Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00388 * 2 1 4 4 H 1.48493 * 109.47285 * 270.00241 * 3 2 1 5 5 H 1.48506 * 109.46924 * 30.00002 * 3 2 1 6 6 H 1.48494 * 109.47288 * 149.99878 * 3 2 1 7 7 C 1.38814 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99816 * 0.02562 * 7 2 1 10 10 S 1.65600 * 119.99856 * 179.97438 * 9 7 2 11 11 O 1.42093 * 106.40487 * 311.46006 * 10 9 7 12 12 O 1.42102 * 106.40228 * 178.53654 * 10 9 7 13 13 C 1.76199 * 107.21715 * 65.00014 * 10 9 7 14 14 C 1.31828 * 124.29959 * 89.72342 * 13 10 9 15 15 C 1.45391 * 114.89133 * 179.84317 * 14 13 10 16 16 C 1.41180 * 129.33885 * 180.22311 * 15 14 13 17 17 C 1.36091 * 120.45172 * 180.28165 * 16 15 14 18 18 C 1.38849 * 120.59752 * 359.95933 * 17 16 15 19 19 C 1.37461 * 120.18592 * 359.97438 * 18 17 16 20 20 C 1.39739 * 111.83167 * 0.43123 * 15 14 13 21 21 S 1.75306 * 124.29980 * 270.02442 * 13 10 9 22 22 H 0.97004 * 119.99422 * 0.02562 * 1 2 3 23 23 H 0.97005 * 120.00352 * 359.97438 * 9 7 2 24 24 H 1.08001 * 122.55277 * 0.02562 * 14 13 10 25 25 H 1.07999 * 119.77013 * 0.25627 * 16 15 14 26 26 H 1.08012 * 119.70055 * 179.97438 * 17 16 15 27 27 H 1.07994 * 119.90674 * 180.02562 * 18 17 16 28 28 H 1.08004 * 119.91214 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0005 11 8 3.1357 -3.7185 -1.0210 12 8 1.1739 -4.8511 0.0354 13 6 3.0302 -3.9183 1.5259 14 6 2.5431 -4.4476 2.6306 15 6 3.4451 -4.4223 3.7706 16 6 3.2428 -4.9026 5.0827 17 6 4.2207 -4.7787 6.0210 18 6 5.4324 -4.1793 5.7040 19 6 5.6571 -3.7039 4.4340 20 6 4.6657 -3.8200 3.4543 21 16 4.6582 -3.3154 1.7692 22 1 -0.4849 0.8401 -0.0004 23 1 0.3554 -2.3881 0.0005 24 1 1.5508 -4.8705 2.6840 25 1 2.3055 -5.3713 5.3436 26 1 4.0528 -5.1501 7.0213 27 1 6.2009 -4.0872 6.4572 28 1 6.6014 -3.2389 4.1921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185470604.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -32.041211 kcal Electronic energy + Delta-G solvation = -17254.498663 eV Core-core repulsion = 14295.729839 eV Total energy + Delta-G solvation = -2958.768824 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.34899 -36.09651 -34.97037 -34.75251 -34.71985 -31.10622 -30.97407 -29.24229 -24.65842 -23.65824 -22.84948 -20.71683 -18.58814 -18.21965 -17.88098 -16.62116 -16.07558 -15.65307 -15.10426 -14.65555 -14.35482 -14.17963 -13.71559 -13.57958 -13.43584 -12.80225 -12.07595 -11.77854 -11.43495 -11.27580 -11.24160 -11.17851 -11.04734 -10.93892 -10.65836 -10.51807 -10.35481 -10.17197 -10.11066 -9.57932 -8.56687 -8.39241 -7.48639 -6.63738 -4.00826 0.66600 1.28979 1.42483 1.85118 2.25502 2.31739 3.13416 3.17622 3.20549 3.75206 3.97334 4.37106 4.69385 4.77531 4.89323 4.91720 5.03590 5.29988 5.34412 5.63918 5.69790 5.85537 5.95769 6.13424 6.29241 6.43684 6.60156 6.86401 6.92018 7.32750 8.52368 8.62677 9.07803 10.50822 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.006665 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.851556 B = 4200.124318 C = 4901.496828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.032 3.968 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.261 4.261 8 H 0.108 0.892 9 N -0.932 5.932 10 S 2.599 3.401 11 O -0.964 6.964 12 O -0.998 6.998 13 C -0.718 4.718 14 C -0.011 4.011 15 C -0.093 4.093 16 C -0.069 4.069 17 C -0.132 4.132 18 C -0.102 4.102 19 C -0.090 4.090 20 C -0.138 4.138 21 S 0.176 5.824 22 H 0.278 0.722 23 H 0.411 0.589 24 H 0.153 0.847 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -4.340 10.175 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.177 4.177 3 Si 0.750 3.250 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.405 4.405 8 H 0.126 0.874 9 N -0.683 5.683 10 S 2.687 3.313 11 O -0.954 6.954 12 O -0.986 6.986 13 C -0.909 4.909 14 C -0.043 4.043 15 C -0.103 4.103 16 C -0.089 4.089 17 C -0.152 4.152 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.255 4.255 21 S 0.444 5.556 22 H 0.088 0.912 23 H 0.247 0.753 24 H 0.170 0.830 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.243 -4.354 8.541 12.644 hybrid contribution -0.923 0.385 1.808 2.066 sum 7.320 -3.970 10.349 13.283 Atomic orbital electron populations 1.69697 1.06158 1.28850 1.45844 1.25355 0.95714 0.99833 0.96821 0.85938 0.79491 0.80562 0.78984 1.19763 1.20499 1.18865 1.19507 0.92527 0.82959 1.45463 0.87434 1.52098 1.17200 1.19602 1.79428 1.07929 0.73105 0.74035 0.76183 1.93475 1.61044 1.86918 1.53940 1.93405 1.59405 1.58153 1.87686 1.36757 1.11334 1.14229 1.28544 1.20654 0.99364 0.95123 0.89187 1.19565 0.93562 1.02153 0.95013 1.20762 0.99323 0.97910 0.90937 1.20638 0.93923 1.01235 0.99421 1.21023 0.97416 0.98090 0.95775 1.20483 0.97749 1.00961 0.92088 1.23233 0.98253 1.03914 1.00094 1.83972 1.09700 1.61202 1.00754 0.91179 0.75293 0.82980 0.85554 0.85675 0.85482 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.11 13.06 55.49 0.72 -21.38 15 2 C 0.03 0.80 5.50 -17.43 -0.10 0.70 15 3 Si 0.92 19.10 29.55 -169.99 -5.02 14.08 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.26 -6.47 9.63 -15.06 -0.15 -6.61 15 8 H 0.11 2.57 7.82 -52.49 -0.41 2.16 15 9 N -0.93 -22.28 5.75 31.50 0.18 -22.10 15 10 S 2.60 58.96 5.83 -107.50 -0.63 58.33 15 11 O -0.96 -23.89 17.56 -57.17 -1.00 -24.90 15 12 O -1.00 -23.77 17.70 -57.17 -1.01 -24.78 15 13 C -0.72 -14.61 6.36 28.84 0.18 -14.43 15 14 C -0.01 -0.20 9.99 -38.63 -0.39 -0.59 15 15 C -0.09 -1.56 6.04 -105.37 -0.64 -2.20 15 16 C -0.07 -0.93 10.05 -39.24 -0.39 -1.33 15 17 C -0.13 -1.50 9.95 -40.13 -0.40 -1.90 15 18 C -0.10 -1.15 10.03 -39.64 -0.40 -1.55 15 19 C -0.09 -1.22 10.07 -39.26 -0.40 -1.61 15 20 C -0.14 -2.31 6.48 -38.42 -0.25 -2.56 15 21 S 0.18 3.29 23.04 -107.50 -2.48 0.81 15 22 H 0.28 6.65 8.31 -40.82 -0.34 6.32 15 23 H 0.41 9.85 8.02 -34.47 -0.28 9.58 15 24 H 0.15 2.54 7.98 -52.49 -0.42 2.12 15 25 H 0.13 1.39 8.06 -52.49 -0.42 0.96 15 26 H 0.13 1.04 8.06 -52.48 -0.42 0.61 15 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 15 28 H 0.13 1.41 8.06 -52.48 -0.42 0.99 15 LS Contribution 282.27 15.07 4.25 4.25 Total: -1.00 -29.98 282.27 -9.83 -39.81 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -1.93 Total: 7.95 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: -2.92 Total: -32.07 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.91 Total: -43.48 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -2.02 Total: -49.68 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 62.24 SS G_CDS: -3.10 Total: 59.14 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.98 -9.83 -39.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185470604.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.766 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds