Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99733 * 2 1 4 4 H 1.48496 * 109.47317 * 269.99940 * 3 2 1 5 5 H 1.48505 * 109.47093 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.47100 * 149.99877 * 3 2 1 7 7 C 1.37877 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00392 * 0.02562 * 7 2 1 9 9 S 1.76197 * 119.99806 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40769 * 66.45914 * 9 7 2 11 11 O 1.42099 * 106.40451 * 293.53919 * 9 7 2 12 12 N 1.65601 * 107.21973 * 180.02562 * 9 7 2 13 13 C 1.39069 * 119.99982 * 64.99494 * 12 9 7 14 14 C 1.32769 * 124.34459 * 134.99113 * 13 12 9 15 15 C 1.45329 * 114.71529 * 180.02562 * 14 13 12 16 16 C 1.41195 * 129.23942 * 179.97438 * 15 14 13 17 17 C 1.36165 * 120.45093 * 179.97438 * 16 15 14 18 18 C 1.38773 * 120.55966 * 0.02562 * 17 16 15 19 19 C 1.37602 * 120.19273 * 0.02562 * 18 17 16 20 20 C 1.39713 * 120.20659 * 359.97438 * 19 18 17 21 21 S 1.75287 * 124.34956 * 315.02924 * 13 12 9 22 22 H 0.96997 * 120.00695 * 0.02562 * 1 2 3 23 23 H 0.97005 * 120.00024 * 245.00231 * 12 9 7 24 24 H 1.08002 * 122.64591 * 0.04875 * 14 13 12 25 25 H 1.07994 * 119.77808 * 0.27738 * 16 15 14 26 26 H 1.08003 * 119.71531 * 179.97438 * 17 16 15 27 27 H 1.08002 * 119.90852 * 180.02562 * 18 17 16 28 28 H 1.07996 * 119.89590 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1674 -0.6492 1.2509 11 8 4.1683 -0.6498 -1.2485 12 7 4.2568 -2.7757 0.0011 13 6 3.9768 -3.5904 -1.0907 14 6 4.8523 -4.4137 -1.6550 15 6 4.3364 -5.1674 -2.7855 16 6 4.9920 -6.1157 -3.6006 17 6 4.3292 -6.7216 -4.6242 18 6 3.0003 -6.4167 -4.8827 19 6 2.3376 -5.4954 -4.1045 20 6 2.9983 -4.8617 -3.0491 21 16 2.4231 -3.6613 -1.8992 22 1 -0.4851 0.8400 -0.0004 23 1 4.7392 -3.1341 0.7625 24 1 5.8677 -4.5158 -1.3015 25 1 6.0248 -6.3659 -3.4080 26 1 4.8423 -7.4449 -5.2405 27 1 2.4845 -6.9039 -5.6970 28 1 1.3035 -5.2615 -4.3102 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -34.539264 kcal Electronic energy + Delta-G solvation = -17365.943359 eV Core-core repulsion = 14407.066211 eV Total energy + Delta-G solvation = -2958.877148 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27574 -36.49719 -35.79396 -34.67510 -33.17971 -32.94859 -30.82538 -27.91184 -26.59972 -23.39539 -22.34080 -20.66801 -19.55801 -18.14332 -17.52477 -16.94506 -16.46280 -15.61491 -15.19903 -14.85644 -14.31183 -13.95330 -13.66070 -13.51258 -13.41271 -13.02386 -12.71899 -12.04372 -11.94802 -11.50730 -11.26722 -11.05494 -10.96707 -10.83951 -10.68205 -10.30510 -10.02701 -9.74018 -9.39551 -9.30758 -9.08630 -7.90227 -7.41292 -6.91595 -5.49934 0.94025 1.40873 1.60648 1.77754 2.31513 2.51034 2.99980 3.11068 3.18529 3.85968 3.88468 3.99548 4.48531 4.84609 5.01151 5.02620 5.09701 5.41886 5.46333 5.67583 5.87660 5.91225 5.99307 6.09844 6.29352 6.49040 6.55824 6.61927 7.00046 7.29739 7.35873 8.04229 8.55894 10.19562 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.006029 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.887578 B = 4642.916933 C = 5175.667039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.160 3.840 3 Si 0.800 3.200 4 H -0.243 1.243 5 H -0.252 1.252 6 H -0.222 1.222 7 C -1.012 5.012 8 H 0.129 0.871 9 S 2.652 3.348 10 O -0.992 6.992 11 O -0.989 6.989 12 N -1.032 6.032 13 C 0.104 3.896 14 C -0.173 4.173 15 C -0.054 4.054 16 C -0.087 4.087 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.165 4.165 21 S 0.160 5.840 22 H 0.284 0.716 23 H 0.419 0.581 24 H 0.145 0.855 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -11.378 -6.064 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.062 4.062 3 Si 0.620 3.380 4 H -0.167 1.167 5 H -0.176 1.176 6 H -0.144 1.144 7 C -1.148 5.148 8 H 0.147 0.853 9 S 2.755 3.245 10 O -0.983 6.983 11 O -0.978 6.978 12 N -0.779 5.779 13 C -0.110 4.110 14 C -0.208 4.208 15 C -0.063 4.063 16 C -0.107 4.107 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.098 4.098 20 C -0.281 4.281 21 S 0.424 5.576 22 H 0.094 0.906 23 H 0.255 0.745 24 H 0.163 0.837 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.581 -9.637 -5.824 12.156 hybrid contribution 1.119 -0.384 0.265 1.213 sum 5.700 -10.021 -5.559 12.799 Atomic orbital electron populations 1.69960 1.06452 1.29327 1.38166 1.24321 0.94789 0.98551 0.88505 0.87876 0.83502 0.84538 0.82102 1.16674 1.17582 1.14413 1.30217 1.14293 1.02558 1.67692 0.85299 1.02331 0.78266 0.70009 0.73928 1.93515 1.85680 1.74308 1.44763 1.93466 1.85001 1.74500 1.44865 1.53237 1.71009 1.30160 1.23456 1.20976 0.97031 0.98560 0.94434 1.20889 1.00023 1.02404 0.97482 1.18935 0.92705 0.98318 0.96370 1.20637 0.99492 0.95568 0.94963 1.20595 0.94954 1.00592 0.98162 1.20953 0.94910 0.98456 0.99623 1.20469 0.99597 0.96234 0.93509 1.23149 0.98255 1.03567 1.03086 1.85662 1.07636 1.38700 1.25652 0.90585 0.74458 0.83743 0.85979 0.85991 0.85719 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.46 13.96 55.43 0.77 -21.68 15 2 C 0.16 4.42 5.47 -17.82 -0.10 4.32 15 3 Si 0.80 19.99 26.54 -169.99 -4.51 15.48 15 4 H -0.24 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.25 -5.76 7.11 56.52 0.40 -5.35 15 6 H -0.22 -5.66 5.61 56.52 0.32 -5.34 15 7 C -1.01 -27.23 9.02 30.60 0.28 -26.96 15 8 H 0.13 3.45 6.83 -52.49 -0.36 3.09 15 9 S 2.65 65.73 4.10 -107.50 -0.44 65.29 15 10 O -0.99 -25.94 16.02 -57.17 -0.92 -26.86 15 11 O -0.99 -26.37 16.55 -57.17 -0.95 -27.32 15 12 N -1.03 -20.24 5.85 31.24 0.18 -20.06 15 13 C 0.10 1.99 6.53 -16.14 -0.11 1.89 15 14 C -0.17 -2.84 10.41 -38.64 -0.40 -3.25 15 15 C -0.05 -0.85 6.04 -105.39 -0.64 -1.49 15 16 C -0.09 -1.10 10.05 -39.21 -0.39 -1.49 15 17 C -0.12 -1.36 9.95 -40.13 -0.40 -1.76 15 18 C -0.12 -1.36 10.03 -39.62 -0.40 -1.76 15 19 C -0.08 -1.05 10.07 -39.26 -0.40 -1.45 15 20 C -0.16 -2.75 6.47 -38.46 -0.25 -3.00 15 21 S 0.16 3.13 20.51 -107.50 -2.20 0.92 15 22 H 0.28 7.12 8.31 -40.82 -0.34 6.78 15 23 H 0.42 6.63 8.95 -34.47 -0.31 6.32 15 24 H 0.14 1.96 8.06 -52.49 -0.42 1.53 15 25 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 26 H 0.12 0.99 8.06 -52.48 -0.42 0.56 15 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 15 28 H 0.13 1.53 8.06 -52.49 -0.42 1.10 15 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -31.73 271.75 -8.77 -40.50 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.00 Total: 4.58 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: -2.80 Total: -34.95 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.96 Total: -41.74 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.86 Total: -54.18 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.51 Total: 15.48 kcal Atomic # 16 Polarization: 68.85 SS G_CDS: -2.65 Total: 66.21 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.73 -8.77 -40.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.963 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds