Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48496 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47051 * 300.00217 * 3 2 1 6 6 H 1.48499 * 109.46712 * 60.00314 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00110 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40063 * 66.46644 * 9 7 2 11 11 O 1.42097 * 106.40586 * 293.54222 * 9 7 2 12 12 N 1.65608 * 107.21621 * 180.02562 * 9 7 2 13 13 C 1.47015 * 125.64674 * 90.00297 * 12 9 7 14 14 C 1.54329 * 107.27287 * 181.01992 * 13 12 9 15 15 C 1.55163 * 102.93710 * 22.19304 * 14 13 12 16 16 H 1.08996 * 110.99919 * 206.42658 * 15 14 13 17 17 Br 1.96593 * 111.00400 * 82.61027 * 15 14 13 18 18 C 1.47416 * 125.64729 * 269.68811 * 12 9 7 19 19 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.88587 * 300.43802 * 13 12 9 21 21 H 1.09001 * 109.88718 * 61.44601 * 13 12 9 22 22 H 1.08999 * 110.71936 * 140.55164 * 14 13 12 23 23 H 1.08997 * 110.72278 * 263.83310 * 14 13 12 24 24 H 1.09002 * 110.37453 * 274.75111 * 18 12 9 25 25 H 1.09001 * 110.36892 * 37.07791 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.8302 -4.5643 1.1941 14 6 3.8442 -5.6212 0.7078 15 6 4.1916 -5.1361 -0.7245 16 1 4.5069 -5.9688 -1.3532 17 35 5.5670 -3.7321 -0.6787 18 6 2.8271 -4.5704 -1.1984 19 1 -0.4850 0.8400 0.0004 20 1 3.3390 -3.8129 1.7981 21 1 2.0458 -5.0422 1.7809 22 1 4.7320 -5.6235 1.3401 23 1 3.3868 -6.6102 0.6796 24 1 2.1818 -5.3752 -1.5506 25 1 2.9763 -3.8309 -1.9852 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961587.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -89.665629 kcal Electronic energy + Delta-G solvation = -13747.378221 eV Core-core repulsion = 11126.497208 eV Total energy + Delta-G solvation = -2620.881013 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 282.966 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.98949 -35.24013 -33.96408 -33.05592 -31.16712 -29.38256 -28.05298 -26.07313 -22.01243 -20.67924 -18.72242 -17.57799 -16.30696 -15.89338 -15.01282 -14.22893 -13.91989 -13.57262 -13.35348 -12.87690 -12.35362 -11.95886 -11.55184 -11.29553 -11.20354 -11.17363 -10.63651 -10.55086 -10.42968 -10.29912 -10.21087 -9.69797 -9.59483 -9.22325 -8.89143 -8.18823 -6.66478 -5.26979 1.84564 2.21964 3.08357 3.16497 3.25374 4.08947 4.31567 4.44889 4.68147 4.91476 5.03378 5.40923 5.49728 5.74462 5.76755 5.92129 5.95884 6.08052 6.28564 6.31206 6.80729 7.37761 7.42264 8.07074 8.94045 10.27261 Molecular weight = 282.97amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.009142 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.629547 B = 3061.919248 C = 3886.706420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.014 5.014 8 H 0.107 0.893 9 S 2.726 3.274 10 O -1.001 7.001 11 O -1.000 7.000 12 N -1.018 6.018 13 C 0.122 3.878 14 C -0.122 4.122 15 C -0.062 4.062 16 H 0.117 0.883 17 Br -0.147 7.147 18 C 0.133 3.867 19 H 0.290 0.710 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.381 -9.901 -0.813 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.147 5.147 8 H 0.125 0.875 9 S 2.828 3.172 10 O -0.991 6.991 11 O -0.991 6.991 12 N -0.853 5.853 13 C -0.004 4.004 14 C -0.161 4.161 15 C -0.160 4.160 16 H 0.135 0.865 17 Br -0.067 7.067 18 C 0.006 3.994 19 H 0.100 0.900 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.651 -9.438 -0.790 14.253 hybrid contribution 0.735 0.934 -0.031 1.189 sum 11.386 -8.504 -0.821 14.235 Atomic orbital electron populations 1.69903 1.06794 1.30589 1.40623 1.24745 0.94410 1.00778 0.88473 0.86158 0.80637 0.80452 0.78502 1.18503 1.19636 1.19646 1.30622 1.06466 1.11411 1.66243 0.87524 1.00216 0.71561 0.72634 0.72771 1.93361 1.72466 1.87511 1.45812 1.93357 1.72496 1.87477 1.45766 1.59222 1.61902 1.54104 1.10115 1.21543 0.95501 0.95014 0.88332 1.22915 1.00011 0.99434 0.93758 1.25881 0.93774 0.95192 1.01165 0.86466 1.97395 1.54344 1.55598 1.99371 1.22002 0.90182 0.98014 0.89230 0.89993 0.91373 0.91408 0.89458 0.89492 0.90690 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.23 13.19 55.43 0.73 -24.50 15 2 C 0.13 3.77 5.46 -17.82 -0.10 3.67 15 3 Si 0.92 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.26 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -1.01 -28.22 9.75 30.60 0.30 -27.92 15 8 H 0.11 2.78 7.81 -52.49 -0.41 2.37 15 9 S 2.73 72.95 5.22 -107.50 -0.56 72.39 15 10 O -1.00 -29.28 17.60 -57.17 -1.01 -30.28 15 11 O -1.00 -29.40 17.60 -57.17 -1.01 -30.40 15 12 N -1.02 -20.37 3.70 -111.29 -0.41 -20.78 15 13 C 0.12 1.99 6.90 -3.07 -0.02 1.97 15 14 C -0.12 -1.41 6.47 -24.89 -0.16 -1.57 15 15 C -0.06 -0.78 4.15 -24.46 -0.10 -0.88 15 16 H 0.12 1.08 8.14 -51.93 -0.42 0.66 15 17 Br -0.15 -2.14 33.41 -68.01 -2.27 -4.41 15 18 C 0.13 2.14 6.51 -2.41 -0.02 2.12 15 19 H 0.29 7.72 8.31 -40.82 -0.34 7.38 15 20 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.09 0.89 8.06 -51.93 -0.42 0.47 15 23 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.09 1.47 8.08 -51.93 -0.42 1.05 15 LS Contribution 253.80 15.07 3.82 3.82 Total: -1.00 -34.70 253.80 -8.32 -43.01 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -2.50 Total: -2.24 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -0.10 Total: -22.61 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.32 Total: -45.27 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -2.01 Total: -60.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 72.95 SS G_CDS: -0.56 Total: 72.39 kcal Atomic # 35 Polarization: -2.14 SS G_CDS: -2.27 Total: -4.41 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -34.70 -8.32 -43.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961587.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.651 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds