Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21316 * 119.99477 * 2 1 4 4 C 1.46654 * 120.00200 * 179.97438 * 2 1 3 5 5 C 1.40052 * 120.23913 * 0.02562 * 4 2 1 6 6 C 1.37631 * 119.89789 * 179.97438 * 5 4 2 7 7 C 1.50696 * 119.80214 * 179.97438 * 6 5 4 8 8 C 1.38701 * 120.39416 * 0.02562 * 6 5 4 9 9 C 1.37937 * 120.48929 * 359.67236 * 8 6 5 10 10 C 1.38959 * 120.09082 * 0.60505 * 9 8 6 11 11 N 1.38693 * 120.20119 * 179.69395 * 10 9 8 12 12 S 1.65603 * 119.99819 * 324.41418 * 11 10 9 13 13 O 1.42091 * 106.40262 * 314.55667 * 12 11 10 14 14 O 1.42107 * 106.40137 * 181.63412 * 12 11 10 15 15 C 1.76200 * 107.21762 * 68.09943 * 12 11 10 16 16 H 1.08003 * 120.00320 * 359.97438 * 15 12 11 17 17 C 1.37884 * 120.00015 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99689 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00075 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47180 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47338 * 119.99660 * 19 17 15 22 22 H 1.48501 * 109.47274 * 240.00008 * 19 17 15 23 23 H 1.08998 * 109.47286 * 239.99944 * 1 2 3 24 24 H 1.09002 * 109.47228 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47155 * 120.00211 * 1 2 3 26 26 H 1.08000 * 120.05169 * 359.95239 * 5 4 2 27 27 H 1.08999 * 109.47176 * 89.99742 * 7 6 5 28 28 H 1.09004 * 109.47055 * 210.00070 * 7 6 5 29 29 H 1.09002 * 109.47074 * 329.99525 * 7 6 5 30 30 H 1.07999 * 119.75306 * 179.97438 * 8 6 5 31 31 H 1.08000 * 119.95400 * 180.30492 * 9 8 6 32 32 H 0.97005 * 120.00318 * 144.40563 * 11 10 9 33 33 H 0.97002 * 119.99434 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5451 -2.4859 0.0006 6 6 2.2404 -3.6736 0.0006 7 6 1.4903 -4.9806 0.0012 8 6 3.6274 -3.6749 0.0011 9 6 4.3283 -2.4869 -0.0052 10 6 3.6469 -1.2759 0.0006 11 7 4.3494 -0.0800 0.0008 12 16 5.7778 0.0411 0.8299 13 8 5.5567 -0.5571 2.0996 14 8 6.2230 1.3810 0.6688 15 6 6.9515 -0.9764 -0.0019 16 1 6.6596 -1.5276 -0.8837 17 6 8.2424 -1.0699 0.4735 18 7 8.5977 -0.3991 1.5475 19 14 9.4865 -2.1491 -0.4078 20 1 8.8408 -2.7931 -1.5799 21 1 10.6274 -1.3165 -0.8662 22 1 9.9801 -3.1964 0.5221 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 0.4651 -2.4914 0.0009 27 1 1.3089 -5.2959 -1.0264 28 1 2.0815 -5.7387 0.5150 29 1 0.5377 -4.8526 0.5154 30 1 4.1626 -4.6130 0.0015 31 1 5.4083 -2.4979 -0.0097 32 1 4.0041 0.6855 -0.4849 33 1 9.5060 -0.4646 1.8818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = -107.694710 kcal Electronic energy + Delta-G solvation = -20394.402903 eV Core-core repulsion = 17125.433720 eV Total energy + Delta-G solvation = -3268.969183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05659 -38.08009 -35.43571 -34.91512 -34.08418 -33.22886 -31.99356 -30.72674 -29.10386 -26.37996 -25.82478 -23.67538 -21.52083 -19.60414 -18.87901 -17.91637 -17.10902 -16.35497 -15.99989 -15.45548 -14.96810 -14.72651 -14.21929 -14.05817 -13.93403 -13.87266 -13.59163 -13.27949 -12.45723 -12.28565 -12.14177 -12.12058 -11.91460 -11.75189 -11.56301 -11.30175 -10.90247 -10.64496 -10.60358 -10.42560 -10.30580 -10.21889 -9.38424 -9.31628 -8.88310 -8.73989 -7.68356 -6.80441 -5.45104 0.93070 1.64757 2.13386 2.63635 3.00269 3.08999 3.15473 3.96103 4.01554 4.23985 4.50515 4.55382 4.88404 5.07033 5.13952 5.26915 5.36878 5.37542 5.54043 5.57746 5.64273 5.73340 5.87057 5.94472 5.99313 6.11135 6.36674 6.43206 6.55606 6.76213 6.89818 7.14533 7.25200 7.65737 7.81680 7.91275 8.75988 10.13767 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.006937 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.259863 B = 4035.190436 C = 5144.908205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.463 6.463 4 C -0.224 4.224 5 C -0.050 4.050 6 C -0.143 4.143 7 C -0.104 4.104 8 C -0.050 4.050 9 C -0.185 4.185 10 C 0.260 3.740 11 N -1.056 6.056 12 S 2.698 3.302 13 O -0.990 6.990 14 O -0.993 6.993 15 C -1.023 5.023 16 H 0.111 0.889 17 C 0.134 3.866 18 N -0.839 5.839 19 Si 0.923 3.077 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.269 1.269 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.128 0.872 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.167 0.833 32 H 0.423 0.577 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -8.340 -5.104 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.276 3.724 3 O -0.340 6.340 4 C -0.230 4.230 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.161 4.161 8 C -0.069 4.069 9 C -0.205 4.205 10 C 0.157 3.843 11 N -0.800 5.800 12 S 2.799 3.201 13 O -0.980 6.980 14 O -0.984 6.984 15 C -1.156 5.156 16 H 0.129 0.871 17 C -0.085 4.085 18 N -0.468 5.468 19 Si 0.746 3.254 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.194 1.194 23 H 0.110 0.890 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.146 0.854 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.185 0.815 32 H 0.263 0.737 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.033 -7.189 -4.082 15.433 hybrid contribution 0.697 -0.607 -1.026 1.381 sum -12.335 -7.796 -5.108 15.460 Atomic orbital electron populations 1.22205 0.94015 1.04788 1.04248 1.22261 0.91504 0.87552 0.71122 1.90443 1.71708 1.34446 1.37399 1.20255 0.92802 0.95187 1.14728 1.20993 0.99128 0.90504 0.96227 1.19708 0.93921 0.95138 1.05644 1.20677 0.99562 0.94057 1.01832 1.21065 0.93205 0.97795 0.94829 1.22054 1.03643 0.90815 1.04023 1.17610 0.89982 0.86309 0.90390 1.54371 1.41943 1.17480 1.66214 1.01195 0.71094 0.74425 0.73433 1.93402 1.84986 1.78938 1.40667 1.93398 1.79256 1.38943 1.86763 1.30603 1.10902 1.46693 1.27440 0.87092 1.24774 0.97944 0.92964 0.92867 1.69905 1.21739 1.35683 1.19485 0.86085 0.79600 0.79716 0.79975 1.18373 1.19470 1.19432 0.89014 0.89947 0.89068 0.85383 0.91708 0.91702 0.91925 0.85325 0.81543 0.73697 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 8.93 36.00 0.32 -1.61 16 2 C 0.40 6.18 7.21 -30.91 -0.22 5.96 16 3 O -0.46 -8.95 14.65 5.53 0.08 -8.86 16 4 C -0.22 -3.71 5.88 -104.91 -0.62 -4.33 16 5 C -0.05 -0.64 9.10 -39.12 -0.36 -1.00 16 6 C -0.14 -1.84 5.87 -104.67 -0.61 -2.45 16 7 C -0.10 -0.94 10.00 36.00 0.36 -0.58 16 8 C -0.05 -0.75 9.67 -39.52 -0.38 -1.14 16 9 C -0.18 -3.54 9.02 -39.42 -0.36 -3.89 16 10 C 0.26 5.24 6.15 -83.58 -0.51 4.73 16 11 N -1.06 -23.95 5.06 32.58 0.16 -23.78 16 12 S 2.70 74.41 4.66 -107.50 -0.50 73.91 16 13 O -0.99 -29.63 17.48 -57.17 -1.00 -30.63 16 14 O -0.99 -30.31 18.02 -57.17 -1.03 -31.34 16 15 C -1.02 -27.48 7.65 30.60 0.23 -27.24 16 16 H 0.11 2.67 6.77 -52.48 -0.36 2.32 16 17 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 18 N -0.84 -24.31 13.19 55.43 0.73 -23.58 16 19 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 24 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 25 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.13 1.15 7.05 -52.49 -0.37 0.78 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.17 3.47 4.42 -52.49 -0.23 3.24 16 32 H 0.42 9.09 6.57 -34.47 -0.23 8.86 16 33 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -35.94 298.64 -7.58 -43.53 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.26 Total: 9.43 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -2.24 Total: -28.03 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.90 Total: -47.36 kcal Atomic # 8 Polarization: -68.88 SS G_CDS: -1.95 Total: -70.83 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 74.41 SS G_CDS: -0.50 Total: 73.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.94 -7.58 -43.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.168 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds