Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21313 * 119.99662 * 2 1 4 4 C 1.46650 * 119.99883 * 180.02562 * 2 1 3 5 5 C 1.40058 * 120.24317 * 359.97438 * 4 2 1 6 6 C 1.37624 * 119.89946 * 180.25695 * 5 4 2 7 7 C 1.38708 * 120.39116 * 359.44507 * 6 5 4 8 8 C 1.50703 * 119.75124 * 180.28552 * 7 6 5 9 9 C 1.37928 * 120.49350 * 0.56023 * 7 6 5 10 10 C 1.38965 * 120.09108 * 359.72270 * 9 7 6 11 11 N 1.38691 * 120.19885 * 179.97438 * 10 9 7 12 12 S 1.65602 * 120.00045 * 324.56710 * 11 10 9 13 13 O 1.42096 * 106.40332 * 181.42723 * 12 11 10 14 14 O 1.42099 * 106.40176 * 314.34895 * 12 11 10 15 15 C 1.76204 * 107.21434 * 67.88671 * 12 11 10 16 16 H 1.08003 * 119.99909 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99792 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00190 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99744 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47349 * 90.00120 * 19 17 15 21 21 H 1.48500 * 109.46915 * 209.99946 * 19 17 15 22 22 H 1.48501 * 109.47323 * 329.99909 * 19 17 15 23 23 H 1.08996 * 109.47027 * 239.99682 * 1 2 3 24 24 H 1.08994 * 109.46947 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46974 * 119.99706 * 1 2 3 26 26 H 1.07998 * 120.05272 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.80396 * 179.70429 * 6 5 4 28 28 H 1.09006 * 109.46723 * 270.27541 * 8 7 6 29 29 H 1.09000 * 109.47427 * 30.27073 * 8 7 6 30 30 H 1.08997 * 109.47216 * 150.27897 * 8 7 6 31 31 H 1.07998 * 119.95850 * 179.74685 * 9 7 6 32 32 H 0.97004 * 119.99948 * 144.57564 * 11 10 9 33 33 H 0.97001 * 119.99932 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 -0.0006 5 6 1.5451 -2.4859 -0.0006 6 6 2.2403 -3.6736 0.0042 7 6 3.6274 -3.6749 -0.0025 8 6 4.3741 -4.9839 -0.0036 9 6 4.3284 -2.4870 -0.0024 10 6 3.6469 -1.2759 -0.0015 11 7 4.3495 -0.0801 -0.0009 12 16 5.7767 0.0413 0.8302 13 8 6.2247 1.3797 0.6651 14 8 5.5522 -0.5518 2.1018 15 6 6.9498 -0.9816 0.0042 16 1 6.6585 -1.5347 -0.8765 17 6 8.2399 -1.0749 0.4815 18 7 8.5948 -0.4009 1.5536 19 14 9.4838 -2.1587 -0.3946 20 1 10.1895 -1.3638 -1.4316 21 1 10.4693 -2.6756 0.5887 22 1 8.7815 -3.2984 -1.0374 23 1 -0.3633 -0.5139 0.8899 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 0.4652 -2.4915 0.0003 27 1 1.7027 -4.6103 0.0091 28 1 4.5548 -5.2999 1.0239 29 1 3.7807 -5.7403 -0.5173 30 1 5.3268 -4.8583 -0.5179 31 1 5.4083 -2.4980 -0.0036 32 1 4.0049 0.6852 -0.4873 33 1 9.5024 -0.4669 1.8896 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -107.895313 kcal Electronic energy + Delta-G solvation = -20519.796307 eV Core-core repulsion = 17250.818426 eV Total energy + Delta-G solvation = -3268.977882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03092 -38.07967 -35.37810 -34.73192 -34.08080 -33.21685 -32.74598 -29.86074 -28.81520 -26.99728 -26.23727 -22.51332 -21.91446 -19.90285 -18.87011 -17.82989 -16.70022 -16.32985 -16.31294 -15.44734 -14.94606 -14.70917 -14.23862 -14.07049 -13.96630 -13.73143 -13.50296 -13.28889 -12.36949 -12.23911 -12.12369 -12.08011 -11.89459 -11.64403 -11.53370 -11.28321 -10.92904 -10.66200 -10.61827 -10.42640 -10.30195 -10.25748 -9.37866 -9.30830 -8.89770 -8.51616 -7.78781 -6.80141 -5.44817 0.93116 1.70064 2.13995 2.63768 3.01286 3.08523 3.13397 3.96233 4.02810 4.26923 4.49538 4.55109 4.93589 5.05069 5.16902 5.32535 5.38877 5.42563 5.57400 5.66187 5.73587 5.81298 5.83870 5.98851 6.05529 6.22470 6.38361 6.45148 6.53955 6.79107 6.93645 7.15225 7.25989 7.67691 7.81433 7.92375 8.76018 10.14123 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.007490 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.633827 B = 3737.492867 C = 4882.668001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.465 6.465 4 C -0.234 4.234 5 C -0.046 4.046 6 C -0.173 4.173 7 C -0.019 4.019 8 C -0.121 4.121 9 C -0.191 4.191 10 C 0.268 3.732 11 N -1.056 6.056 12 S 2.698 3.302 13 O -0.993 6.993 14 O -0.990 6.990 15 C -1.023 5.023 16 H 0.110 0.890 17 C 0.134 3.866 18 N -0.839 5.839 19 Si 0.922 3.078 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.260 1.260 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.168 0.832 32 H 0.424 0.576 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 -8.474 -5.067 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.276 3.724 3 O -0.342 6.342 4 C -0.240 4.240 5 C -0.065 4.065 6 C -0.192 4.192 7 C -0.020 4.020 8 C -0.177 4.177 9 C -0.212 4.212 10 C 0.165 3.835 11 N -0.800 5.800 12 S 2.799 3.201 13 O -0.984 6.984 14 O -0.980 6.980 15 C -1.156 5.156 16 H 0.128 0.872 17 C -0.085 4.085 18 N -0.468 5.468 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.184 1.184 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.263 0.737 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.970 -7.320 -4.045 14.602 hybrid contribution 0.621 -0.603 -1.024 1.341 sum -11.349 -7.922 -5.069 14.740 Atomic orbital electron populations 1.22204 0.94068 1.04753 1.04222 1.22254 0.91474 0.87576 0.71108 1.90439 1.71702 1.34478 1.37566 1.20251 0.92796 0.95254 1.15661 1.21109 0.99250 0.90993 0.95164 1.20810 0.93514 0.97820 1.07046 1.19922 0.93584 0.94963 0.93518 1.20906 1.00371 0.93492 1.02972 1.21932 1.03536 0.90369 1.05343 1.17580 0.89970 0.86210 0.89772 1.54372 1.42007 1.17471 1.66129 1.01182 0.71091 0.74421 0.73417 1.93396 1.79183 1.39053 1.86723 1.93403 1.84951 1.79104 1.40515 1.30567 1.10974 1.46548 1.27528 0.87167 1.24757 0.97894 0.93010 0.92823 1.69891 1.21799 1.35680 1.19440 0.86129 0.79448 0.80202 0.79657 1.19067 1.19836 1.18402 0.89036 0.89992 0.89087 0.85336 0.85835 0.90404 0.91477 0.90811 0.81534 0.73675 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 8.93 36.01 0.32 -1.62 16 2 C 0.40 6.21 7.21 -30.91 -0.22 5.99 16 3 O -0.46 -9.02 14.66 5.53 0.08 -8.94 16 4 C -0.23 -3.89 5.89 -104.90 -0.62 -4.51 16 5 C -0.05 -0.59 9.46 -39.12 -0.37 -0.96 16 6 C -0.17 -2.21 9.66 -39.63 -0.38 -2.60 16 7 C -0.02 -0.29 5.88 -104.56 -0.62 -0.90 16 8 C -0.12 -1.49 10.00 36.01 0.36 -1.13 16 9 C -0.19 -3.71 8.66 -39.43 -0.34 -4.05 16 10 C 0.27 5.43 6.16 -83.57 -0.51 4.92 16 11 N -1.06 -24.01 5.06 32.58 0.16 -23.85 16 12 S 2.70 74.44 4.66 -107.50 -0.50 73.94 16 13 O -0.99 -30.29 18.02 -57.17 -1.03 -31.32 16 14 O -0.99 -29.62 17.49 -57.17 -1.00 -30.62 16 15 C -1.02 -27.43 7.64 30.60 0.23 -27.19 16 16 H 0.11 2.65 6.75 -52.48 -0.35 2.29 16 17 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 18 N -0.84 -24.26 13.19 55.43 0.73 -23.53 16 19 Si 0.92 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 24 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 25 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.13 1.11 7.05 -52.49 -0.37 0.74 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.07 0.93 8.08 -51.93 -0.42 0.52 16 31 H 0.17 3.53 4.40 -52.49 -0.23 3.30 16 32 H 0.42 9.12 6.57 -34.47 -0.23 8.89 16 33 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 298.61 15.07 4.50 4.50 Total: -1.00 -35.87 298.61 -7.58 -43.46 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.26 Total: 10.12 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -2.25 Total: -28.53 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.90 Total: -47.38 kcal Atomic # 8 Polarization: -68.94 SS G_CDS: -1.95 Total: -70.89 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 74.44 SS G_CDS: -0.50 Total: 73.94 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.87 -7.58 -43.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.437 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds