Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39092 * 120.56352 * 306.37185 * 3 2 1 5 5 C 1.39389 * 119.79968 * 180.30028 * 4 3 2 6 6 C 1.47998 * 119.49606 * 179.71413 * 5 4 3 7 7 C 1.39594 * 120.15044 * 129.97879 * 6 5 4 8 8 C 1.37913 * 119.87017 * 179.97438 * 7 6 5 9 9 C 1.38434 * 120.17072 * 0.02562 * 8 7 6 10 10 C 1.38325 * 120.30366 * 359.97438 * 9 8 7 11 11 C 1.38105 * 120.13010 * 359.72431 * 10 9 8 12 12 Cl 1.73597 * 120.08776 * 180.29870 * 11 10 9 13 13 C 1.39981 * 121.00149 * 359.68597 * 5 4 3 14 14 C 1.36004 * 121.19530 * 0.02562 * 13 5 4 15 15 C 1.41040 * 120.10753 * 359.97438 * 14 13 5 16 16 C 1.40448 * 120.49043 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99923 * 205.39055 * 16 15 14 18 18 C 1.40295 * 119.99621 * 25.39360 * 16 15 14 19 19 N 1.30639 * 120.00511 * 16.90873 * 18 16 15 20 20 Si 1.86807 * 119.99985 * 196.90805 * 18 16 15 21 21 H 1.48499 * 109.47021 * 265.18062 * 20 18 16 22 22 H 1.48502 * 109.46857 * 25.17778 * 20 18 16 23 23 H 1.48501 * 109.47218 * 145.17647 * 20 18 16 24 24 H 1.07994 * 120.10119 * 0.02562 * 4 3 2 25 25 H 1.08008 * 120.06969 * 0.02562 * 7 6 5 26 26 H 1.07998 * 119.91420 * 179.97438 * 8 7 6 27 27 H 1.08001 * 119.84580 * 179.97438 * 9 8 7 28 28 H 1.08001 * 119.93160 * 180.02562 * 10 9 8 29 29 H 1.07999 * 119.40444 * 180.02562 * 13 5 4 30 30 H 1.07997 * 119.95013 * 179.97438 * 14 13 5 31 31 H 0.97000 * 120.00054 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2756 -0.7093 0.9644 5 6 4.6694 -0.6926 0.9532 6 6 5.4155 -1.4452 1.9862 7 6 6.4433 -2.3139 1.6155 8 6 7.1351 -3.0120 2.5830 9 6 6.8124 -2.8535 3.9198 10 6 5.7953 -1.9945 4.2952 11 6 5.0985 -1.2846 3.3372 12 17 3.8273 -0.2010 3.8101 13 6 5.3740 0.0248 -0.0207 14 6 4.7233 0.7282 -0.9859 15 6 3.3135 0.7447 -1.0203 16 6 2.6333 1.4688 -2.0132 17 1 1.6306 1.8256 -1.8299 18 6 3.2566 1.7285 -3.2429 19 7 4.3077 1.0402 -3.6009 20 14 2.5835 3.0587 -4.3687 21 1 1.6642 2.4478 -5.3622 22 1 1.8442 4.0625 -3.5619 23 1 3.7071 3.7231 -5.0769 24 1 2.7468 -1.2682 1.7222 25 1 6.6968 -2.4386 0.5730 26 1 7.9302 -3.6846 2.2969 27 1 7.3574 -3.4031 4.6731 28 1 5.5488 -1.8751 5.3399 29 1 6.4539 0.0196 -0.0053 30 1 5.2871 1.2749 -1.7272 31 1 4.7388 1.2201 -4.4510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222431626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = 41.330759 kcal Electronic energy + Delta-G solvation = -18162.049350 eV Core-core repulsion = 15204.807610 eV Total energy + Delta-G solvation = -2957.241740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38458 -39.04796 -37.20155 -36.99434 -35.94548 -33.11076 -31.79931 -31.39870 -30.43840 -27.26584 -24.26843 -23.79370 -23.04656 -22.01643 -19.54611 -18.92690 -17.56970 -17.24745 -16.28614 -16.21246 -15.84578 -15.59680 -14.87139 -14.61181 -14.55549 -14.45328 -14.16816 -13.75266 -13.56340 -13.50598 -13.18569 -12.89625 -12.69500 -12.51346 -12.29819 -12.15163 -12.09751 -11.83829 -11.63078 -11.28592 -11.18862 -9.94833 -9.60812 -9.46837 -9.04820 -8.87014 -6.53488 0.20462 0.42578 0.46613 1.04741 1.36175 1.39685 1.46891 1.52386 2.00780 2.12177 2.35575 2.62125 2.88960 3.54766 3.64269 4.02152 4.06879 4.27827 4.32856 4.54014 4.57638 4.62065 4.87651 4.91809 5.08683 5.12505 5.22264 5.40821 5.44685 5.55985 5.62736 5.78380 5.88982 6.05077 6.09755 6.11665 6.43178 6.60566 6.77124 6.94157 8.03098 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.005033 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.262368 B = 5561.612660 C = 6381.756257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.304 3.696 3 C -0.212 4.212 4 C 0.008 3.992 5 C -0.196 4.196 6 C -0.013 4.013 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.120 4.120 10 C -0.113 4.113 11 C -0.059 4.059 12 Cl -0.085 7.085 13 C -0.045 4.045 14 C -0.181 4.181 15 C 0.137 3.863 16 C -0.455 4.455 17 H 0.070 0.930 18 C 0.046 3.954 19 N -0.776 5.776 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.263 1.263 23 H -0.249 1.249 24 H 0.106 0.894 25 H 0.133 0.867 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 -4.517 7.723 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C -0.004 4.004 3 C -0.218 4.218 4 C -0.013 4.013 5 C -0.197 4.197 6 C -0.014 4.014 7 C -0.138 4.138 8 C -0.126 4.126 9 C -0.138 4.138 10 C -0.132 4.132 11 C -0.086 4.086 12 Cl -0.056 7.056 13 C -0.064 4.064 14 C -0.200 4.200 15 C 0.131 3.869 16 C -0.482 4.482 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.398 5.398 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.187 1.187 23 H -0.173 1.173 24 H 0.124 0.876 25 H 0.151 0.849 26 H 0.174 0.826 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.013 -4.471 7.568 12.589 hybrid contribution -0.411 0.742 -0.627 1.055 sum 8.602 -3.729 6.941 11.665 Atomic orbital electron populations 1.80982 1.13116 1.14049 1.12814 1.26006 0.92981 0.90837 0.90602 1.16954 0.82937 1.14179 1.07746 1.20646 0.93260 0.93631 0.93716 1.17904 0.91441 1.09490 1.00907 1.18812 0.95877 0.96115 0.90568 1.21465 0.95380 0.96028 1.00904 1.21509 0.99561 0.98847 0.92645 1.21466 0.96928 0.98366 0.97020 1.21222 0.96226 0.96500 0.99224 1.21338 0.95109 0.98033 0.94090 1.98352 1.51299 1.64086 1.91883 1.20657 0.98879 0.94428 0.92439 1.20865 0.93117 1.05234 1.00748 1.18748 0.92542 0.86718 0.88868 1.19900 1.01552 1.28252 0.98505 0.91174 1.26778 0.94125 0.97259 0.99423 1.69690 1.16171 1.32042 1.21873 0.85236 0.79559 0.77868 0.77600 1.18864 1.18739 1.17257 0.87571 0.84897 0.82644 0.82156 0.83707 0.86220 0.86188 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.76 18.54 19.00 0.35 -26.41 16 2 C 0.30 15.09 14.29 88.33 1.26 16.35 16 3 C -0.21 -10.15 5.93 -19.63 -0.12 -10.27 16 4 C 0.01 0.35 7.85 22.75 0.18 0.53 16 5 C -0.20 -7.65 5.13 -19.99 -0.10 -7.75 16 6 C -0.01 -0.42 5.45 -20.01 -0.11 -0.53 16 7 C -0.12 -3.20 9.47 22.52 0.21 -2.98 16 8 C -0.11 -2.16 10.03 22.24 0.22 -1.94 16 9 C -0.12 -2.24 10.04 22.34 0.22 -2.02 16 10 C -0.11 -2.63 9.82 22.26 0.22 -2.41 16 11 C -0.06 -1.79 6.27 22.59 0.14 -1.65 16 12 Cl -0.09 -2.77 25.98 -2.72 -0.07 -2.84 16 13 C -0.05 -1.80 9.34 22.17 0.21 -1.59 16 14 C -0.18 -8.21 8.62 22.44 0.19 -8.01 16 15 C 0.14 6.77 5.73 -19.86 -0.11 6.66 16 16 C -0.46 -22.84 8.56 23.31 0.20 -22.65 16 17 H 0.07 3.64 7.38 -2.91 -0.02 3.62 16 18 C 0.05 2.08 5.16 85.37 0.44 2.52 16 19 N -0.78 -34.78 10.96 21.89 0.24 -34.54 16 20 Si 0.98 34.70 29.59 68.60 2.03 36.73 16 21 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 24 H 0.11 4.32 7.14 -2.91 -0.02 4.30 16 25 H 0.13 3.40 8.03 -2.91 -0.02 3.37 16 26 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 27 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.12 4.11 8.00 -2.91 -0.02 4.08 16 30 H 0.12 5.52 6.20 -2.91 -0.02 5.51 16 31 H 0.30 11.93 8.29 -92.71 -0.77 11.16 16 Total: -1.00 -55.77 297.29 6.79 -48.98 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.17 Total: 13.83 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.06 Total: -35.75 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.59 Total: -60.94 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -0.07 Total: -2.84 kcal Total: -55.77 6.79 -48.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222431626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.311 kcal (2) G-P(sol) polarization free energy of solvation -55.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds