Wall clock time and date at job start Tue Mar 31 2020 05:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00251 * 2 1 4 4 C 1.46894 * 111.00265 * 123.95963 * 2 1 3 5 5 C 1.53005 * 109.47332 * 169.99930 * 4 2 1 6 6 N 1.46905 * 109.47090 * 185.02149 * 5 4 2 7 7 C 1.46899 * 111.00307 * 67.67497 * 6 5 4 8 8 C 1.50697 * 109.47320 * 199.96190 * 7 6 5 9 9 H 1.08001 * 119.99645 * 5.19790 * 8 7 6 10 10 C 1.37879 * 120.00068 * 185.19690 * 8 7 6 11 11 N 1.31510 * 120.00159 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99893 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47138 * 269.99794 * 12 10 8 14 14 H 1.48499 * 109.47277 * 29.99592 * 12 10 8 15 15 H 1.48496 * 109.47004 * 149.99785 * 12 10 8 16 16 C 1.46895 * 110.99814 * 191.63387 * 6 5 4 17 17 C 1.53017 * 109.46802 * 288.62084 * 16 6 5 18 18 C 1.52994 * 109.45744 * 164.04809 * 17 16 6 19 19 C 1.52974 * 109.51237 * 315.98665 * 18 17 16 20 20 C 1.53011 * 109.46939 * 112.93601 * 19 18 17 21 21 C 1.53007 * 109.43259 * 284.04163 * 20 19 18 22 22 C 1.52992 * 109.47880 * 75.96170 * 21 20 19 23 23 C 1.52999 * 109.50457 * 247.06218 * 22 21 20 24 24 H 1.08998 * 109.46724 * 296.03892 * 1 2 3 25 25 H 1.08998 * 109.46990 * 56.04180 * 1 2 3 26 26 H 1.09004 * 109.47012 * 176.04498 * 1 2 3 27 27 H 1.08994 * 109.47735 * 183.95302 * 3 2 1 28 28 H 1.09004 * 109.47377 * 303.96091 * 3 2 1 29 29 H 1.09007 * 109.46894 * 63.95508 * 3 2 1 30 30 H 1.08998 * 109.47468 * 49.99741 * 4 2 1 31 31 H 1.09003 * 109.47450 * 290.00045 * 4 2 1 32 32 H 1.09000 * 109.46993 * 65.01915 * 5 4 2 33 33 H 1.08996 * 109.47111 * 305.01882 * 5 4 2 34 34 H 1.08997 * 109.46660 * 79.95961 * 7 6 5 35 35 H 1.09002 * 109.46834 * 319.96693 * 7 6 5 36 36 H 0.96993 * 120.00389 * 179.97438 * 11 10 8 37 37 H 1.08992 * 109.47272 * 48.62220 * 16 6 5 38 38 H 1.09001 * 109.47525 * 284.04376 * 17 16 6 39 39 H 1.08997 * 109.47495 * 44.05379 * 17 16 6 40 40 H 1.09007 * 109.46342 * 195.97595 * 18 17 16 41 41 H 1.09001 * 109.45944 * 75.99713 * 18 17 16 42 42 H 1.09003 * 109.47044 * 352.94084 * 19 18 17 43 43 H 1.08993 * 109.47556 * 232.93842 * 19 18 17 44 44 H 1.09005 * 109.47375 * 164.05813 * 20 19 18 45 45 H 1.08998 * 109.48566 * 44.03960 * 20 19 18 46 46 H 1.09000 * 109.46672 * 315.96110 * 21 20 19 47 47 H 1.09000 * 109.46689 * 195.96486 * 21 20 19 48 48 H 1.09002 * 109.45888 * 127.05432 * 22 21 20 49 49 H 1.08996 * 109.46670 * 7.07397 * 22 21 20 50 50 H 1.09004 * 109.47233 * 284.02013 * 23 22 21 51 51 H 1.08996 * 109.47409 * 164.01269 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 3.5045 -0.9554 0.9702 6 7 4.0112 -1.8220 2.0427 7 6 3.5029 -3.1926 1.8965 8 6 3.6155 -3.9134 3.2151 9 1 3.9445 -3.3809 4.0952 10 6 3.2983 -5.2526 3.2980 11 7 3.3969 -5.8818 4.4486 12 14 2.7298 -6.1737 1.7755 13 1 1.2514 -6.0852 1.6666 14 1 3.3519 -5.5693 0.5702 15 1 3.1340 -7.5988 1.8795 16 6 5.4795 -1.8065 2.0827 17 6 6.0307 -2.5631 0.8722 18 6 7.5102 -2.2204 0.6875 19 6 7.7108 -0.7134 0.8578 20 6 8.5312 -0.4478 2.1218 21 6 7.6423 -0.6314 3.3535 22 6 7.4298 -2.1245 3.6113 23 6 5.9619 -2.4809 3.3686 24 1 -0.3633 0.4511 0.9234 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3432 -0.0708 28 1 1.5898 1.9164 -0.8524 29 1 1.7044 1.8723 0.9234 30 1 1.5090 -1.7407 1.1755 31 1 1.7976 -0.2250 2.0628 32 1 4.0002 0.0140 1.0216 33 1 3.7079 -1.4167 0.0038 34 1 4.0892 -3.7190 1.1434 35 1 2.4582 -3.1615 1.5873 36 1 3.1735 -6.8239 4.5069 37 1 5.8327 -0.7756 2.0585 38 1 5.9236 -3.6356 1.0344 39 1 5.4764 -2.2734 -0.0205 40 1 7.8303 -2.5189 -0.3108 41 1 8.1019 -2.7521 1.4327 42 1 6.7402 -0.2253 0.9454 43 1 8.2400 -0.3171 -0.0087 44 1 8.9140 0.5726 2.0988 45 1 9.3653 -1.1479 2.1678 46 1 6.6788 -0.1518 3.1810 47 1 8.1238 -0.1781 4.2199 48 1 7.6941 -2.3560 4.6431 49 1 8.0605 -2.7029 2.9363 50 1 5.3600 -2.1341 4.2086 51 1 5.8617 -3.5619 3.2716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208127464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:26 Heat of formation + Delta-G solvation = 16.030884 kcal Electronic energy + Delta-G solvation = -24778.519695 eV Core-core repulsion = 21713.213826 eV Total energy + Delta-G solvation = -3065.305869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.60201 -37.51861 -35.73904 -32.59644 -32.22413 -31.48488 -28.96895 -27.49900 -27.42037 -25.55777 -24.87222 -23.07900 -21.94201 -21.04193 -20.63568 -19.66106 -18.18280 -16.74973 -16.02001 -15.33466 -15.19510 -14.80406 -14.56366 -14.25027 -13.85613 -13.72602 -13.39938 -13.36695 -13.09344 -12.83702 -12.46266 -12.40958 -12.24808 -11.86798 -11.65274 -11.62244 -11.41458 -11.27121 -11.05502 -10.89102 -10.82489 -10.58115 -10.43479 -10.37070 -10.27552 -10.00424 -9.89950 -9.80079 -9.29479 -9.24352 -8.88448 -8.45545 -8.21132 -7.20921 -5.98366 -3.91762 3.30633 3.38743 3.41543 4.04722 4.47008 4.84753 5.01405 5.13613 5.14743 5.23836 5.29467 5.33118 5.45016 5.47709 5.53172 5.59673 5.62500 5.65519 5.66659 5.77433 5.81672 5.86184 5.91201 5.93847 5.97952 6.07673 6.14961 6.21652 6.27801 6.30403 6.33979 6.41180 6.43322 6.49151 6.56030 6.63443 6.70056 6.76407 6.89806 7.00998 7.04168 7.18834 7.20458 7.26741 7.50828 7.74886 8.01716 8.18819 8.75280 9.13817 9.64290 11.14047 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.008533 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.953912 B = 3280.566249 C = 5498.816792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.057 3.943 5 C 0.061 3.939 6 N -0.525 5.525 7 C 0.150 3.850 8 C -0.497 4.497 9 H 0.090 0.910 10 C 0.067 3.933 11 N -0.902 5.902 12 Si 0.864 3.136 13 H -0.278 1.278 14 H -0.267 1.267 15 H -0.288 1.288 16 C 0.088 3.912 17 C -0.150 4.150 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.102 4.102 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.001 0.999 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 12.355 -7.784 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.068 4.068 6 N -0.248 5.248 7 C 0.024 3.976 8 C -0.536 4.536 9 H 0.108 0.892 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.692 3.308 13 H -0.204 1.204 14 H -0.192 1.192 15 H -0.214 1.214 16 C -0.020 4.020 17 C -0.189 4.189 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.139 4.139 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.395 12.130 -7.677 15.013 hybrid contribution -0.441 -0.629 -0.869 1.160 sum 3.953 11.500 -8.546 14.864 Atomic orbital electron populations 1.22339 0.87608 1.02223 0.99999 1.61955 1.07618 1.13580 1.44327 1.22397 1.00987 0.89147 0.99920 1.22193 0.96017 0.98488 0.90388 1.21936 0.94010 0.96976 0.93882 1.62185 1.07532 1.11998 1.43078 1.20374 0.94448 0.84951 0.97797 1.21238 1.43511 0.93828 0.94978 0.89231 1.24874 0.95703 0.97533 0.95284 1.69879 1.49877 1.10316 1.24134 0.87033 0.79497 0.79467 0.84825 1.20442 1.19216 1.21437 1.22060 0.86771 0.98909 0.94287 1.22290 0.95163 1.02222 0.99191 1.21801 0.97563 0.95754 1.00887 1.21806 1.00439 0.96998 0.97073 1.21698 0.98054 1.00480 0.95153 1.21841 1.00064 0.97809 0.96809 1.21949 0.98985 0.95052 1.00689 1.21846 0.92412 1.02912 0.96750 0.95764 0.91819 0.91379 0.91287 0.92011 0.95794 0.90028 0.94131 0.92418 0.94997 0.98111 0.96322 0.92894 0.89876 0.91053 0.93100 0.93273 0.90834 0.91095 0.93100 0.92983 0.92211 0.90850 0.93096 0.92859 0.91803 0.91404 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 60.06 0.57 0.91 16 2 N -0.55 -7.92 5.02 -251.26 -1.26 -9.18 16 3 C 0.02 0.29 9.32 60.06 0.56 0.85 16 4 C 0.06 0.95 5.04 -3.82 -0.02 0.93 16 5 C 0.06 1.05 4.35 -3.82 -0.02 1.03 16 6 N -0.52 -10.47 4.45 -228.07 -1.01 -11.48 16 7 C 0.15 3.50 3.47 -4.98 -0.02 3.48 16 8 C -0.50 -13.38 7.33 -34.44 -0.25 -13.63 16 9 H 0.09 2.61 5.99 -52.49 -0.31 2.29 16 10 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 11 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 12 Si 0.86 21.36 27.57 -169.99 -4.69 16.67 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.42 6.39 56.52 0.36 -6.06 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 C 0.09 1.56 1.59 -67.70 -0.11 1.45 16 17 C -0.15 -2.56 3.88 -26.73 -0.10 -2.67 16 18 C -0.12 -1.72 5.48 -26.75 -0.15 -1.87 16 19 C -0.13 -1.57 5.47 -26.74 -0.15 -1.72 16 20 C -0.12 -1.38 5.59 -26.72 -0.15 -1.53 16 21 C -0.13 -1.71 5.47 -26.73 -0.15 -1.86 16 22 C -0.13 -2.00 5.48 -26.74 -0.15 -2.15 16 23 C -0.10 -1.95 3.48 -26.73 -0.09 -2.04 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 27 H 0.07 0.82 6.58 -51.93 -0.34 0.47 16 28 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 1.52 6.09 -51.93 -0.32 1.21 16 31 H 0.04 0.70 8.12 -51.93 -0.42 0.27 16 32 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 33 H 0.03 0.58 6.86 -51.93 -0.36 0.22 16 34 H 0.00 0.03 4.41 -51.93 -0.23 -0.20 16 35 H 0.02 0.45 5.60 -51.93 -0.29 0.16 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.08 1.35 2.57 -51.93 -0.13 1.22 16 38 H 0.07 1.41 6.66 -51.93 -0.35 1.06 16 39 H 0.05 0.88 6.51 -51.93 -0.34 0.54 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.05 4.69 -51.93 -0.24 0.80 16 42 H 0.07 0.94 5.47 -51.93 -0.28 0.66 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 46 H 0.07 1.05 5.47 -51.93 -0.28 0.77 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.96 4.69 -51.93 -0.24 0.71 16 50 H 0.07 1.45 7.09 -51.93 -0.37 1.08 16 51 H 0.09 2.06 6.08 -51.93 -0.32 1.74 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -28.40 349.14 -10.19 -38.59 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.95 Total: 3.44 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.31 Total: -17.03 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -1.50 Total: -46.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.69 Total: 16.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.40 -10.19 -38.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208127464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.622 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds