696 1.93063 1.69090 1.51721 1.96367 1.98773 1.86303 1.25751 1.97353 1.20935 1.08044 0.91026 1.03662 0.88952 0.87871 0.88794 0.89027 0.76496 0.84848 0.85373 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.89 12.41 55.55 0.69 -20.20 16 2 C 0.04 1.15 4.79 -17.35 -0.08 1.07 16 3 Si 1.06 21.97 30.02 -169.99 -5.10 16.86 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.52 -14.36 8.93 -37.74 -0.34 -14.70 16 8 H 0.08 2.13 8.00 -52.48 -0.42 1.71 16 9 C 0.11 2.97 5.24 -106.85 -0.56 2.41 16 10 C -0.23 -5.80 8.17 -38.84 -0.32 -6.12 16 11 C -0.07 -1.60 10.02 -39.69 -0.40 -1.99 16 12 C -0.28 -5.90 9.97 -39.10 -0.39 -6.29 16 13 C 0.16 3.57 6.26 -83.76 -0.52 3.05 16 14 N -0.66 -11.13 5.34 -9.91 -0.05 -11.19 16 15 C 0.53 9.01 7.35 -10.98 -0.08 8.92 16 16 O -0.50 -10.98 12.85 5.55 0.07 -10.91 16 17 C -0.18 -2.01 6.03 -91.77 -0.55 -2.57 16 18 H 0.15 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.13 -1.25 10.06 -26.73 -0.27 -1.52 16 20 C 0.13 1.63 4.32 -26.73 -0.12 1.52 16 21 F -0.12 -2.02 15.71 2.25 0.04 -1.99 16 22 Cl -0.11 -1.14 29.39 -51.86 -1.52 -2.66 16 23 C -0.22 -5.52 8.39 -38.68 -0.32 -5.84 16 24 H 0.30 8.06 7.20 -40.82 -0.29 7.76 16 25 H 0.10 2.71 6.76 -52.49 -0.35 2.36 16 26 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 28 H 0.40 4.99 8.82 -40.82 -0.36 4.63 16 29 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.13 1.31 8.14 -51.92 -0.42 0.88 16 31 H 0.11 2.82 6.43 -52.49 -0.34 2.48 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -31.35 294.33 -8.08 -39.43 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.68 Total: 8.29 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -3.95 Total: -22.07 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.64 Total: -31.39 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.10 Total: 16.86 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.52 Total: -2.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.35 -8.08 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181661958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.455 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds