Wall clock time and date at job start Tue Mar 31 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00512 * 2 1 4 4 H 1.48496 * 109.47090 * 270.00534 * 3 2 1 5 5 H 1.48507 * 109.46680 * 29.99777 * 3 2 1 6 6 H 1.48492 * 109.47269 * 149.99916 * 3 2 1 7 7 C 1.37875 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99882 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00226 * 179.97438 * 7 2 1 10 10 O 1.42104 * 106.39926 * 66.46284 * 9 7 2 11 11 O 1.42095 * 106.40179 * 293.53795 * 9 7 2 12 12 N 1.65606 * 107.21719 * 180.02562 * 9 7 2 13 13 C 1.47426 * 125.64620 * 269.95604 * 12 9 7 14 14 C 1.54914 * 104.82992 * 204.16562 * 13 12 9 15 15 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 16 16 H 1.09002 * 110.85092 * 153.69981 * 15 14 13 17 17 Br 1.96596 * 110.69295 * 277.05043 * 15 14 13 18 18 C 1.47018 * 125.64862 * 90.00195 * 12 9 7 19 19 H 0.97001 * 119.99808 * 0.02562 * 1 2 3 20 20 H 1.08999 * 110.36956 * 323.00938 * 13 12 9 21 21 H 1.09003 * 110.36599 * 85.32843 * 13 12 9 22 22 H 1.09000 * 111.00339 * 81.07133 * 14 13 12 23 23 H 1.09000 * 111.00165 * 204.88167 * 14 13 12 24 24 H 1.09002 * 109.88241 * 298.32128 * 18 12 9 25 25 H 1.09000 * 109.88049 * 59.33257 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1941 -0.0001 10 8 4.1682 -0.6489 1.2491 11 8 4.1673 -0.6506 -1.2504 12 7 4.2566 -2.7760 0.0000 13 6 4.5122 -3.5962 1.1981 14 6 5.4942 -4.6962 0.7235 15 6 4.9724 -4.9855 -0.7115 16 1 5.7725 -5.3676 -1.3456 17 35 3.4616 -6.2424 -0.6611 18 6 4.5098 -3.5947 -1.1946 19 1 -0.4850 0.8401 -0.0004 20 1 4.9695 -2.9915 1.9813 21 1 3.5851 -4.0440 1.5561 22 1 6.5175 -4.3215 0.6969 23 1 5.4214 -5.5830 1.3531 24 1 3.5946 -3.6908 -1.7789 25 1 5.2899 -3.1345 -1.8009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961588.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:43 Heat of formation + Delta-G solvation = -75.207065 kcal Electronic energy + Delta-G solvation = -13715.235273 eV Core-core repulsion = 11094.981230 eV Total energy + Delta-G solvation = -2620.254043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 282.966 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.10537 -35.69907 -34.48351 -33.02894 -31.38677 -29.45415 -28.16079 -26.38987 -22.25311 -20.75646 -18.78735 -17.65320 -16.80630 -15.99508 -15.26033 -14.53880 -13.75997 -13.63886 -13.42714 -13.01012 -12.79357 -12.41859 -11.70750 -11.54140 -11.46803 -11.24540 -10.83039 -10.73878 -10.67074 -10.49024 -9.91979 -9.77750 -9.72075 -9.21267 -9.14819 -8.28923 -6.79886 -5.33615 1.68672 1.93438 3.06144 3.16725 3.25128 3.94266 4.10580 4.26947 4.59528 4.60168 4.93120 5.34780 5.37154 5.40770 5.70052 5.80909 5.86905 5.91075 6.07381 6.20783 6.56524 7.11988 7.49237 8.24433 8.70753 10.32652 Molecular weight = 282.97amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.006960 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.538989 B = 4021.921929 C = 4418.639478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.800 3.200 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.123 0.877 9 S 2.690 3.310 10 O -1.002 7.002 11 O -1.006 7.006 12 N -1.011 6.011 13 C 0.117 3.883 14 C -0.124 4.124 15 C -0.058 4.058 16 H 0.120 0.880 17 Br -0.151 7.151 18 C 0.129 3.871 19 H 0.281 0.719 20 H 0.085 0.915 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.123 -12.420 -0.534 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.067 4.067 3 Si 0.620 3.380 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.141 0.859 9 S 2.794 3.206 10 O -0.992 6.992 11 O -0.996 6.996 12 N -0.847 5.847 13 C -0.009 4.009 14 C -0.163 4.163 15 C -0.155 4.155 16 H 0.138 0.862 17 Br -0.071 7.071 18 C 0.002 3.998 19 H 0.091 0.909 20 H 0.104 0.896 21 H 0.088 0.912 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.010 -11.936 -0.518 14.964 hybrid contribution -0.264 0.637 -0.088 0.695 sum 8.745 -11.299 -0.607 14.301 Atomic orbital electron populations 1.69993 1.06559 1.29007 1.39536 1.24432 0.94792 0.98749 0.88693 0.87889 0.83595 0.84641 0.81856 1.16973 1.17790 1.14237 1.30509 1.15545 1.02257 1.66601 0.85935 1.01026 0.77216 0.69130 0.73196 1.93459 1.85455 1.75039 1.45296 1.93402 1.85441 1.75370 1.45397 1.58660 1.85218 1.30033 1.10766 1.21957 0.98498 0.92020 0.88426 1.23110 1.00075 0.99835 0.93318 1.25734 0.93818 0.94331 1.01614 0.86204 1.97398 1.48190 1.62193 1.99355 1.21772 1.01801 0.87803 0.88381 0.90894 0.89637 0.91167 0.89229 0.89096 0.90291 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.96 13.96 55.43 0.77 -23.19 15 2 C 0.15 4.43 5.47 -17.82 -0.10 4.33 15 3 Si 0.80 20.61 26.54 -169.99 -4.51 16.10 15 4 H -0.25 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.25 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.22 -5.75 5.60 56.52 0.32 -5.43 15 7 C -1.01 -28.65 10.29 30.60 0.31 -28.33 15 8 H 0.12 3.54 8.06 -52.48 -0.42 3.11 15 9 S 2.69 67.44 4.44 -107.50 -0.48 66.97 15 10 O -1.00 -26.67 15.34 -57.17 -0.88 -27.54 15 11 O -1.01 -26.71 16.42 -57.17 -0.94 -27.65 15 12 N -1.01 -19.53 3.70 -111.42 -0.41 -19.94 15 13 C 0.12 1.84 7.00 -2.53 -0.02 1.82 15 14 C -0.12 -1.40 6.60 -24.44 -0.16 -1.57 15 15 C -0.06 -0.69 4.09 -24.76 -0.10 -0.79 15 16 H 0.12 1.08 8.14 -51.93 -0.42 0.65 15 17 Br -0.15 -1.99 33.17 -68.01 -2.26 -4.24 15 18 C 0.13 2.05 6.61 -3.07 -0.02 2.03 15 19 H 0.28 7.40 8.31 -40.82 -0.34 7.06 15 20 H 0.09 1.33 7.78 -51.93 -0.40 0.93 15 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 23 H 0.09 0.86 8.06 -51.93 -0.42 0.44 15 24 H 0.08 1.31 7.82 -51.93 -0.41 0.91 15 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -32.47 246.02 -7.64 -40.10 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -2.56 Total: -1.81 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -0.08 Total: -22.50 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.36 Total: -43.13 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -1.82 Total: -55.20 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.51 Total: 16.10 kcal Atomic # 16 Polarization: 67.44 SS G_CDS: -0.48 Total: 66.97 kcal Atomic # 35 Polarization: -1.99 SS G_CDS: -2.26 Total: -4.24 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.47 -7.64 -40.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961588.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.106 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds