Wall clock time and date at job start Tue Mar 31 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48498 * 109.46989 * 274.06688 * 3 2 1 5 5 H 1.48507 * 109.47024 * 34.06643 * 3 2 1 6 6 H 1.48503 * 109.47323 * 154.06589 * 3 2 1 7 7 C 1.37876 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00255 * 4.20613 * 7 2 1 9 9 C 1.50702 * 119.99786 * 184.21022 * 7 2 1 10 10 H 1.08998 * 109.46747 * 334.53589 * 9 7 2 11 11 C 1.52997 * 109.47534 * 94.54089 * 9 7 2 12 12 Cl 1.80301 * 109.47076 * 184.71832 * 11 9 7 13 13 O 1.42900 * 109.46840 * 214.54185 * 9 7 2 14 14 C 1.36012 * 116.99830 * 146.70694 * 13 9 7 15 15 C 1.39121 * 120.31894 * 175.71348 * 14 13 9 16 16 N 1.31272 * 120.99777 * 179.73615 * 15 14 13 17 17 C 1.33397 * 122.23125 * 0.51605 * 16 15 14 18 18 S 1.76018 * 130.21835 * 179.73058 * 17 16 15 19 19 C 1.75284 * 92.24003 * 180.02562 * 18 17 16 20 20 C 1.31811 * 111.43935 * 359.97438 * 19 18 17 21 21 C 1.39825 * 120.28364 * 359.77356 * 17 16 15 22 22 C 1.38094 * 120.32272 * 355.98868 * 14 13 9 23 23 H 0.96999 * 120.00076 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46831 * 64.71791 * 11 9 7 25 25 H 1.08999 * 109.46919 * 304.71914 * 11 9 7 26 26 H 1.07997 * 119.50043 * 359.97385 * 15 14 13 27 27 H 1.08000 * 124.28146 * 179.97438 * 19 18 17 28 28 H 1.07994 * 122.58785 * 180.02562 * 20 19 18 29 29 H 1.07995 * 120.65549 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4106 2.0960 -1.3965 5 1 1.4921 2.6263 0.7843 6 1 3.5871 1.4169 0.6123 7 6 2.0045 -1.1941 0.0005 8 1 1.4667 -2.1281 -0.0676 9 6 3.5085 -1.1958 0.0964 10 1 3.8980 -0.2529 -0.2876 11 6 3.9263 -1.3626 1.5587 12 17 5.7192 -1.2259 1.6908 13 8 4.0337 -2.2777 -0.6755 14 6 5.2356 -2.0784 -1.2801 15 6 5.8529 -3.1141 -1.9742 16 7 7.0104 -2.9351 -2.5669 17 6 7.6563 -1.7685 -2.5290 18 16 9.2002 -1.3008 -3.2330 19 6 9.0721 0.3296 -2.6023 20 6 7.9560 0.4963 -1.9211 21 6 7.1053 -0.6794 -1.8469 22 6 5.8578 -0.8478 -1.2061 23 1 -0.4850 0.8400 -0.0004 24 1 3.6090 -2.3417 1.9177 25 1 3.4572 -0.5850 2.1615 26 1 5.3707 -4.0789 -2.0293 27 1 9.8137 1.1001 -2.7528 28 1 7.6944 1.4340 -1.4537 29 1 5.3993 -0.0304 -0.6695 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225450200.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:47 Heat of formation + Delta-G solvation = 7.113446 kcal Electronic energy + Delta-G solvation = -17530.206041 eV Core-core repulsion = 14571.091384 eV Total energy + Delta-G solvation = -2959.114657 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31479 -38.07275 -35.55894 -35.20017 -33.39456 -31.19348 -30.59818 -28.91222 -25.50253 -23.99287 -23.76630 -21.34647 -20.34345 -18.56895 -17.32179 -16.93462 -16.56351 -15.34476 -15.28482 -14.65677 -14.26799 -13.95340 -13.84049 -13.41062 -13.00391 -12.88618 -12.65882 -12.44605 -12.01708 -11.54228 -11.46156 -11.23679 -10.88541 -10.77078 -10.31010 -10.16826 -9.88100 -9.61248 -9.29980 -9.12690 -8.98755 -8.35362 -7.41173 -6.57595 -4.66096 0.72826 1.43539 1.46934 2.04149 2.37859 2.82447 2.98323 3.01844 3.07676 3.81392 3.95803 3.96825 4.57253 4.77337 4.82773 5.02129 5.10457 5.32967 5.54612 5.69472 5.75542 5.84088 5.86682 6.02458 6.26477 6.36363 6.47520 6.58086 7.01437 7.66441 7.94464 8.18993 8.55692 8.97892 10.52734 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.005934 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.308247 B = 4717.279597 C = 4877.103287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.088 3.912 3 Si 0.859 3.141 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.525 4.525 8 H 0.093 0.907 9 C 0.172 3.828 10 H 0.052 0.948 11 C -0.039 4.039 12 Cl -0.229 7.229 13 O -0.291 6.291 14 C 0.109 3.891 15 C 0.106 3.894 16 N -0.429 5.429 17 C 0.011 3.989 18 S 0.107 5.893 19 C -0.194 4.194 20 C -0.113 4.113 21 C -0.086 4.086 22 C -0.130 4.130 23 H 0.275 0.725 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.171 0.829 27 H 0.169 0.831 28 H 0.145 0.855 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 1.404 -1.883 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.119 4.119 3 Si 0.684 3.316 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.562 4.562 8 H 0.111 0.889 9 C 0.117 3.883 10 H 0.070 0.930 11 C -0.102 4.102 12 Cl -0.203 7.203 13 O -0.202 6.202 14 C 0.057 3.943 15 C -0.064 4.064 16 N -0.139 5.139 17 C -0.233 4.233 18 S 0.365 5.635 19 C -0.328 4.328 20 C -0.144 4.144 21 C -0.096 4.096 22 C -0.159 4.159 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.188 0.812 27 H 0.187 0.813 28 H 0.162 0.838 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.883 0.013 -3.183 15.220 hybrid contribution -1.082 2.623 1.510 3.214 sum 13.801 2.636 -1.673 14.150 Atomic orbital electron populations 1.69828 1.06172 1.28109 1.45899 1.24955 0.94909 0.98847 0.93208 0.87085 0.80810 0.83868 0.79814 1.19054 1.19917 1.18162 1.20665 0.86190 0.96118 1.53207 0.88919 1.20985 0.95476 0.86503 0.85373 0.93036 1.25999 0.76640 1.05412 1.02143 1.98681 1.23978 1.98923 1.98718 1.86379 1.28996 1.43417 1.61417 1.19996 0.87614 0.93539 0.93160 1.22204 0.90439 0.98583 0.95152 1.67141 1.07666 1.21456 1.17638 1.23217 1.00955 0.93688 1.05406 1.83919 1.16857 1.04947 1.57785 1.25068 1.02303 1.00606 1.04795 1.20811 0.93975 0.98380 1.01201 1.19859 0.95989 0.93820 0.99891 1.21551 0.94574 0.98185 1.01557 0.91451 0.88497 0.88258 0.81210 0.81348 0.83756 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.58 13.96 55.43 0.77 -22.81 15 2 C 0.09 2.25 5.47 -17.82 -0.10 2.15 15 3 Si 0.86 18.57 27.26 -169.99 -4.63 13.94 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.19 6.44 56.52 0.36 -4.82 15 7 C -0.52 -13.25 9.24 -34.44 -0.32 -13.57 15 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 15 9 C 0.17 3.71 1.80 -27.88 -0.05 3.66 15 10 H 0.05 1.12 2.40 -51.93 -0.12 0.99 15 11 C -0.04 -0.75 6.32 37.16 0.23 -0.51 15 12 Cl -0.23 -4.12 25.73 -51.86 -1.33 -5.45 15 13 O -0.29 -6.12 9.74 -19.78 -0.19 -6.31 15 14 C 0.11 2.08 5.95 -39.31 -0.23 1.84 15 15 C 0.11 1.85 11.13 -17.46 -0.19 1.66 15 16 N -0.43 -7.65 10.37 -11.67 -0.12 -7.77 15 17 C 0.01 0.19 7.64 -16.28 -0.12 0.06 15 18 S 0.11 1.43 23.23 -107.50 -2.50 -1.07 15 19 C -0.19 -2.29 11.01 28.84 0.32 -1.97 15 20 C -0.11 -1.56 10.39 -38.67 -0.40 -1.96 15 21 C -0.09 -1.46 6.05 -105.35 -0.64 -2.10 15 22 C -0.13 -2.41 7.26 -38.49 -0.28 -2.69 15 23 H 0.28 6.95 8.31 -40.82 -0.34 6.61 15 24 H 0.10 1.77 8.14 -51.92 -0.42 1.35 15 25 H 0.10 1.83 8.14 -51.93 -0.42 1.41 15 26 H 0.17 2.52 8.06 -52.49 -0.42 2.09 15 27 H 0.17 1.39 8.06 -52.49 -0.42 0.96 15 28 H 0.14 1.70 8.06 -52.49 -0.42 1.28 15 29 H 0.15 2.72 5.25 -52.49 -0.28 2.45 15 LS Contribution 277.66 15.07 4.18 4.18 Total: -1.00 -27.33 277.66 -7.72 -35.04 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.11 Total: 3.67 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.78 Total: -13.43 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.65 Total: -30.58 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.19 Total: -6.31 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.63 Total: 13.94 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.50 Total: -1.07 kcal Atomic # 17 Polarization: -4.12 SS G_CDS: -1.33 Total: -5.45 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.33 -7.72 -35.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225450200.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.154 kcal (2) G-P(sol) polarization free energy of solvation -27.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds