Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39584 * 120.45415 * 131.57225 * 3 2 1 5 5 C 1.37705 * 120.18351 * 180.02562 * 4 3 2 6 6 C 1.39830 * 121.17400 * 359.97438 * 5 4 3 7 7 C 1.48295 * 119.53940 * 179.97438 * 6 5 4 8 8 C 1.39396 * 120.13318 * 310.00467 * 7 6 5 9 9 C 1.37978 * 119.88484 * 179.97438 * 8 7 6 10 10 C 1.38358 * 120.15782 * 359.97438 * 9 8 7 11 11 C 1.38281 * 120.26783 * 0.02562 * 10 9 8 12 12 C 1.38162 * 120.10716 * 359.74169 * 11 10 9 13 13 Cl 1.73601 * 120.07690 * 180.25547 * 12 11 10 14 14 C 1.38613 * 120.92173 * 359.97438 * 6 5 4 15 15 C 1.40602 * 119.73482 * 359.73113 * 14 6 5 16 16 C 1.40840 * 120.55265 * 180.25439 * 15 14 6 17 17 H 1.07999 * 120.00292 * 155.29698 * 16 15 14 18 18 C 1.40236 * 120.00043 * 335.29626 * 16 15 14 19 19 N 1.30652 * 120.00014 * 342.55510 * 18 16 15 20 20 Si 1.86801 * 119.99782 * 162.55467 * 18 16 15 21 21 H 1.48500 * 109.47246 * 90.00120 * 20 18 16 22 22 H 1.48505 * 109.47048 * 209.99939 * 20 18 16 23 23 H 1.48503 * 109.47362 * 330.00114 * 20 18 16 24 24 H 1.07996 * 119.90763 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.41829 * 179.97438 * 5 4 3 26 26 H 1.08002 * 120.05395 * 359.97438 * 8 7 6 27 27 H 1.08001 * 119.91707 * 179.97438 * 9 8 7 28 28 H 1.08004 * 119.86754 * 179.97438 * 10 9 8 29 29 H 1.07999 * 119.94738 * 180.02562 * 11 10 9 30 30 H 1.07997 * 120.12890 * 180.02562 * 14 6 5 31 31 H 0.97009 * 120.00027 * 185.03970 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2752 0.7994 -0.9002 5 6 4.6522 0.7953 -0.8957 6 6 5.3707 -0.0005 0.0019 7 6 6.8533 0.0227 -0.0253 8 6 7.5338 -0.1436 -1.2304 9 6 8.9132 -0.1206 -1.2499 10 6 9.6219 0.0676 -0.0766 11 6 8.9534 0.2332 1.1225 12 6 7.5722 0.2169 1.1540 13 17 6.7336 0.4316 2.6588 14 6 4.7166 -0.8108 0.9167 15 6 3.3111 -0.8318 0.9499 16 6 2.6289 -1.6446 1.8759 17 1 1.6257 -1.3884 2.1830 18 6 3.2522 -2.7867 2.3990 19 7 4.2979 -3.2922 1.8008 20 14 2.5872 -3.5853 3.9513 21 1 1.5748 -4.6087 3.5868 22 1 3.7006 -4.2320 4.6912 23 1 1.9576 -2.5501 4.8100 24 1 2.7409 1.4217 -1.6027 25 1 5.1869 1.4178 -1.5979 26 1 6.9821 -0.2902 -2.1473 27 1 9.4410 -0.2498 -2.1832 28 1 10.7016 0.0844 -0.0971 29 1 9.5117 0.3802 2.0353 30 1 5.2843 -1.4200 1.6044 31 1 4.6848 -4.1227 2.1195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222432137.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = 42.367656 kcal Electronic energy + Delta-G solvation = -18420.349760 eV Core-core repulsion = 15463.152983 eV Total energy + Delta-G solvation = -2957.196777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42526 -38.99897 -37.20473 -36.95946 -35.83283 -33.34291 -31.76505 -31.47766 -29.82350 -27.52529 -24.72460 -23.67510 -22.55770 -22.10247 -19.48385 -18.85807 -17.97382 -17.09116 -16.38450 -16.27159 -15.59617 -15.25597 -15.06112 -14.62653 -14.59449 -14.47969 -14.16229 -13.83940 -13.48859 -13.37080 -13.09211 -12.86547 -12.64039 -12.56125 -12.33701 -12.23303 -12.10290 -11.91148 -11.53399 -11.28529 -11.14661 -10.00233 -9.62100 -9.44310 -8.93282 -8.79563 -6.50961 -0.01827 0.38344 0.69462 1.03432 1.33130 1.38198 1.43767 1.49864 2.04435 2.10808 2.34956 2.66531 2.85295 3.60705 3.66613 3.86951 4.02986 4.24346 4.41160 4.52242 4.57717 4.71310 4.84054 4.97663 5.06911 5.14198 5.28809 5.35875 5.44220 5.53432 5.61647 5.77936 5.97262 6.00839 6.10259 6.16042 6.46490 6.67250 6.80966 6.97985 8.08922 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.006939 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.684122 B = 4034.101540 C = 5206.111275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.306 3.694 3 C -0.210 4.210 4 C -0.029 4.029 5 C -0.222 4.222 6 C -0.024 4.024 7 C -0.044 4.044 8 C -0.107 4.107 9 C -0.110 4.110 10 C -0.109 4.109 11 C -0.118 4.118 12 C -0.049 4.049 13 Cl -0.081 7.081 14 C -0.144 4.144 15 C 0.125 3.875 16 C -0.464 4.464 17 H 0.069 0.931 18 C 0.047 3.953 19 N -0.784 5.784 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.254 1.254 23 H -0.262 1.262 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.147 0.853 30 H 0.124 0.876 31 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.108 2.856 -1.966 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.003 4.003 3 C -0.216 4.216 4 C -0.050 4.050 5 C -0.241 4.241 6 C -0.025 4.025 7 C -0.045 4.045 8 C -0.125 4.125 9 C -0.128 4.128 10 C -0.127 4.127 11 C -0.137 4.137 12 C -0.075 4.075 13 Cl -0.052 7.052 14 C -0.163 4.163 15 C 0.120 3.880 16 C -0.492 4.492 17 H 0.087 0.913 18 C -0.174 4.174 19 N -0.407 5.407 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.177 1.177 23 H -0.186 1.186 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.157 0.843 27 H 0.179 0.821 28 H 0.183 0.817 29 H 0.164 0.836 30 H 0.142 0.858 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.490 2.709 -1.797 13.876 hybrid contribution -0.501 -0.492 0.926 1.162 sum 12.989 2.218 -0.871 13.206 Atomic orbital electron populations 1.80984 1.13192 1.14106 1.12953 1.26032 0.92972 0.90515 0.90757 1.17233 0.82957 1.14351 1.07062 1.20652 0.94072 0.95201 0.95068 1.20436 0.92788 1.06373 1.04533 1.18738 0.90993 0.96427 0.96310 1.19043 0.92628 0.99829 0.93005 1.21439 0.95336 0.99342 0.96383 1.21544 0.93030 0.98223 1.00026 1.21519 1.01647 0.98630 0.90924 1.21260 0.90791 1.00886 1.00735 1.21310 0.93407 1.06185 0.86624 1.98367 1.79027 1.95557 1.32260 1.21381 0.92966 1.01258 1.00684 1.18650 0.92218 0.88715 0.88440 1.19809 1.01226 1.07588 1.20580 0.91333 1.26683 0.93721 0.97028 0.99927 1.69686 1.17498 1.16793 1.36682 0.85376 0.79472 0.78773 0.77503 1.18588 1.17711 1.18636 0.85561 0.85329 0.84344 0.82126 0.81742 0.83552 0.85839 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.57 18.54 19.01 0.35 -26.22 16 2 C 0.31 14.93 14.29 88.33 1.26 16.19 16 3 C -0.21 -9.94 5.95 -19.54 -0.12 -10.06 16 4 C -0.03 -1.18 9.74 22.47 0.22 -0.97 16 5 C -0.22 -8.41 9.41 22.53 0.21 -8.20 16 6 C -0.02 -0.96 5.11 -20.13 -0.10 -1.07 16 7 C -0.04 -1.53 5.45 -20.02 -0.11 -1.64 16 8 C -0.11 -2.92 9.46 22.49 0.21 -2.70 16 9 C -0.11 -2.23 10.03 22.24 0.22 -2.01 16 10 C -0.11 -2.10 10.04 22.31 0.22 -1.88 16 11 C -0.12 -2.91 9.82 22.26 0.22 -2.69 16 12 C -0.05 -1.59 6.27 22.55 0.14 -1.45 16 13 Cl -0.08 -2.90 25.97 -2.72 -0.07 -2.97 16 14 C -0.14 -6.76 6.79 22.94 0.16 -6.61 16 15 C 0.12 6.33 5.73 -19.90 -0.11 6.22 16 16 C -0.46 -24.07 8.57 23.39 0.20 -23.87 16 17 H 0.07 3.66 7.38 -2.91 -0.02 3.64 16 18 C 0.05 2.24 5.16 85.35 0.44 2.68 16 19 N -0.78 -37.25 10.96 21.87 0.24 -37.01 16 20 Si 0.97 36.73 29.60 68.60 2.03 38.76 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 25 H 0.13 4.05 8.00 -2.91 -0.02 4.02 16 26 H 0.14 3.47 8.03 -2.91 -0.02 3.45 16 27 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.12 6.05 5.25 -2.91 -0.02 6.03 16 31 H 0.30 12.70 8.30 -92.70 -0.77 11.93 16 Total: -1.00 -58.64 297.38 6.79 -51.84 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.17 Total: 13.64 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.07 Total: -38.05 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.59 Total: -63.23 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.07 Total: -2.97 kcal Total: -58.64 6.79 -51.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222432137.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.210 kcal (2) G-P(sol) polarization free energy of solvation -58.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds