Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39092 * 120.56352 * 306.37185 * 3 2 1 5 5 C 1.39389 * 119.79968 * 180.30028 * 4 3 2 6 6 C 1.47998 * 119.49606 * 179.71413 * 5 4 3 7 7 C 1.39594 * 120.15044 * 129.97879 * 6 5 4 8 8 C 1.37913 * 119.87017 * 179.97438 * 7 6 5 9 9 C 1.38434 * 120.17072 * 0.02562 * 8 7 6 10 10 C 1.38325 * 120.30366 * 359.97438 * 9 8 7 11 11 C 1.38105 * 120.13010 * 359.72431 * 10 9 8 12 12 Cl 1.73597 * 120.08776 * 180.29870 * 11 10 9 13 13 C 1.39981 * 121.00149 * 359.68597 * 5 4 3 14 14 C 1.36004 * 121.19530 * 0.02562 * 13 5 4 15 15 C 1.41040 * 120.10753 * 359.97438 * 14 13 5 16 16 C 1.40448 * 120.49043 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99923 * 205.39055 * 16 15 14 18 18 C 1.40295 * 119.99621 * 25.39360 * 16 15 14 19 19 N 1.30639 * 120.00511 * 16.90873 * 18 16 15 20 20 Si 1.86807 * 119.99985 * 196.90805 * 18 16 15 21 21 H 1.48499 * 109.47021 * 265.18062 * 20 18 16 22 22 H 1.48502 * 109.46857 * 25.17778 * 20 18 16 23 23 H 1.48501 * 109.47218 * 145.17647 * 20 18 16 24 24 H 1.07994 * 120.10119 * 0.02562 * 4 3 2 25 25 H 1.08008 * 120.06969 * 0.02562 * 7 6 5 26 26 H 1.07998 * 119.91420 * 179.97438 * 8 7 6 27 27 H 1.08001 * 119.84580 * 179.97438 * 9 8 7 28 28 H 1.08001 * 119.93160 * 180.02562 * 10 9 8 29 29 H 1.07999 * 119.40444 * 180.02562 * 13 5 4 30 30 H 1.07997 * 119.95013 * 179.97438 * 14 13 5 31 31 H 0.97000 * 120.00054 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2756 -0.7093 0.9644 5 6 4.6694 -0.6926 0.9532 6 6 5.4155 -1.4452 1.9862 7 6 6.4433 -2.3139 1.6155 8 6 7.1351 -3.0120 2.5830 9 6 6.8124 -2.8535 3.9198 10 6 5.7953 -1.9945 4.2952 11 6 5.0985 -1.2846 3.3372 12 17 3.8273 -0.2010 3.8101 13 6 5.3740 0.0248 -0.0207 14 6 4.7233 0.7282 -0.9859 15 6 3.3135 0.7447 -1.0203 16 6 2.6333 1.4688 -2.0132 17 1 1.6306 1.8256 -1.8299 18 6 3.2566 1.7285 -3.2429 19 7 4.3077 1.0402 -3.6009 20 14 2.5835 3.0587 -4.3687 21 1 1.6642 2.4478 -5.3622 22 1 1.8442 4.0625 -3.5619 23 1 3.7071 3.7231 -5.0769 24 1 2.7468 -1.2682 1.7222 25 1 6.6968 -2.4386 0.5730 26 1 7.9302 -3.6846 2.2969 27 1 7.3574 -3.4031 4.6731 28 1 5.5488 -1.8751 5.3399 29 1 6.4539 0.0196 -0.0053 30 1 5.2871 1.2749 -1.7272 31 1 4.7388 1.2201 -4.4510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222431626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = 50.365566 kcal Electronic energy + Delta-G solvation = -18161.657571 eV Core-core repulsion = 15204.807610 eV Total energy + Delta-G solvation = -2956.849962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.11510 -37.49669 -35.97207 -35.13971 -34.32399 -31.67016 -30.51120 -29.89544 -28.96180 -25.68695 -22.76886 -22.41536 -21.71904 -20.54789 -17.85766 -17.42411 -16.33169 -15.62949 -15.02595 -14.91807 -14.37571 -14.02438 -13.56643 -13.32470 -13.04086 -12.88921 -12.65747 -12.13358 -11.94429 -11.74066 -11.56039 -11.38342 -11.32029 -11.17209 -11.05461 -10.82860 -10.59267 -10.45444 -9.97951 -9.75901 -9.61294 -8.69407 -8.41545 -7.76610 -7.48724 -7.23739 -4.78487 1.40310 1.51886 2.18861 2.58607 2.62568 2.86849 2.91067 2.99618 3.62366 3.87125 3.92527 4.17957 4.40531 5.07021 5.12164 5.19563 5.40130 5.43608 5.59805 5.69913 5.93335 6.03721 6.12853 6.28543 6.49838 6.57664 6.61827 6.71541 6.78338 6.97678 7.07970 7.17799 7.46612 7.60862 7.74231 7.80923 8.15525 8.33714 8.49394 8.80441 9.63485 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.005033 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.262368 B = 5561.612660 C = 6381.756257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.301 3.699 3 C -0.189 4.189 4 C 0.013 3.987 5 C -0.214 4.214 6 C 0.023 3.977 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.137 4.137 10 C -0.110 4.110 11 C -0.047 4.047 12 Cl -0.069 7.069 13 C -0.049 4.049 14 C -0.168 4.168 15 C 0.157 3.843 16 C -0.419 4.419 17 H 0.088 0.912 18 C 0.075 3.925 19 N -0.755 5.755 20 Si 0.916 3.084 21 H -0.264 1.264 22 H -0.254 1.254 23 H -0.269 1.269 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -3.265 6.656 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.009 4.009 3 C -0.195 4.195 4 C -0.008 4.008 5 C -0.215 4.215 6 C 0.022 3.978 7 C -0.134 4.134 8 C -0.133 4.133 9 C -0.156 4.156 10 C -0.129 4.129 11 C -0.073 4.073 12 Cl -0.040 7.040 13 C -0.069 4.069 14 C -0.187 4.187 15 C 0.152 3.848 16 C -0.445 4.445 17 H 0.106 0.894 18 C -0.149 4.149 19 N -0.376 5.376 20 Si 0.738 3.262 21 H -0.189 1.189 22 H -0.178 1.178 23 H -0.193 1.193 24 H 0.119 0.881 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.113 0.887 30 H 0.144 0.856 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.467 -3.204 6.489 9.705 hybrid contribution 0.180 0.535 -0.502 0.756 sum 6.647 -2.669 5.986 9.335 Atomic orbital electron populations 1.81020 1.12698 1.13055 1.11968 1.25750 0.92690 0.91336 0.91124 1.16746 0.83250 1.12889 1.06654 1.20538 0.92508 0.93717 0.94027 1.17613 0.91786 1.11024 1.01111 1.18858 0.94093 0.94082 0.90796 1.21322 0.95987 0.96203 0.99844 1.21109 0.99624 0.99544 0.92986 1.20955 0.98357 1.00021 0.96231 1.20892 0.96362 0.96956 0.98667 1.21158 0.94874 0.97477 0.93814 1.98356 1.50410 1.63391 1.91852 1.20387 0.97595 0.95616 0.93258 1.20867 0.93680 1.04292 0.99872 1.18489 0.91632 0.86241 0.88468 1.19845 1.01685 1.26087 0.96909 0.89408 1.26170 0.93916 0.95823 0.99004 1.69709 1.15571 1.31379 1.20931 0.86130 0.79825 0.80602 0.79601 1.18902 1.17769 1.19315 0.88137 0.85246 0.86130 0.86058 0.85766 0.88704 0.85628 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.38 18.54 41.84 0.78 -11.60 16 2 C 0.30 7.14 14.29 -22.47 -0.32 6.82 16 3 C -0.19 -4.36 5.93 -104.26 -0.62 -4.98 16 4 C 0.01 0.27 7.85 -38.84 -0.30 -0.03 16 5 C -0.21 -4.21 5.13 -104.82 -0.54 -4.75 16 6 C 0.02 0.39 5.45 -104.85 -0.57 -0.18 16 7 C -0.12 -1.71 9.47 -39.19 -0.37 -2.08 16 8 C -0.11 -1.42 10.03 -39.63 -0.40 -1.82 16 9 C -0.14 -1.64 10.04 -39.48 -0.40 -2.04 16 10 C -0.11 -1.48 9.82 -39.60 -0.39 -1.87 16 11 C -0.05 -0.75 6.27 -39.09 -0.25 -1.00 16 12 Cl -0.07 -1.14 25.98 -51.86 -1.35 -2.49 16 13 C -0.05 -0.99 9.34 -39.73 -0.37 -1.36 16 14 C -0.17 -3.74 8.62 -39.32 -0.34 -4.08 16 15 C 0.16 3.74 5.73 -104.61 -0.60 3.14 16 16 C -0.42 -10.03 8.56 -37.98 -0.32 -10.35 16 17 H 0.09 2.14 7.38 -52.49 -0.39 1.75 16 18 C 0.08 1.65 5.16 -17.29 -0.09 1.56 16 19 N -0.75 -16.70 10.96 55.57 0.61 -16.09 16 20 Si 0.92 16.72 29.59 -169.99 -5.03 11.69 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.25 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 24 H 0.10 2.01 7.14 -52.49 -0.37 1.63 16 25 H 0.13 1.82 8.03 -52.48 -0.42 1.40 16 26 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.09 1.69 8.00 -52.49 -0.42 1.28 16 30 H 0.13 2.82 6.20 -52.49 -0.33 2.50 16 31 H 0.29 5.76 8.29 -40.82 -0.34 5.42 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -24.96 297.29 -8.72 -33.68 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -2.33 Total: 3.34 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -5.88 Total: -23.02 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 1.38 Total: -27.70 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.35 Total: -2.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.96 -8.72 -33.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222431626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.050 kcal (2) G-P(sol) polarization free energy of solvation -24.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds