Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47043 * 2 1 4 4 O 1.21307 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.46750 * 120.00278 * 179.97438 * 3 2 1 6 6 C 1.40114 * 120.08956 * 359.72953 * 5 3 2 7 7 C 1.36546 * 119.89969 * 179.78096 * 6 5 3 8 8 C 1.39316 * 120.09916 * 0.47181 * 7 6 5 9 9 N 1.38889 * 119.90708 * 179.75975 * 8 7 6 10 10 S 1.65597 * 120.00121 * 313.78726 * 9 8 7 11 11 O 1.42097 * 106.40322 * 52.06694 * 10 9 8 12 12 O 1.42101 * 106.40070 * 184.99126 * 10 9 8 13 13 C 1.76202 * 107.21301 * 298.52758 * 10 9 8 14 14 H 1.07997 * 120.00563 * 4.90545 * 13 10 9 15 15 C 1.37880 * 119.99460 * 184.89934 * 13 10 9 16 16 N 1.31516 * 120.00385 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 120.00015 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.46900 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47219 * 120.00119 * 17 15 13 20 20 H 1.48505 * 109.47120 * 240.00447 * 17 15 13 21 21 C 1.39316 * 120.18888 * 359.77903 * 8 7 6 22 22 C 1.36552 * 120.09715 * 359.97438 * 21 8 7 23 23 H 1.09001 * 109.46570 * 60.00182 * 1 2 3 24 24 H 1.08998 * 109.46686 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46885 * 300.00183 * 1 2 3 26 26 H 1.09001 * 109.46570 * 119.99818 * 2 1 3 27 27 H 1.08991 * 109.47138 * 239.99990 * 2 1 3 28 28 H 1.07995 * 120.05069 * 359.97438 * 6 5 3 29 29 H 1.08000 * 119.95488 * 180.20314 * 7 6 5 30 30 H 0.97004 * 119.99670 * 133.78905 * 9 8 7 31 31 H 0.96994 * 120.00171 * 179.97438 * 16 15 13 32 32 H 1.08001 * 119.95449 * 179.97438 * 21 8 7 33 33 H 1.07994 * 120.04782 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 6 3.4752 1.6891 0.0006 6 6 4.3874 0.6256 0.0068 7 6 5.7290 0.8796 0.0028 8 6 6.1912 2.1938 0.0024 9 7 7.5568 2.4476 0.0034 10 16 8.5513 1.6239 1.0400 11 8 8.2740 0.2432 0.8499 12 8 9.8474 2.1851 0.8834 13 6 8.0348 2.0142 2.6787 14 1 7.1556 2.6208 2.8378 15 6 8.7531 1.5448 3.7580 16 7 9.8239 0.8063 3.5644 17 14 8.2060 1.9591 5.4955 18 1 6.9817 2.7980 5.4421 19 1 7.9142 0.7048 6.2349 20 1 9.2868 2.7035 6.1905 21 6 5.2877 3.2542 0.0015 22 6 3.9443 3.0092 0.0004 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 4.0300 -0.3935 0.0117 29 1 6.4329 0.0605 0.0043 30 1 7.9278 3.1075 -0.6032 31 1 10.3294 0.4765 4.3237 32 1 5.6502 4.2716 0.0016 33 1 3.2446 3.8319 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = -111.818953 kcal Electronic energy + Delta-G solvation = -19764.326571 eV Core-core repulsion = 16495.178548 eV Total energy + Delta-G solvation = -3269.148023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99939 -38.45834 -35.48870 -34.56254 -34.21810 -33.20870 -32.95623 -30.87382 -29.26087 -26.26926 -25.03953 -22.75992 -22.08778 -19.54796 -19.25261 -17.91917 -17.34992 -16.63020 -16.40670 -15.45586 -15.38009 -15.09710 -14.39533 -14.14887 -13.97013 -13.65769 -13.36546 -13.27276 -12.74295 -12.32715 -12.29023 -12.14133 -11.82920 -11.42065 -11.30701 -11.25268 -11.18330 -10.79525 -10.65617 -10.54684 -10.35937 -9.91455 -9.59113 -9.36431 -9.00052 -8.87030 -7.99195 -6.82810 -5.46226 0.80104 1.66839 2.00201 2.57109 2.99663 3.08414 3.16414 3.95567 4.00680 4.08721 4.40411 4.54330 4.86448 5.01806 5.03223 5.14221 5.22331 5.46584 5.54529 5.58635 5.67982 5.71851 5.82399 5.82788 6.06563 6.15414 6.33462 6.37158 6.54166 6.58094 6.85256 7.08420 7.21097 7.61646 7.63205 7.84638 8.76653 10.11460 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.005110 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.269354 B = 5477.792473 C = 6064.445455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.173 4.173 3 C 0.401 3.599 4 O -0.468 6.468 5 C -0.210 4.210 6 C -0.045 4.045 7 C -0.166 4.166 8 C 0.219 3.781 9 N -1.074 6.074 10 S 2.701 3.299 11 O -0.996 6.996 12 O -0.991 6.991 13 C -1.013 5.013 14 H 0.105 0.895 15 C 0.134 3.866 16 N -0.843 5.843 17 Si 0.922 3.078 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.163 4.163 22 C -0.041 4.041 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.415 0.585 31 H 0.292 0.708 32 H 0.131 0.869 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 -0.145 -5.864 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.210 4.210 3 C 0.281 3.719 4 O -0.344 6.344 5 C -0.212 4.212 6 C -0.064 4.064 7 C -0.187 4.187 8 C 0.120 3.880 9 N -0.817 5.817 10 S 2.803 3.197 11 O -0.986 6.986 12 O -0.981 6.981 13 C -1.148 5.148 14 H 0.123 0.877 15 C -0.084 4.084 16 N -0.472 5.472 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.184 4.184 22 C -0.060 4.060 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.183 0.817 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.149 0.851 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.566 -0.466 -5.990 13.034 hybrid contribution -0.194 0.816 1.139 1.415 sum -11.760 0.350 -4.851 12.726 Atomic orbital electron populations 1.21583 0.93952 1.01545 1.02899 1.22006 0.98021 0.96200 1.04807 1.22351 0.87981 0.90955 0.70595 1.90490 1.58555 1.47838 1.37563 1.20382 0.94556 0.94513 1.11730 1.21030 0.92349 0.98466 0.94594 1.21780 0.97258 0.96961 1.02731 1.17759 0.83663 0.93274 0.93328 1.54058 1.15235 1.57959 1.54400 1.01064 0.71366 0.72689 0.74620 1.93320 1.84587 1.33387 1.87290 1.93402 1.37989 1.79127 1.87616 1.30397 1.23842 1.47275 1.13243 0.87670 1.24739 0.91922 0.90134 1.01637 1.69890 1.14222 1.28064 1.35048 0.86091 0.79696 0.79248 0.80384 1.18473 1.19425 1.19467 1.20928 0.92867 0.98957 1.05686 1.20908 0.95073 0.95995 0.94016 0.92303 0.92226 0.92221 0.88171 0.88319 0.84900 0.81704 0.75055 0.89724 0.85129 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.20 37.16 0.34 -0.97 16 2 C -0.17 -1.66 5.02 -27.88 -0.14 -1.80 16 3 C 0.40 5.29 7.10 -30.87 -0.22 5.07 16 4 O -0.47 -7.31 15.96 5.53 0.09 -7.22 16 5 C -0.21 -3.00 5.87 -105.05 -0.62 -3.61 16 6 C -0.05 -0.65 9.42 -39.49 -0.37 -1.02 16 7 C -0.17 -2.91 9.15 -39.79 -0.36 -3.27 16 8 C 0.22 3.89 6.12 -83.86 -0.51 3.38 16 9 N -1.07 -20.33 5.73 32.42 0.19 -20.15 16 10 S 2.70 67.64 4.94 -107.50 -0.53 67.11 16 11 O -1.00 -26.53 15.11 -57.17 -0.86 -27.39 16 12 O -0.99 -27.65 17.91 -57.17 -1.02 -28.68 16 13 C -1.01 -26.91 9.60 30.60 0.29 -26.61 16 14 H 0.11 2.62 7.81 -52.49 -0.41 2.21 16 15 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 16 N -0.84 -23.83 13.10 55.43 0.73 -23.11 16 17 Si 0.92 20.10 29.54 -169.99 -5.02 15.08 16 18 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.16 -2.49 9.91 -39.79 -0.39 -2.88 16 22 C -0.04 -0.60 9.54 -39.49 -0.38 -0.97 16 23 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.13 1.44 7.03 -52.49 -0.37 1.08 16 29 H 0.17 3.16 5.67 -52.49 -0.30 2.87 16 30 H 0.42 6.48 8.95 -34.47 -0.31 6.17 16 31 H 0.29 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -33.72 303.99 -7.76 -41.49 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.45 Total: 7.46 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -2.46 Total: -29.18 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.91 Total: -43.25 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.80 Total: -63.29 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 67.64 SS G_CDS: -0.53 Total: 67.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.72 -7.76 -41.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.331 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds