Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99914 * 2 1 4 4 H 1.48504 * 109.47036 * 270.00329 * 3 2 1 5 5 H 1.48497 * 109.46818 * 30.00011 * 3 2 1 6 6 H 1.48499 * 109.47237 * 149.99855 * 3 2 1 7 7 C 1.37878 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99700 * 359.97438 * 7 2 1 9 9 S 1.76192 * 120.00485 * 180.02562 * 7 2 1 10 10 O 1.42102 * 106.40178 * 66.45684 * 9 7 2 11 11 O 1.42101 * 106.40176 * 293.53972 * 9 7 2 12 12 N 1.65602 * 107.22181 * 179.97438 * 9 7 2 13 13 C 1.39577 * 119.99724 * 67.78835 * 12 9 7 14 14 C 1.37838 * 119.89715 * 327.07961 * 13 12 9 15 15 C 1.38726 * 120.35255 * 180.02562 * 14 13 12 16 16 C 1.37486 * 120.25996 * 359.97438 * 15 14 13 17 17 C 1.39949 * 120.47018 * 0.02562 * 16 15 14 18 18 S 1.75949 * 130.44878 * 180.02562 * 17 16 15 19 19 C 1.75300 * 92.18712 * 179.97438 * 18 17 16 20 20 C 1.31782 * 111.38287 * 359.97438 * 19 18 17 21 21 C 1.39597 * 119.89092 * 359.97438 * 17 16 15 22 22 H 0.97001 * 120.00603 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00012 * 247.79245 * 12 9 7 24 24 H 1.08003 * 119.83007 * 359.97438 * 14 13 12 25 25 H 1.08001 * 119.87284 * 180.26449 * 15 14 13 26 26 H 1.07995 * 119.76017 * 179.97438 * 16 15 14 27 27 H 1.08001 * 124.30344 * 180.02562 * 19 18 17 28 28 H 1.08006 * 122.55819 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 0.0001 10 8 4.1673 -0.6503 1.2504 11 8 4.1683 -0.6487 -1.2491 12 7 4.2568 -2.7758 0.0000 13 6 4.0274 -3.5773 -1.1194 14 6 2.9020 -3.3762 -1.8894 15 6 2.6644 -4.1678 -3.0036 16 6 3.5504 -5.1603 -3.3502 17 6 4.7003 -5.3841 -2.5844 18 16 5.9924 -6.5618 -2.7828 19 6 6.8365 -5.9748 -1.3630 20 6 6.1888 -4.9759 -0.7977 21 6 4.9522 -4.5953 -1.4606 22 1 -0.4851 0.8400 -0.0004 23 1 4.7034 -3.1452 0.7778 24 1 2.2010 -2.5989 -1.6235 25 1 1.7823 -4.0006 -3.6040 26 1 3.3572 -5.7720 -4.2190 27 1 7.7690 -6.3796 -0.9984 28 1 6.5489 -4.4784 0.0907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982505.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -32.148186 kcal Electronic energy + Delta-G solvation = -17686.937461 eV Core-core repulsion = 14728.163997 eV Total energy + Delta-G solvation = -2958.773463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.52711 -35.91040 -35.16668 -34.65760 -34.50345 -33.20094 -29.46397 -28.35425 -26.62566 -23.69317 -22.30416 -20.54460 -19.16693 -18.42343 -17.71395 -16.89833 -16.06200 -15.65070 -15.11393 -14.94977 -14.40888 -13.91552 -13.79143 -13.49574 -13.45912 -13.01388 -12.34806 -12.01923 -11.71490 -11.49774 -11.32483 -11.21534 -10.93934 -10.81880 -10.76516 -10.63005 -10.40094 -9.93797 -9.31403 -9.20249 -8.80430 -8.29875 -7.26820 -6.93503 -5.51082 0.92627 1.49114 1.63138 1.78078 2.08615 2.45028 2.99406 3.09868 3.18057 3.84863 3.94711 4.02422 4.45303 4.71393 5.04140 5.11057 5.22809 5.40963 5.48144 5.64138 5.81376 5.94352 6.09374 6.11611 6.33256 6.45572 6.65304 6.82039 7.09975 7.33163 7.51127 8.02905 8.54242 10.17196 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.032772 B = 0.005874 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.195210 B = 4765.247689 C = 5294.366381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.156 3.844 3 Si 0.800 3.200 4 H -0.243 1.243 5 H -0.253 1.253 6 H -0.222 1.222 7 C -1.019 5.019 8 H 0.131 0.869 9 S 2.662 3.338 10 O -0.998 6.998 11 O -0.992 6.992 12 N -1.056 6.056 13 C 0.233 3.767 14 C -0.175 4.175 15 C -0.058 4.058 16 C -0.123 4.123 17 C -0.110 4.110 18 S 0.061 5.939 19 C -0.204 4.204 20 C -0.102 4.102 21 C -0.114 4.114 22 H 0.284 0.716 23 H 0.416 0.584 24 H 0.172 0.828 25 H 0.136 0.864 26 H 0.125 0.875 27 H 0.164 0.836 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -10.724 -4.009 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.065 4.065 3 Si 0.620 3.380 4 H -0.167 1.167 5 H -0.177 1.177 6 H -0.144 1.144 7 C -1.153 5.153 8 H 0.149 0.851 9 S 2.765 3.235 10 O -0.988 6.988 11 O -0.982 6.982 12 N -0.797 5.797 13 C 0.132 3.868 14 C -0.199 4.199 15 C -0.079 4.079 16 C -0.147 4.147 17 C -0.225 4.225 18 S 0.323 5.677 19 C -0.338 4.338 20 C -0.132 4.132 21 C -0.125 4.125 22 H 0.094 0.906 23 H 0.250 0.750 24 H 0.189 0.811 25 H 0.154 0.846 26 H 0.143 0.857 27 H 0.182 0.818 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.357 -10.932 -5.056 14.660 hybrid contribution -0.413 1.367 1.483 2.059 sum 7.944 -9.565 -3.573 12.937 Atomic orbital electron populations 1.69963 1.06491 1.29367 1.38317 1.24383 0.94808 0.98719 0.88552 0.87875 0.83537 0.84530 0.82083 1.16706 1.17655 1.14372 1.30409 1.14769 1.02617 1.67530 0.85082 1.02022 0.77958 0.69942 0.73629 1.93500 1.85653 1.74766 1.44903 1.93465 1.84987 1.74784 1.44973 1.53750 1.73085 1.31399 1.21509 1.17197 0.91755 0.90273 0.87540 1.21890 0.96804 1.03812 0.97350 1.20885 0.98427 0.93220 0.95400 1.20346 0.93494 1.00596 1.00303 1.22424 1.00036 1.00561 0.99520 1.83892 1.16638 1.37581 1.29588 1.24832 1.05050 1.02923 1.00956 1.20857 0.93813 0.97521 1.01024 1.19035 0.96016 1.00196 0.97223 0.90591 0.75029 0.81114 0.84586 0.85750 0.81805 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.19 13.96 55.43 0.77 -21.41 15 2 C 0.16 4.26 5.47 -17.82 -0.10 4.16 15 3 Si 0.80 19.75 26.54 -169.99 -4.51 15.24 15 4 H -0.24 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.25 -5.73 7.11 56.52 0.40 -5.32 15 6 H -0.22 -5.61 5.61 56.52 0.32 -5.29 15 7 C -1.02 -26.74 8.11 30.60 0.25 -26.49 15 8 H 0.13 3.41 7.14 -52.48 -0.37 3.04 15 9 S 2.66 64.70 3.84 -107.50 -0.41 64.29 15 10 O -1.00 -25.90 16.02 -57.17 -0.92 -26.81 15 11 O -0.99 -25.97 16.23 -57.17 -0.93 -26.90 15 12 N -1.06 -20.59 5.72 32.74 0.19 -20.40 15 13 C 0.23 4.45 6.25 -83.16 -0.52 3.93 15 14 C -0.18 -3.38 8.89 -39.55 -0.35 -3.73 15 15 C -0.06 -0.92 10.02 -39.68 -0.40 -1.31 15 16 C -0.12 -1.79 10.06 -39.21 -0.39 -2.19 15 17 C -0.11 -1.70 6.48 -38.43 -0.25 -1.95 15 18 S 0.06 0.77 23.24 -107.50 -2.50 -1.73 15 19 C -0.20 -2.45 11.02 28.84 0.32 -2.14 15 20 C -0.10 -1.43 10.10 -38.63 -0.39 -1.82 15 21 C -0.11 -1.93 6.04 -105.23 -0.64 -2.56 15 22 H 0.28 7.03 8.31 -40.82 -0.34 6.69 15 23 H 0.42 6.71 8.70 -34.47 -0.30 6.41 15 24 H 0.17 3.64 4.40 -52.48 -0.23 3.41 15 25 H 0.14 1.76 8.06 -52.49 -0.42 1.34 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.16 1.44 8.06 -52.49 -0.42 1.02 15 28 H 0.14 1.70 7.98 -52.48 -0.42 1.28 15 LS Contribution 268.51 15.07 4.05 4.05 Total: -1.00 -31.16 268.51 -8.54 -39.70 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -1.81 Total: 8.09 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -2.47 Total: -34.10 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.96 Total: -41.81 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -1.84 Total: -53.72 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.51 Total: 15.24 kcal Atomic # 16 Polarization: 65.47 SS G_CDS: -2.91 Total: 62.56 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.16 -8.54 -39.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982505.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.550 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds