Wall clock time and date at job start Tue Mar 31 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47115 * 2 1 4 4 O 1.21261 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.47192 * 120.00153 * 180.02562 * 3 2 1 6 6 C 1.39883 * 120.13369 * 359.72834 * 5 3 2 7 7 C 1.37919 * 119.97581 * 179.76412 * 6 5 3 8 8 C 1.38290 * 120.25252 * 0.50797 * 7 6 5 9 9 C 1.39025 * 120.27945 * 359.74597 * 8 7 6 10 10 N 1.39708 * 119.99253 * 180.02562 * 9 8 7 11 11 S 1.65596 * 120.00285 * 255.19951 * 10 9 8 12 12 O 1.42104 * 106.40459 * 177.79679 * 11 10 9 13 13 O 1.42096 * 106.40500 * 310.71618 * 11 10 9 14 14 C 1.76199 * 107.21726 * 64.26126 * 11 10 9 15 15 H 1.07992 * 120.00179 * 5.16873 * 14 11 10 16 16 C 1.37882 * 119.99895 * 185.17670 * 14 11 10 17 17 N 1.31519 * 120.00035 * 180.02562 * 16 14 11 18 18 Si 1.86794 * 120.00021 * 359.97438 * 16 14 11 19 19 H 1.48498 * 109.47404 * 90.00251 * 18 16 14 20 20 H 1.48500 * 109.47304 * 210.00441 * 18 16 14 21 21 H 1.48505 * 109.47286 * 329.99863 * 18 16 14 22 22 C 1.38614 * 120.01595 * 0.02562 * 9 8 7 23 23 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47083 * 299.99874 * 1 2 3 25 25 H 1.09000 * 109.47674 * 59.99564 * 1 2 3 26 26 H 1.09000 * 109.47674 * 120.00436 * 2 1 3 27 27 H 1.08998 * 109.47030 * 240.00285 * 2 1 3 28 28 H 1.08003 * 120.01317 * 0.02562 * 6 5 3 29 29 H 1.07999 * 119.86833 * 180.25403 * 7 6 5 30 30 H 1.08000 * 119.86255 * 179.75856 * 8 7 6 31 31 H 0.97003 * 119.99745 * 75.19729 * 10 9 8 32 32 H 0.96997 * 120.00230 * 180.02562 * 17 16 14 33 33 H 1.07998 * 120.12662 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3909 0.6287 0.0046 7 6 5.7462 0.8845 -0.0008 8 6 6.2093 2.1875 -0.0009 9 6 5.3128 3.2501 -0.0007 10 7 5.7872 4.5641 -0.0013 11 16 5.7245 5.4677 1.3850 12 8 6.3209 6.7198 1.0752 13 8 4.4015 5.3403 1.8876 14 6 6.7810 4.6911 2.5620 15 1 7.3795 3.8403 2.2718 16 6 6.8435 5.1696 3.8536 17 7 7.6325 4.5903 4.7320 18 14 5.8088 6.6416 4.3555 19 1 4.4919 6.1731 4.8571 20 1 6.5072 7.3952 5.4276 21 1 5.6046 7.5268 3.1807 22 6 3.9483 3.0061 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 4.0335 -0.3905 0.0086 29 1 6.4483 0.0639 -0.0010 30 1 7.2719 2.3806 -0.0012 31 1 6.1534 4.9472 -0.8138 32 1 7.6762 4.9266 5.6408 33 1 3.2502 3.8302 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:00 Heat of formation + Delta-G solvation = -96.445253 kcal Electronic energy + Delta-G solvation = -19972.852149 eV Core-core repulsion = 16704.370779 eV Total energy + Delta-G solvation = -3268.481370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99098 -38.36422 -35.70941 -34.59191 -34.51310 -33.07908 -32.88613 -31.03222 -28.88314 -26.46826 -25.47095 -22.73801 -22.03835 -19.71761 -19.17321 -17.75166 -17.33901 -16.75710 -16.02565 -15.72030 -15.46788 -15.30591 -14.88728 -14.42308 -13.90506 -13.54044 -13.41971 -13.30211 -12.88701 -12.42853 -12.35414 -12.01119 -11.77036 -11.64511 -11.42454 -11.26723 -11.23089 -10.92391 -10.69608 -10.56121 -10.02204 -9.81686 -9.48683 -9.25865 -9.00231 -8.81181 -8.43783 -6.84700 -5.39575 0.79708 1.40943 1.98525 2.53634 3.05744 3.15848 3.23638 3.90494 3.91832 3.95306 4.22209 4.55245 4.81828 4.98174 5.00687 5.07487 5.14396 5.24621 5.39206 5.46953 5.64605 5.66090 5.73592 5.81462 6.00458 6.08201 6.14705 6.30422 6.44026 6.49726 6.69773 6.99069 7.43455 7.61278 7.63918 8.14927 8.65367 10.27374 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.005541 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.095874 B = 5051.595743 C = 5293.370321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.169 4.169 3 C 0.395 3.605 4 O -0.450 6.450 5 C -0.171 4.171 6 C -0.077 4.077 7 C -0.128 4.128 8 C -0.079 4.079 9 C 0.145 3.855 10 N -1.074 6.074 11 S 2.666 3.334 12 O -1.001 7.001 13 O -1.000 7.000 14 C -1.011 5.011 15 H 0.123 0.877 16 C 0.154 3.846 17 N -0.820 5.820 18 Si 0.814 3.186 19 H -0.244 1.244 20 H -0.257 1.257 21 H -0.232 1.232 22 C -0.050 4.050 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.414 0.586 32 H 0.281 0.719 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -11.359 -9.872 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.272 3.728 4 O -0.325 6.325 5 C -0.173 4.173 6 C -0.096 4.096 7 C -0.147 4.147 8 C -0.100 4.100 9 C 0.050 3.950 10 N -0.825 5.825 11 S 2.769 3.231 12 O -0.992 6.992 13 O -0.990 6.990 14 C -1.146 5.146 15 H 0.141 0.859 16 C -0.066 4.066 17 N -0.449 5.449 18 Si 0.635 3.365 19 H -0.168 1.168 20 H -0.181 1.181 21 H -0.155 1.155 22 C -0.070 4.070 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.250 0.750 32 H 0.092 0.908 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.734 -10.122 -9.447 15.396 hybrid contribution 0.561 0.208 0.378 0.708 sum -6.173 -9.915 -9.069 14.786 Atomic orbital electron populations 1.21599 0.93806 1.01577 1.03185 1.21976 0.98190 0.95847 1.04592 1.22504 0.87843 0.91144 0.71267 1.90534 1.58273 1.47798 1.35866 1.20333 0.94911 0.93867 1.08161 1.21378 0.93014 0.98263 0.96953 1.20982 0.95428 0.96466 1.01786 1.21788 1.00542 0.92223 0.95456 1.17137 0.91278 0.84479 1.02122 1.53355 1.78494 1.21558 1.29102 1.01802 0.75202 0.73037 0.73026 1.93482 1.79011 1.42142 1.84517 1.93421 1.40320 1.86789 1.78461 1.30323 1.43123 1.31286 1.09882 0.85898 1.24410 0.92201 0.95141 0.94861 1.69976 1.32330 1.37968 1.04657 0.87672 0.82215 0.83177 0.83476 1.16763 1.18081 1.15487 1.21842 0.95222 0.96864 0.93120 0.92183 0.92015 0.92184 0.88225 0.88394 0.85129 0.85072 0.84733 0.75006 0.90807 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.20 37.16 0.34 -1.01 16 2 C -0.17 -1.57 5.03 -27.89 -0.14 -1.71 16 3 C 0.39 5.58 7.12 -30.68 -0.22 5.36 16 4 O -0.45 -7.97 15.97 5.57 0.09 -7.88 16 5 C -0.17 -2.57 5.87 -105.09 -0.62 -3.18 16 6 C -0.08 -0.92 9.47 -39.08 -0.37 -1.29 16 7 C -0.13 -1.59 10.02 -39.68 -0.40 -1.98 16 8 C -0.08 -1.21 9.96 -39.27 -0.39 -1.60 16 9 C 0.14 2.62 5.79 -83.84 -0.49 2.13 16 10 N -1.07 -20.72 5.69 32.38 0.18 -20.53 16 11 S 2.67 67.01 4.18 -107.50 -0.45 66.56 16 12 O -1.00 -26.86 16.58 -57.17 -0.95 -27.81 16 13 O -1.00 -27.07 15.41 -57.17 -0.88 -27.95 16 14 C -1.01 -28.04 10.21 30.60 0.31 -27.72 16 15 H 0.12 3.38 8.06 -52.49 -0.42 2.96 16 16 C 0.15 4.41 5.47 -17.82 -0.10 4.31 16 17 N -0.82 -23.49 13.96 55.43 0.77 -22.72 16 18 Si 0.81 21.10 26.32 -169.99 -4.47 16.62 16 19 H -0.24 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.23 -6.13 5.89 56.52 0.33 -5.80 16 22 C -0.05 -0.90 8.83 -38.88 -0.34 -1.24 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.66 8.10 -51.92 -0.42 0.24 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.13 1.03 7.04 -52.48 -0.37 0.66 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.41 6.53 8.95 -34.47 -0.31 6.22 16 32 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.14 2.80 7.53 -52.49 -0.40 2.40 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -34.70 301.72 -7.21 -41.92 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.65 Total: 5.18 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -2.41 Total: -27.94 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.96 Total: -43.25 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -1.74 Total: -63.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.47 Total: 16.62 kcal Atomic # 16 Polarization: 67.01 SS G_CDS: -0.45 Total: 66.56 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.70 -7.21 -41.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.530 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds