Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39584 * 120.45415 * 131.57225 * 3 2 1 5 5 C 1.37705 * 120.18351 * 180.02562 * 4 3 2 6 6 C 1.39830 * 121.17400 * 359.97438 * 5 4 3 7 7 C 1.48295 * 119.53940 * 179.97438 * 6 5 4 8 8 C 1.39396 * 120.13318 * 310.00467 * 7 6 5 9 9 C 1.37978 * 119.88484 * 179.97438 * 8 7 6 10 10 C 1.38358 * 120.15782 * 359.97438 * 9 8 7 11 11 C 1.38281 * 120.26783 * 0.02562 * 10 9 8 12 12 C 1.38162 * 120.10716 * 359.74169 * 11 10 9 13 13 Cl 1.73601 * 120.07690 * 180.25547 * 12 11 10 14 14 C 1.38613 * 120.92173 * 359.97438 * 6 5 4 15 15 C 1.40602 * 119.73482 * 359.73113 * 14 6 5 16 16 C 1.40840 * 120.55265 * 180.25439 * 15 14 6 17 17 H 1.07999 * 120.00292 * 155.29698 * 16 15 14 18 18 C 1.40236 * 120.00043 * 335.29626 * 16 15 14 19 19 N 1.30652 * 120.00014 * 342.55510 * 18 16 15 20 20 Si 1.86801 * 119.99782 * 162.55467 * 18 16 15 21 21 H 1.48500 * 109.47246 * 90.00120 * 20 18 16 22 22 H 1.48505 * 109.47048 * 209.99939 * 20 18 16 23 23 H 1.48503 * 109.47362 * 330.00114 * 20 18 16 24 24 H 1.07996 * 119.90763 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.41829 * 179.97438 * 5 4 3 26 26 H 1.08002 * 120.05395 * 359.97438 * 8 7 6 27 27 H 1.08001 * 119.91707 * 179.97438 * 9 8 7 28 28 H 1.08004 * 119.86754 * 179.97438 * 10 9 8 29 29 H 1.07999 * 119.94738 * 180.02562 * 11 10 9 30 30 H 1.07997 * 120.12890 * 180.02562 * 14 6 5 31 31 H 0.97009 * 120.00027 * 185.03970 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2752 0.7994 -0.9002 5 6 4.6522 0.7953 -0.8957 6 6 5.3707 -0.0005 0.0019 7 6 6.8533 0.0227 -0.0253 8 6 7.5338 -0.1436 -1.2304 9 6 8.9132 -0.1206 -1.2499 10 6 9.6219 0.0676 -0.0766 11 6 8.9534 0.2332 1.1225 12 6 7.5722 0.2169 1.1540 13 17 6.7336 0.4316 2.6588 14 6 4.7166 -0.8108 0.9167 15 6 3.3111 -0.8318 0.9499 16 6 2.6289 -1.6446 1.8759 17 1 1.6257 -1.3884 2.1830 18 6 3.2522 -2.7867 2.3990 19 7 4.2979 -3.2922 1.8008 20 14 2.5872 -3.5853 3.9513 21 1 1.5748 -4.6087 3.5868 22 1 3.7006 -4.2320 4.6912 23 1 1.9576 -2.5501 4.8100 24 1 2.7409 1.4217 -1.6027 25 1 5.1869 1.4178 -1.5979 26 1 6.9821 -0.2902 -2.1473 27 1 9.4410 -0.2498 -2.1832 28 1 10.7016 0.0844 -0.0971 29 1 9.5117 0.3802 2.0353 30 1 5.2843 -1.4200 1.6044 31 1 4.6848 -4.1227 2.1195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222432137.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = 52.472548 kcal Electronic energy + Delta-G solvation = -18419.911579 eV Core-core repulsion = 15463.152983 eV Total energy + Delta-G solvation = -2956.758596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.17016 -37.43103 -35.93801 -35.11707 -34.14794 -31.91326 -30.51817 -29.92275 -28.39550 -25.78675 -23.30290 -22.44571 -21.00791 -20.69928 -17.78555 -17.23106 -16.66138 -15.61826 -15.09057 -14.96830 -14.00387 -13.96972 -13.52241 -13.37713 -13.08265 -12.76619 -12.64624 -12.35663 -11.80826 -11.59327 -11.41740 -11.36565 -11.27952 -11.16774 -11.04684 -10.81396 -10.57536 -10.49316 -9.91209 -9.72534 -9.51024 -8.74933 -8.43219 -7.72475 -7.35820 -7.11653 -4.70275 1.30705 1.48394 2.21995 2.61313 2.67464 2.92351 2.96565 3.06709 3.69469 3.85657 3.93496 4.19410 4.46066 5.03596 5.07196 5.18887 5.40481 5.45483 5.52981 5.65742 5.92423 6.01224 6.14282 6.35210 6.44463 6.56417 6.64619 6.71533 6.87567 6.97403 7.04768 7.20488 7.48426 7.69320 7.74417 7.87605 8.20436 8.44046 8.54903 8.84076 9.76444 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.006939 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.684122 B = 4034.101540 C = 5206.111275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.301 3.699 3 C -0.186 4.186 4 C -0.031 4.031 5 C -0.230 4.230 6 C -0.033 4.033 7 C -0.006 4.006 8 C -0.101 4.101 9 C -0.119 4.119 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.030 4.030 13 Cl -0.059 7.059 14 C -0.124 4.124 15 C 0.146 3.854 16 C -0.427 4.427 17 H 0.087 0.913 18 C 0.077 3.923 19 N -0.762 5.762 20 Si 0.911 3.089 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.255 1.255 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 2.564 -0.849 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.009 4.009 3 C -0.192 4.192 4 C -0.051 4.051 5 C -0.250 4.250 6 C -0.034 4.034 7 C -0.007 4.007 8 C -0.120 4.120 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.133 4.133 12 C -0.057 4.057 13 Cl -0.030 7.030 14 C -0.143 4.143 15 C 0.141 3.859 16 C -0.455 4.455 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.384 5.384 20 Si 0.734 3.266 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.179 1.179 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.498 2.410 -0.664 10.791 hybrid contribution 0.209 -0.495 0.723 0.901 sum 10.706 1.915 0.058 10.876 Atomic orbital electron populations 1.81013 1.12772 1.13209 1.12124 1.25817 0.92748 0.91032 0.91288 1.16980 0.83207 1.13111 1.05917 1.20332 0.93506 0.95771 0.95537 1.20031 0.92981 1.07136 1.04822 1.18404 0.88870 0.98261 0.97869 1.19037 0.94094 0.96321 0.91246 1.21251 0.93864 0.99527 0.97314 1.21107 0.94149 1.00327 0.98178 1.20995 0.99616 1.01636 0.92104 1.20926 0.92039 1.01538 0.98839 1.21088 0.92199 1.04698 0.87721 1.98378 1.78336 1.95349 1.30928 1.21486 0.93634 0.99848 0.99300 1.18339 0.91179 0.88326 0.88082 1.19761 1.01393 1.05832 1.18492 0.89536 1.26092 0.93499 0.97171 0.97877 1.69674 1.16824 1.16220 1.35676 0.86209 0.79669 0.79876 0.80818 1.18903 1.19449 1.17857 0.88229 0.88426 0.85072 0.85906 0.85833 0.85493 0.84699 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.47 18.54 41.84 0.78 -11.69 16 2 C 0.30 7.13 14.29 -22.47 -0.32 6.81 16 3 C -0.19 -4.30 5.95 -104.12 -0.62 -4.92 16 4 C -0.03 -0.63 9.74 -39.27 -0.38 -1.01 16 5 C -0.23 -4.51 9.41 -39.18 -0.37 -4.88 16 6 C -0.03 -0.68 5.11 -105.03 -0.54 -1.21 16 7 C -0.01 -0.11 5.45 -104.87 -0.57 -0.68 16 8 C -0.10 -1.53 9.46 -39.25 -0.37 -1.90 16 9 C -0.12 -1.49 10.03 -39.63 -0.40 -1.89 16 10 C -0.13 -1.51 10.04 -39.52 -0.40 -1.91 16 11 C -0.11 -1.59 9.82 -39.59 -0.39 -1.97 16 12 C -0.03 -0.51 6.27 -39.15 -0.25 -0.76 16 13 Cl -0.06 -1.04 25.97 -51.86 -1.35 -2.39 16 14 C -0.12 -2.83 6.79 -38.55 -0.26 -3.09 16 15 C 0.15 3.56 5.73 -104.68 -0.60 2.96 16 16 C -0.43 -10.54 8.57 -37.85 -0.32 -10.86 16 17 H 0.09 2.16 7.38 -52.49 -0.39 1.78 16 18 C 0.08 1.76 5.16 -17.30 -0.09 1.67 16 19 N -0.76 -17.63 10.96 55.56 0.61 -17.02 16 20 Si 0.91 17.51 29.60 -169.99 -5.03 12.48 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 24 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 25 H 0.10 1.68 8.00 -52.49 -0.42 1.26 16 26 H 0.13 1.84 8.03 -52.49 -0.42 1.42 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.14 3.18 5.25 -52.49 -0.28 2.90 16 31 H 0.29 6.07 8.30 -40.82 -0.34 5.74 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -25.91 297.38 -8.72 -34.62 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.33 Total: 3.16 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -5.87 Total: -23.65 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 1.38 Total: -28.71 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.35 Total: -2.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.91 -8.72 -34.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222432137.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.096 kcal (2) G-P(sol) polarization free energy of solvation -25.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds