Wall clock time and date at job start Tue Mar 31 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46796 * 2 1 4 4 O 1.21308 * 120.00371 * 359.97438 * 3 2 1 5 5 C 1.46655 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.40064 * 120.24045 * 359.97438 * 5 3 2 7 7 C 1.37624 * 119.90006 * 180.02562 * 6 5 3 8 8 C 1.38699 * 120.39275 * 359.97438 * 7 6 5 9 9 C 1.37939 * 120.49627 * 0.02562 * 8 7 6 10 10 C 1.38959 * 120.08422 * 359.97438 * 9 8 7 11 11 N 1.38692 * 120.19696 * 179.97438 * 10 9 8 12 12 S 1.65606 * 119.99883 * 324.57558 * 11 10 9 13 13 O 1.42103 * 106.40003 * 181.41427 * 12 11 10 14 14 O 1.42098 * 106.40371 * 314.33574 * 12 11 10 15 15 C 1.76195 * 107.21641 * 67.87586 * 12 11 10 16 16 H 1.08003 * 120.00056 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00080 * 179.97438 * 15 12 11 18 18 N 1.31520 * 119.99655 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00217 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47054 * 120.00540 * 19 17 15 22 22 H 1.48503 * 109.47057 * 240.00491 * 19 17 15 23 23 H 1.08998 * 109.47389 * 300.00677 * 1 2 3 24 24 H 1.09008 * 109.47035 * 59.99999 * 1 2 3 25 25 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46968 * 239.99955 * 2 1 3 27 27 H 1.08995 * 109.46923 * 119.99936 * 2 1 3 28 28 H 1.07997 * 120.04961 * 0.02562 * 6 5 3 29 29 H 1.07998 * 119.80438 * 180.02562 * 7 6 5 30 30 H 1.07999 * 119.75549 * 180.02562 * 8 7 6 31 31 H 1.07991 * 119.95713 * 179.72468 * 9 8 7 32 32 H 0.97001 * 120.00398 * 144.57879 * 11 10 9 33 33 H 0.96998 * 119.99732 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2440 2.3429 -0.0005 5 6 3.4741 1.6888 -0.0006 6 6 4.3887 0.6280 -0.0006 7 6 5.7403 0.8876 -0.0006 8 6 6.2038 2.1948 -0.0011 9 6 5.3175 3.2518 -0.0011 10 6 3.9486 3.0130 -0.0011 11 7 3.0554 4.0740 -0.0006 12 16 3.4163 5.4597 0.8313 13 8 2.3039 6.3283 0.6656 14 8 3.8997 5.0499 2.1031 15 6 4.7722 6.2250 0.0066 16 1 5.1972 5.7662 -0.8740 17 6 5.2901 7.4100 0.4847 18 7 4.7722 7.9688 1.5567 19 14 6.7272 8.2217 -0.3901 20 1 7.1223 7.3989 -1.5615 21 1 6.3262 9.5757 -0.8494 22 1 7.8752 8.3360 0.5449 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0339 -0.3920 -0.0006 29 1 6.4442 0.0685 -0.0010 30 1 7.2666 2.3867 -0.0015 31 1 5.6880 4.2662 0.0030 32 1 2.2193 4.0044 -0.4874 33 1 5.1368 8.8023 1.8933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:04 Heat of formation + Delta-G solvation = -106.085569 kcal Electronic energy + Delta-G solvation = -20378.724019 eV Core-core repulsion = 17109.824613 eV Total energy + Delta-G solvation = -3268.899405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08262 -38.03411 -35.36322 -34.60991 -34.08751 -33.22772 -32.83970 -30.98112 -28.72737 -26.35735 -25.21459 -23.03010 -21.73450 -19.74352 -18.82039 -17.95977 -17.06468 -16.52667 -16.32037 -15.43990 -15.27599 -14.98382 -14.41205 -14.27624 -13.94645 -13.65306 -13.30525 -13.22650 -12.40800 -12.29747 -12.11392 -11.97679 -11.69543 -11.59218 -11.30302 -11.19977 -10.93764 -10.71410 -10.64604 -10.44197 -10.31350 -10.29472 -9.36367 -9.29577 -8.89570 -8.73834 -7.80717 -6.80707 -5.45382 0.93488 1.68014 2.13121 2.65204 3.00259 3.09020 3.15475 3.96643 4.05284 4.14787 4.50005 4.55037 4.90372 5.03001 5.07298 5.19124 5.27569 5.43391 5.56713 5.69887 5.71760 5.78171 5.88445 5.89059 6.08948 6.16704 6.35141 6.43333 6.53748 6.74049 6.88733 7.14177 7.24841 7.66811 7.81394 7.91302 8.75762 10.13538 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.006307 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.590344 B = 4438.351934 C = 5308.140198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.167 4.167 3 C 0.397 3.603 4 O -0.458 6.458 5 C -0.227 4.227 6 C -0.051 4.051 7 C -0.173 4.173 8 C -0.052 4.052 9 C -0.189 4.189 10 C 0.263 3.737 11 N -1.056 6.056 12 S 2.698 3.302 13 O -0.993 6.993 14 O -0.990 6.990 15 C -1.023 5.023 16 H 0.111 0.889 17 C 0.134 3.866 18 N -0.839 5.839 19 Si 0.923 3.077 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.269 1.269 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.167 0.833 32 H 0.423 0.577 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -15.349 -5.102 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.276 3.724 4 O -0.334 6.334 5 C -0.233 4.233 6 C -0.070 4.070 7 C -0.192 4.192 8 C -0.071 4.071 9 C -0.210 4.210 10 C 0.160 3.840 11 N -0.800 5.800 12 S 2.798 3.202 13 O -0.983 6.983 14 O -0.980 6.980 15 C -1.156 5.156 16 H 0.129 0.871 17 C -0.086 4.086 18 N -0.468 5.468 19 Si 0.747 3.253 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.194 1.194 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.184 0.816 32 H 0.263 0.737 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.495 -14.328 -4.083 14.907 hybrid contribution 0.895 0.406 -1.016 1.414 sum 1.389 -13.922 -5.099 14.891 Atomic orbital electron populations 1.21596 0.93836 1.01445 1.03272 1.21947 0.98148 0.95947 1.04356 1.22277 0.87748 0.91088 0.71261 1.90419 1.58380 1.47422 1.37207 1.20283 0.95036 0.93037 1.14913 1.21137 0.92842 0.97551 0.95492 1.20946 0.95294 0.96814 1.06133 1.21186 0.99735 0.92012 0.94186 1.22088 0.91304 1.03330 1.04246 1.17623 0.89474 0.86826 0.90035 1.54378 1.28951 1.30580 1.66079 1.01199 0.75264 0.70279 0.73410 1.93397 1.55605 1.62633 1.86714 1.93403 1.82241 1.81840 1.40512 1.30599 1.37516 1.19955 1.27566 0.87083 1.24774 0.96512 0.94430 0.92834 1.69904 1.38886 1.18540 1.19475 0.86079 0.80021 0.79278 0.79955 1.18375 1.19491 1.19437 0.92017 0.92112 0.92310 0.88533 0.88485 0.85422 0.85831 0.85314 0.81559 0.73686 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.20 37.16 0.34 -1.16 16 2 C -0.17 -1.72 5.03 -27.88 -0.14 -1.86 16 3 C 0.40 6.16 7.10 -30.91 -0.22 5.94 16 4 O -0.46 -8.66 13.55 5.53 0.07 -8.59 16 5 C -0.23 -3.72 5.89 -104.90 -0.62 -4.34 16 6 C -0.05 -0.65 9.46 -39.12 -0.37 -1.02 16 7 C -0.17 -2.13 10.02 -39.63 -0.40 -2.53 16 8 C -0.05 -0.77 10.02 -39.52 -0.40 -1.16 16 9 C -0.19 -3.59 9.02 -39.42 -0.36 -3.94 16 10 C 0.26 5.26 6.16 -83.58 -0.51 4.75 16 11 N -1.06 -23.76 5.06 32.57 0.16 -23.59 16 12 S 2.70 74.06 4.65 -107.50 -0.50 73.56 16 13 O -0.99 -30.19 18.02 -57.17 -1.03 -31.22 16 14 O -0.99 -29.53 17.49 -57.17 -1.00 -30.53 16 15 C -1.02 -27.37 7.64 30.60 0.23 -27.13 16 16 H 0.11 2.66 6.76 -52.48 -0.35 2.31 16 17 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 18 N -0.84 -24.24 13.19 55.43 0.73 -23.51 16 19 Si 0.92 19.82 29.54 -169.99 -5.02 14.79 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 24 H 0.06 0.67 8.10 -51.92 -0.42 0.25 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.13 1.09 7.05 -52.49 -0.37 0.72 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.17 3.45 4.40 -52.49 -0.23 3.22 16 32 H 0.42 9.01 6.58 -34.47 -0.23 8.78 16 33 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -35.58 297.53 -7.90 -43.48 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.27 Total: 10.05 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -2.53 Total: -28.94 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.90 Total: -47.10 kcal Atomic # 8 Polarization: -68.38 SS G_CDS: -1.96 Total: -70.33 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 74.06 SS G_CDS: -0.50 Total: 73.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.58 -7.90 -43.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.606 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds