Wall clock time and date at job start Tue Mar 31 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00251 * 2 1 4 4 C 1.46894 * 111.00265 * 123.95963 * 2 1 3 5 5 C 1.53005 * 109.47332 * 169.99930 * 4 2 1 6 6 N 1.46905 * 109.47090 * 185.02149 * 5 4 2 7 7 C 1.46899 * 111.00307 * 67.67497 * 6 5 4 8 8 C 1.50697 * 109.47320 * 199.96190 * 7 6 5 9 9 H 1.08001 * 119.99645 * 5.19790 * 8 7 6 10 10 C 1.37879 * 120.00068 * 185.19690 * 8 7 6 11 11 N 1.31510 * 120.00159 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99893 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47138 * 269.99794 * 12 10 8 14 14 H 1.48499 * 109.47277 * 29.99592 * 12 10 8 15 15 H 1.48496 * 109.47004 * 149.99785 * 12 10 8 16 16 C 1.46895 * 110.99814 * 191.63387 * 6 5 4 17 17 C 1.53017 * 109.46802 * 288.62084 * 16 6 5 18 18 C 1.52994 * 109.45744 * 164.04809 * 17 16 6 19 19 C 1.52974 * 109.51237 * 315.98665 * 18 17 16 20 20 C 1.53011 * 109.46939 * 112.93601 * 19 18 17 21 21 C 1.53007 * 109.43259 * 284.04163 * 20 19 18 22 22 C 1.52992 * 109.47880 * 75.96170 * 21 20 19 23 23 C 1.52999 * 109.50457 * 247.06218 * 22 21 20 24 24 H 1.08998 * 109.46724 * 296.03892 * 1 2 3 25 25 H 1.08998 * 109.46990 * 56.04180 * 1 2 3 26 26 H 1.09004 * 109.47012 * 176.04498 * 1 2 3 27 27 H 1.08994 * 109.47735 * 183.95302 * 3 2 1 28 28 H 1.09004 * 109.47377 * 303.96091 * 3 2 1 29 29 H 1.09007 * 109.46894 * 63.95508 * 3 2 1 30 30 H 1.08998 * 109.47468 * 49.99741 * 4 2 1 31 31 H 1.09003 * 109.47450 * 290.00045 * 4 2 1 32 32 H 1.09000 * 109.46993 * 65.01915 * 5 4 2 33 33 H 1.08996 * 109.47111 * 305.01882 * 5 4 2 34 34 H 1.08997 * 109.46660 * 79.95961 * 7 6 5 35 35 H 1.09002 * 109.46834 * 319.96693 * 7 6 5 36 36 H 0.96993 * 120.00389 * 179.97438 * 11 10 8 37 37 H 1.08992 * 109.47272 * 48.62220 * 16 6 5 38 38 H 1.09001 * 109.47525 * 284.04376 * 17 16 6 39 39 H 1.08997 * 109.47495 * 44.05379 * 17 16 6 40 40 H 1.09007 * 109.46342 * 195.97595 * 18 17 16 41 41 H 1.09001 * 109.45944 * 75.99713 * 18 17 16 42 42 H 1.09003 * 109.47044 * 352.94084 * 19 18 17 43 43 H 1.08993 * 109.47556 * 232.93842 * 19 18 17 44 44 H 1.09005 * 109.47375 * 164.05813 * 20 19 18 45 45 H 1.08998 * 109.48566 * 44.03960 * 20 19 18 46 46 H 1.09000 * 109.46672 * 315.96110 * 21 20 19 47 47 H 1.09000 * 109.46689 * 195.96486 * 21 20 19 48 48 H 1.09002 * 109.45888 * 127.05432 * 22 21 20 49 49 H 1.08996 * 109.46670 * 7.07397 * 22 21 20 50 50 H 1.09004 * 109.47233 * 284.02013 * 23 22 21 51 51 H 1.08996 * 109.47409 * 164.01269 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 3.5045 -0.9554 0.9702 6 7 4.0112 -1.8220 2.0427 7 6 3.5029 -3.1926 1.8965 8 6 3.6155 -3.9134 3.2151 9 1 3.9445 -3.3809 4.0952 10 6 3.2983 -5.2526 3.2980 11 7 3.3969 -5.8818 4.4486 12 14 2.7298 -6.1737 1.7755 13 1 1.2514 -6.0852 1.6666 14 1 3.3519 -5.5693 0.5702 15 1 3.1340 -7.5988 1.8795 16 6 5.4795 -1.8065 2.0827 17 6 6.0307 -2.5631 0.8722 18 6 7.5102 -2.2204 0.6875 19 6 7.7108 -0.7134 0.8578 20 6 8.5312 -0.4478 2.1218 21 6 7.6423 -0.6314 3.3535 22 6 7.4298 -2.1245 3.6113 23 6 5.9619 -2.4809 3.3686 24 1 -0.3633 0.4511 0.9234 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3432 -0.0708 28 1 1.5898 1.9164 -0.8524 29 1 1.7044 1.8723 0.9234 30 1 1.5090 -1.7407 1.1755 31 1 1.7976 -0.2250 2.0628 32 1 4.0002 0.0140 1.0216 33 1 3.7079 -1.4167 0.0038 34 1 4.0892 -3.7190 1.1434 35 1 2.4582 -3.1615 1.5873 36 1 3.1735 -6.8239 4.5069 37 1 5.8327 -0.7756 2.0585 38 1 5.9236 -3.6356 1.0344 39 1 5.4764 -2.2734 -0.0205 40 1 7.8303 -2.5189 -0.3108 41 1 8.1019 -2.7521 1.4327 42 1 6.7402 -0.2253 0.9454 43 1 8.2400 -0.3171 -0.0087 44 1 8.9140 0.5726 2.0988 45 1 9.3653 -1.1479 2.1678 46 1 6.6788 -0.1518 3.1810 47 1 8.1238 -0.1781 4.2199 48 1 7.6941 -2.3560 4.6431 49 1 8.0605 -2.7029 2.9363 50 1 5.3600 -2.1341 4.2086 51 1 5.8617 -3.5619 3.2716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208127464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:25 Heat of formation + Delta-G solvation = -2.268722 kcal Electronic energy + Delta-G solvation = -24779.313226 eV Core-core repulsion = 21713.213826 eV Total energy + Delta-G solvation = -3066.099400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99725 -38.69979 -37.09241 -34.59135 -33.61899 -32.76255 -30.64948 -29.03995 -28.45120 -26.85503 -26.16950 -24.69730 -23.33591 -22.27319 -21.89690 -21.06980 -19.64023 -18.78557 -17.44935 -16.79459 -16.45153 -16.03508 -15.93220 -15.74994 -15.22841 -14.92770 -14.74179 -14.68097 -14.56958 -14.40651 -14.03121 -13.80551 -13.51135 -13.20970 -12.97202 -12.87229 -12.67023 -12.55017 -12.46201 -12.38343 -12.22024 -12.01140 -11.95692 -11.77384 -11.68399 -11.58930 -11.43561 -11.24025 -10.96929 -10.72670 -10.53184 -10.43971 -9.32592 -8.83692 -8.19323 -6.15545 1.31029 1.33367 1.42010 2.36601 2.84957 3.13199 3.49723 3.81587 3.94817 4.04652 4.07937 4.22683 4.28525 4.32931 4.35880 4.37504 4.42338 4.49833 4.52178 4.53579 4.62076 4.67858 4.74346 4.82987 4.85898 4.92744 4.98295 4.99360 5.01762 5.07403 5.09569 5.13246 5.17056 5.20765 5.24080 5.28397 5.35895 5.38860 5.47406 5.59159 5.66041 5.67807 5.77752 5.82009 6.00555 6.12122 6.18265 6.56535 6.77454 6.89804 7.43490 8.96323 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.008533 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.953912 B = 3280.566249 C = 5498.816792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.023 3.977 4 C 0.065 3.935 5 C 0.068 3.932 6 N -0.541 5.541 7 C 0.164 3.836 8 C -0.487 4.487 9 H 0.055 0.945 10 C 0.010 3.990 11 N -0.949 5.949 12 Si 0.925 3.075 13 H -0.272 1.272 14 H -0.256 1.256 15 H -0.286 1.286 16 C 0.091 3.909 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.092 4.092 24 H 0.025 0.975 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.029 0.971 34 H -0.003 1.003 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.110 0.890 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.049 0.951 49 H 0.072 0.928 50 H 0.035 0.965 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 14.706 -10.273 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.060 4.060 6 N -0.264 5.264 7 C 0.037 3.963 8 C -0.525 4.525 9 H 0.073 0.927 10 C -0.186 4.186 11 N -0.591 5.591 12 Si 0.751 3.249 13 H -0.197 1.197 14 H -0.180 1.180 15 H -0.212 1.212 16 C -0.016 4.016 17 C -0.182 4.182 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.130 4.130 24 H 0.044 0.956 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.091 0.909 50 H 0.053 0.947 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.432 14.508 -10.184 18.539 hybrid contribution -0.763 -1.286 -0.028 1.496 sum 4.668 13.222 -10.212 17.346 Atomic orbital electron populations 1.22403 0.86460 1.02272 1.01137 1.61963 1.08803 1.14928 1.42720 1.22474 1.01205 0.87811 1.00984 1.21996 0.95551 0.97630 0.91178 1.21936 0.94491 0.97108 0.92492 1.62086 1.09105 1.10375 1.44838 1.20068 0.94267 0.86657 0.95269 1.21414 1.41676 0.93892 0.95561 0.92680 1.25620 0.96320 0.98632 0.98070 1.70025 1.51997 1.10653 1.26425 0.86041 0.79267 0.78088 0.81546 1.19696 1.18022 1.21217 1.22134 0.85529 1.00258 0.93724 1.22173 0.97746 0.99795 0.98516 1.21783 0.94790 0.97401 1.01632 1.21778 1.00540 0.95185 0.98443 1.21681 0.97614 1.02109 0.93517 1.21789 1.00266 0.95333 0.98644 1.21896 0.96057 0.97417 1.00765 1.21604 0.94864 0.99932 0.96565 0.95608 0.89423 0.92174 0.91046 0.89847 0.95613 0.92574 0.95026 0.90107 0.95326 0.98566 0.96614 0.92960 0.87297 0.94510 0.92951 0.91888 0.91174 0.91758 0.90831 0.90675 0.91518 0.91772 0.91617 0.93246 0.90947 0.94666 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.57 127.69 1.22 1.81 16 2 N -0.56 -15.07 5.02 -948.86 -4.76 -19.83 16 3 C 0.02 0.49 9.32 127.69 1.19 1.68 16 4 C 0.06 2.13 5.04 86.31 0.44 2.57 16 5 C 0.07 2.27 4.35 86.30 0.38 2.64 16 6 N -0.54 -21.86 4.45 -875.48 -3.89 -25.76 16 7 C 0.16 7.86 3.47 85.56 0.30 8.16 16 8 C -0.49 -27.57 7.33 25.60 0.19 -27.38 16 9 H 0.06 3.44 5.99 -2.91 -0.02 3.43 16 10 C 0.01 0.57 5.47 84.66 0.46 1.04 16 11 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 12 Si 0.93 45.22 27.57 68.60 1.89 47.11 16 13 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.26 -11.93 6.39 99.48 0.64 -11.29 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 C 0.09 3.23 1.59 44.92 0.07 3.30 16 17 C -0.14 -4.84 3.88 30.60 0.12 -4.72 16 18 C -0.12 -3.07 5.48 30.58 0.17 -2.90 16 19 C -0.12 -2.60 5.47 30.59 0.17 -2.43 16 20 C -0.11 -2.21 5.59 30.60 0.17 -2.04 16 21 C -0.12 -3.01 5.47 30.59 0.17 -2.85 16 22 C -0.12 -3.83 5.48 30.59 0.17 -3.66 16 23 C -0.09 -3.69 3.48 30.60 0.11 -3.58 16 24 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 26 H 0.06 1.46 8.12 -2.38 -0.02 1.44 16 27 H 0.07 1.46 6.58 -2.39 -0.02 1.45 16 28 H 0.08 1.41 8.12 -2.38 -0.02 1.39 16 29 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 2.12 6.09 -2.39 -0.01 2.10 16 31 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 32 H 0.08 2.33 6.54 -2.39 -0.02 2.31 16 33 H 0.03 0.99 6.86 -2.39 -0.02 0.97 16 34 H 0.00 -0.16 4.41 -2.39 -0.01 -0.17 16 35 H 0.02 0.77 5.60 -2.39 -0.01 0.76 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.11 3.36 2.57 -2.39 -0.01 3.36 16 38 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 39 H 0.05 1.74 6.51 -2.39 -0.02 1.73 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.07 1.88 4.69 -2.39 -0.01 1.86 16 42 H 0.06 1.47 5.47 -2.39 -0.01 1.46 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 45 H 0.07 1.27 7.47 -2.39 -0.02 1.26 16 46 H 0.06 1.70 5.47 -2.39 -0.01 1.69 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.07 2.12 4.69 -2.39 -0.01 2.11 16 50 H 0.03 1.60 7.09 -2.38 -0.02 1.59 16 51 H 0.04 2.17 6.08 -2.39 -0.01 2.16 16 Total: -1.00 -64.69 349.14 -0.33 -65.02 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.83 Total: 21.07 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.31 Total: -28.37 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -8.36 Total: -104.83 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.89 Total: 47.11 kcal Total: -64.69 -0.33 -65.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208127464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.747 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds