Wall clock time and date at job start Tue Mar 31 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21255 * 120.00291 * 2 1 4 4 C 1.47188 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.39890 * 120.13968 * 5.88811 * 4 2 1 6 6 C 1.37908 * 119.97956 * 179.97438 * 5 4 2 7 7 C 1.38285 * 120.25744 * 359.74419 * 6 5 4 8 8 C 1.39020 * 120.27491 * 0.51324 * 7 6 5 9 9 N 1.39715 * 119.99332 * 179.76405 * 8 7 6 10 10 S 1.65600 * 119.99735 * 326.32001 * 9 8 7 11 11 O 1.42098 * 106.40089 * 315.34060 * 10 9 8 12 12 O 1.42100 * 106.40297 * 182.42332 * 10 9 8 13 13 C 1.76194 * 107.21969 * 68.88152 * 10 9 8 14 14 H 1.08002 * 120.00222 * 0.02562 * 13 10 9 15 15 C 1.37884 * 120.00054 * 179.72332 * 13 10 9 16 16 N 1.31514 * 119.99862 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99942 * 0.02562 * 15 13 10 18 18 H 1.48504 * 109.46856 * 89.99961 * 17 15 13 19 19 H 1.48494 * 109.47007 * 209.99824 * 17 15 13 20 20 H 1.48505 * 109.47123 * 330.00130 * 17 15 13 21 21 C 1.38618 * 120.01959 * 359.48451 * 8 7 6 22 22 C 1.50696 * 120.12750 * 180.23334 * 21 8 7 23 23 H 1.08995 * 109.47108 * 270.00110 * 1 2 3 24 24 H 1.08993 * 109.47247 * 30.00396 * 1 2 3 25 25 H 1.08998 * 109.47279 * 150.00202 * 1 2 3 26 26 H 1.08002 * 120.00489 * 359.97438 * 5 4 2 27 27 H 1.08008 * 119.86981 * 179.97438 * 6 5 4 28 28 H 1.08003 * 119.86373 * 180.25093 * 7 6 5 29 29 H 0.96999 * 120.00434 * 146.31967 * 9 8 7 30 30 H 0.97001 * 120.00099 * 180.02562 * 16 15 13 31 31 H 1.08997 * 109.47130 * 95.30124 * 22 21 8 32 32 H 1.09004 * 109.47038 * 215.30019 * 22 21 8 33 33 H 1.09001 * 109.47508 * 335.29772 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5519 -2.4847 -0.1230 6 6 2.2448 -3.6771 -0.1226 7 6 3.6227 -3.6823 -0.0057 8 6 4.3196 -2.4863 0.1231 9 7 5.7113 -2.4986 0.2457 10 16 6.4613 -3.7418 1.0423 11 8 5.7130 -3.9672 2.2291 12 8 7.8493 -3.4375 1.0447 13 6 6.2704 -5.1864 0.0518 14 1 5.7374 -5.1317 -0.8860 15 6 6.8068 -6.3855 0.4708 16 7 6.6647 -7.4637 -0.2688 17 14 7.7354 -6.4785 2.0890 18 1 6.7880 -6.8038 3.1853 19 1 8.7748 -7.5356 2.0031 20 1 8.3814 -5.1702 2.3649 21 6 3.6347 -1.2811 0.1239 22 6 4.3883 0.0170 0.2581 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 0.4761 -2.4850 -0.2187 27 1 1.7095 -4.6104 -0.2177 28 1 4.1593 -4.6195 -0.0102 29 1 6.2383 -1.7791 -0.1357 30 1 7.0418 -8.3073 0.0262 31 1 4.5790 0.4304 -0.7322 32 1 3.7946 0.7234 0.8385 33 1 5.3361 -0.1637 0.7652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:16 Heat of formation + Delta-G solvation = -112.199707 kcal Electronic energy + Delta-G solvation = -20297.515110 eV Core-core repulsion = 17028.350576 eV Total energy + Delta-G solvation = -3269.164534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34290 -39.52792 -37.83784 -36.67475 -36.13682 -35.26910 -33.48030 -32.08698 -29.49189 -28.61069 -27.82696 -24.75425 -22.44608 -21.64828 -20.51445 -19.67776 -18.85179 -18.51763 -17.43186 -16.73369 -16.70081 -16.41218 -16.09465 -15.86193 -15.55047 -15.13516 -15.00674 -14.57532 -14.32702 -13.90074 -13.49274 -13.37786 -13.18999 -13.09326 -12.99759 -12.86777 -12.80800 -12.74063 -12.54218 -12.28955 -11.94813 -11.81230 -11.35624 -11.13370 -10.42684 -9.83897 -9.18007 -9.00806 -7.58705 -0.31661 -0.12504 0.39702 1.03101 1.11835 1.18842 1.46650 1.85870 2.26750 2.38203 2.75995 3.15124 3.17700 3.79626 3.87478 3.98070 4.06645 4.16408 4.22999 4.50166 4.65049 4.70872 4.76220 4.78560 4.83481 5.04652 5.17755 5.23225 5.28536 5.32806 5.44817 5.56520 5.85399 5.95782 6.12040 6.46403 6.61417 8.15214 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.031632 B = 0.005529 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.960631 B = 5063.087352 C = 5588.188667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.397 3.603 3 O -0.489 6.489 4 C -0.170 4.170 5 C -0.075 4.075 6 C -0.108 4.108 7 C -0.160 4.160 8 C 0.140 3.860 9 N -1.049 6.049 10 S 2.685 3.315 11 O -1.015 7.015 12 O -1.021 7.021 13 C -1.031 5.031 14 H 0.120 0.880 15 C 0.118 3.882 16 N -0.840 5.840 17 Si 0.817 3.183 18 H -0.237 1.237 19 H -0.217 1.217 20 H -0.235 1.235 21 C -0.074 4.074 22 C -0.119 4.119 23 H 0.115 0.885 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.184 0.816 27 H 0.160 0.840 28 H 0.137 0.863 29 H 0.427 0.573 30 H 0.294 0.706 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 9.566 -0.910 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.278 3.722 3 O -0.368 6.368 4 C -0.171 4.171 5 C -0.093 4.093 6 C -0.126 4.126 7 C -0.182 4.182 8 C 0.044 3.956 9 N -0.797 5.797 10 S 2.786 3.214 11 O -1.004 7.004 12 O -1.011 7.011 13 C -1.164 5.164 14 H 0.138 0.862 15 C -0.101 4.101 16 N -0.469 5.469 17 Si 0.634 3.366 18 H -0.160 1.160 19 H -0.139 1.139 20 H -0.157 1.157 21 C -0.078 4.078 22 C -0.176 4.176 23 H 0.133 0.867 24 H 0.113 0.887 25 H 0.132 0.868 26 H 0.201 0.799 27 H 0.177 0.823 28 H 0.155 0.845 29 H 0.264 0.736 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.602 9.860 -0.045 16.001 hybrid contribution 1.097 -0.684 -0.274 1.321 sum -11.505 9.176 -0.320 14.720 Atomic orbital electron populations 1.22266 0.89690 1.06522 1.06324 1.22996 0.93528 0.86153 0.69512 1.90469 1.72653 1.35399 1.38308 1.20546 0.92471 0.96859 1.07256 1.21842 1.01942 0.89546 0.96016 1.21285 0.91907 1.00400 0.99008 1.22241 0.97855 0.97999 1.00065 1.17403 0.82104 0.94618 1.01504 1.53134 1.12576 1.41416 1.72552 1.01080 0.71830 0.74495 0.73962 1.93415 1.72893 1.85963 1.48160 1.93461 1.33836 1.85785 1.88035 1.30758 1.49879 1.12315 1.23458 0.86231 1.25004 0.92188 0.94468 0.98418 1.69976 1.38553 1.01027 1.37387 0.87601 0.82703 0.84376 0.81884 1.15983 1.13916 1.15731 1.20223 0.94066 0.94235 0.99285 1.21016 0.99506 0.93712 1.03328 0.86700 0.88748 0.86811 0.79918 0.82275 0.84537 0.73554 0.89537 0.90027 0.88936 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 9.87 71.23 0.70 -1.40 16 2 C 0.40 8.68 7.16 28.04 0.20 8.88 16 3 O -0.49 -13.73 14.06 -2.95 -0.04 -13.77 16 4 C -0.17 -4.42 5.87 -20.17 -0.12 -4.54 16 5 C -0.07 -1.60 9.40 22.59 0.21 -1.38 16 6 C -0.11 -2.96 10.02 22.20 0.22 -2.74 16 7 C -0.16 -6.06 8.94 22.47 0.20 -5.86 16 8 C 0.14 5.33 6.15 38.16 0.23 5.57 16 9 N -1.05 -42.38 5.22 -51.46 -0.27 -42.65 16 10 S 2.68 134.39 3.85 -56.49 -0.22 134.17 16 11 O -1.01 -54.08 16.23 -128.00 -2.08 -56.16 16 12 O -1.02 -54.59 15.99 -128.00 -2.05 -56.63 16 13 C -1.03 -55.85 8.15 67.74 0.55 -55.30 16 14 H 0.12 6.54 7.20 -2.91 -0.02 6.52 16 15 C 0.12 6.51 5.47 84.66 0.46 6.97 16 16 N -0.84 -46.37 13.96 21.45 0.30 -46.07 16 17 Si 0.82 39.89 26.55 68.60 1.82 41.71 16 18 H -0.24 -11.18 7.11 99.48 0.71 -10.48 16 19 H -0.22 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.23 -11.97 5.59 99.48 0.56 -11.41 16 21 C -0.07 -2.40 5.94 -19.41 -0.12 -2.51 16 22 C -0.12 -3.55 8.35 71.23 0.60 -2.96 16 23 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 0.66 6.27 -2.39 -0.01 0.64 16 26 H 0.18 1.91 6.24 -2.91 -0.02 1.90 16 27 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.14 5.97 4.55 -2.91 -0.01 5.96 16 29 H 0.43 14.70 7.80 -96.75 -0.75 13.95 16 30 H 0.29 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.09 2.75 5.76 -2.38 -0.01 2.73 16 33 H 0.06 1.68 6.88 -2.39 -0.02 1.67 16 Total: -1.00 -71.41 286.47 0.89 -70.53 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.27 Total: 24.13 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 3.15 Total: -55.26 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: 0.03 Total: -88.71 kcal Atomic # 8 Polarization: -122.40 SS G_CDS: -4.17 Total: -126.56 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.82 Total: 41.71 kcal Atomic # 16 Polarization: 134.39 SS G_CDS: -0.22 Total: 134.17 kcal Total: -71.41 0.89 -70.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.674 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds