Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21246 * 120.00242 * 2 1 4 4 C 1.47195 * 119.99996 * 179.97438 * 2 1 3 5 5 C 1.39882 * 120.13476 * 359.97438 * 4 2 1 6 6 C 1.37914 * 119.97311 * 180.02562 * 5 4 2 7 7 C 1.38290 * 120.25882 * 359.72724 * 6 5 4 8 8 C 1.50695 * 119.86455 * 180.27245 * 7 6 5 9 9 C 1.39025 * 120.27353 * 0.54771 * 7 6 5 10 10 N 1.39710 * 119.99052 * 179.72450 * 9 7 6 11 11 S 1.65598 * 119.99967 * 146.38057 * 10 9 7 12 12 O 1.42101 * 106.40446 * 181.27352 * 11 10 9 13 13 O 1.42100 * 106.40291 * 314.19571 * 11 10 9 14 14 C 1.76200 * 107.21925 * 67.73661 * 11 10 9 15 15 H 1.08002 * 120.00057 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99847 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99512 * 179.97438 * 16 14 11 18 18 Si 1.86796 * 120.00254 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47047 * 89.99952 * 18 16 14 20 20 H 1.48497 * 109.47019 * 210.00055 * 18 16 14 21 21 H 1.48497 * 109.46937 * 329.99754 * 18 16 14 22 22 C 1.38612 * 120.01934 * 359.45218 * 9 7 6 23 23 H 1.09000 * 109.47099 * 269.99965 * 1 2 3 24 24 H 1.09001 * 109.47248 * 29.99988 * 1 2 3 25 25 H 1.09004 * 109.46972 * 149.99995 * 1 2 3 26 26 H 1.07994 * 120.01703 * 0.04468 * 5 4 2 27 27 H 1.08004 * 119.87200 * 180.02562 * 6 5 4 28 28 H 1.09008 * 109.47255 * 270.27154 * 8 7 6 29 29 H 1.08999 * 109.47650 * 30.27204 * 8 7 6 30 30 H 1.09006 * 109.47456 * 150.27719 * 8 7 6 31 31 H 0.96996 * 120.00107 * 326.10153 * 10 9 7 32 32 H 0.97009 * 119.99972 * 180.02562 * 17 16 14 33 33 H 1.07994 * 120.13148 * 180.25353 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2393 -3.6802 0.0027 7 6 3.6222 -3.6826 -0.0030 8 6 4.3703 -4.9907 -0.0080 9 6 4.3251 -2.4831 0.0017 10 7 5.7222 -2.4925 0.0017 11 16 6.5581 -1.3007 -0.7877 12 8 7.9370 -1.6053 -0.6292 13 8 5.9368 -1.1478 -2.0565 14 6 6.2767 0.2019 0.0885 15 1 5.6495 0.2050 0.9677 16 6 6.8564 1.3739 -0.3490 17 7 6.6459 2.4955 0.3047 18 14 7.9394 1.3690 -1.8709 19 1 7.1054 1.6241 -3.0728 20 1 8.9696 2.4315 -1.7487 21 1 8.6043 0.0476 -2.0010 22 6 3.6403 -1.2780 0.0006 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 0.4664 -2.4907 0.0013 27 1 1.6998 -4.6159 0.0031 28 1 4.5507 -5.3101 1.0186 29 1 3.7782 -5.7460 -0.5247 30 1 5.3234 -4.8623 -0.5212 31 1 6.2025 -3.1947 0.4675 32 1 7.0534 3.3202 -0.0032 33 1 4.1845 -0.3452 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = -91.784767 kcal Electronic energy + Delta-G solvation = -20484.548114 eV Core-core repulsion = 17216.268838 eV Total energy + Delta-G solvation = -3268.279276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.88484 -38.32617 -35.79529 -34.70937 -34.58378 -33.10781 -32.54569 -30.29196 -28.91985 -26.75161 -26.46801 -22.48238 -22.25514 -19.69126 -19.07462 -17.78018 -17.15223 -16.76099 -15.92907 -15.34646 -14.98388 -14.76232 -14.66798 -14.16596 -13.95271 -13.69229 -13.45512 -13.33596 -12.87246 -12.40097 -12.21000 -12.12944 -11.96193 -11.77445 -11.48044 -11.42089 -10.96940 -10.89598 -10.76572 -10.57537 -10.42443 -9.88440 -9.42944 -9.21578 -9.06233 -8.55889 -7.84552 -6.81707 -5.39454 0.93519 1.61842 1.84789 2.69438 3.05193 3.17029 3.23656 3.92364 3.98832 4.04105 4.33886 4.56202 4.90709 5.02100 5.13092 5.19842 5.21859 5.32754 5.47814 5.57007 5.59642 5.64883 5.75729 5.93510 5.97140 6.06927 6.19873 6.42688 6.50561 6.63383 6.82193 7.08463 7.43723 7.56177 7.87972 8.14114 8.65610 10.29409 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.008292 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.063444 B = 3376.014870 C = 4700.099486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.384 3.616 3 O -0.436 6.436 4 C -0.146 4.146 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.095 4.095 8 C -0.117 4.117 9 C 0.176 3.824 10 N -1.057 6.057 11 S 2.660 3.340 12 O -0.999 6.999 13 O -0.994 6.994 14 C -1.018 5.018 15 H 0.130 0.870 16 C 0.157 3.843 17 N -0.809 5.809 18 Si 0.800 3.200 19 H -0.244 1.244 20 H -0.253 1.253 21 H -0.222 1.222 22 C -0.107 4.107 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.416 0.584 32 H 0.282 0.718 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -11.424 1.030 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.260 3.740 3 O -0.309 6.309 4 C -0.148 4.148 5 C -0.123 4.123 6 C -0.132 4.132 7 C -0.099 4.099 8 C -0.173 4.173 9 C 0.078 3.922 10 N -0.800 5.800 11 S 2.763 3.237 12 O -0.989 6.989 13 O -0.984 6.984 14 C -1.152 5.152 15 H 0.147 0.853 16 C -0.065 4.065 17 N -0.437 5.437 18 Si 0.620 3.380 19 H -0.168 1.168 20 H -0.177 1.177 21 H -0.144 1.144 22 C -0.128 4.128 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.986 -10.679 0.187 14.622 hybrid contribution 0.400 0.149 0.179 0.463 sum -9.586 -10.530 0.366 14.244 Atomic orbital electron populations 1.22209 0.94125 1.04589 1.04397 1.22485 0.91388 0.87922 0.72236 1.90657 1.71837 1.33969 1.34447 1.20280 0.93635 0.94854 1.05984 1.21279 0.99630 0.91401 1.00033 1.20718 0.92695 0.97977 1.01848 1.19941 0.94074 0.94147 1.01772 1.20775 1.00481 0.93734 1.02352 1.17137 0.82775 0.93262 0.98982 1.53726 1.11830 1.45207 1.69270 1.02029 0.72316 0.75125 0.74236 1.93496 1.32644 1.85654 1.87118 1.93459 1.77084 1.86376 1.41465 1.30365 1.44918 1.11025 1.28936 0.85264 1.24375 0.92454 0.94272 0.95355 1.69984 1.37288 0.99489 1.36899 0.87885 0.82480 0.83649 0.84012 1.16799 1.17670 1.14419 1.22352 0.94535 0.99680 0.96220 0.88778 0.89648 0.89701 0.85228 0.85494 0.90971 0.91122 0.91304 0.74992 0.90705 0.80670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 9.75 36.00 0.35 -1.73 16 2 C 0.38 6.44 7.23 -30.68 -0.22 6.22 16 3 O -0.44 -9.57 17.09 5.59 0.10 -9.48 16 4 C -0.15 -2.50 5.87 -105.08 -0.62 -3.11 16 5 C -0.10 -1.33 9.36 -39.08 -0.37 -1.70 16 6 C -0.11 -1.41 9.67 -39.68 -0.38 -1.79 16 7 C -0.09 -1.40 5.90 -104.31 -0.62 -2.02 16 8 C -0.12 -1.33 9.45 36.00 0.34 -0.99 16 9 C 0.18 3.33 6.16 -83.84 -0.52 2.82 16 10 N -1.06 -20.81 5.22 32.38 0.17 -20.64 16 11 S 2.66 67.16 3.85 -107.50 -0.41 66.75 16 12 O -1.00 -26.58 16.02 -57.17 -0.92 -27.49 16 13 O -0.99 -27.00 16.25 -57.17 -0.93 -27.93 16 14 C -1.02 -28.52 8.13 30.60 0.25 -28.27 16 15 H 0.13 3.66 7.11 -52.49 -0.37 3.29 16 16 C 0.16 4.54 5.47 -17.82 -0.10 4.44 16 17 N -0.81 -23.62 13.96 55.43 0.77 -22.84 16 18 Si 0.80 20.74 26.54 -169.99 -4.51 16.23 16 19 H -0.24 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.25 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.22 -5.82 5.61 56.52 0.32 -5.50 16 22 C -0.11 -2.23 8.50 -38.88 -0.33 -2.56 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.67 6.47 -51.93 -0.34 0.34 16 26 H 0.13 1.14 6.35 -52.49 -0.33 0.81 16 27 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 28 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.23 16 30 H 0.07 0.82 7.14 -51.93 -0.37 0.45 16 31 H 0.42 6.67 7.92 -34.47 -0.27 6.39 16 32 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.18 4.31 4.04 -52.49 -0.21 4.10 16 LS Contribution 292.14 15.07 4.40 4.40 Total: -1.00 -35.30 292.14 -6.77 -42.07 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.23 Total: 7.64 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -2.21 Total: -28.70 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.94 Total: -43.49 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -1.75 Total: -64.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.51 Total: 16.23 kcal Atomic # 16 Polarization: 67.16 SS G_CDS: -0.41 Total: 66.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.30 -6.77 -42.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.720 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds