Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99782 * 2 1 4 4 H 1.48506 * 109.47138 * 269.99971 * 3 2 1 5 5 H 1.48497 * 109.47390 * 29.99961 * 3 2 1 6 6 H 1.48509 * 109.47019 * 150.00434 * 3 2 1 7 7 C 1.37878 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00062 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00181 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47274 * 300.00562 * 9 7 2 11 11 C 1.53006 * 109.47008 * 60.00102 * 9 7 2 12 12 Cl 1.80289 * 109.47121 * 185.00029 * 11 9 7 13 13 O 1.42894 * 109.47285 * 180.02562 * 9 7 2 14 14 C 1.35326 * 116.99881 * 150.00215 * 13 9 7 15 15 N 1.28684 * 124.80468 * 180.02562 * 14 13 9 16 16 C 1.34815 * 117.92725 * 179.97438 * 15 14 13 17 17 C 1.41099 * 128.76404 * 179.97438 * 16 15 14 18 18 C 1.37184 * 120.43769 * 180.02562 * 17 16 15 19 19 C 1.38742 * 120.60182 * 359.97438 * 18 17 16 20 20 C 1.37690 * 119.97927 * 359.97438 * 19 18 17 21 21 C 1.39282 * 120.19302 * 0.02686 * 20 19 18 22 22 S 1.75800 * 124.81019 * 359.97438 * 14 13 9 23 23 H 0.96994 * 120.00262 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46960 * 305.00749 * 11 9 7 25 25 H 1.08999 * 109.46467 * 64.99873 * 11 9 7 26 26 H 1.08001 * 119.78557 * 359.97438 * 17 16 15 27 27 H 1.07996 * 119.70064 * 180.02562 * 18 17 16 28 28 H 1.07999 * 120.00930 * 180.02562 * 19 18 17 29 29 H 1.07991 * 119.90286 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5800 -1.2495 12 17 -0.6394 -4.0714 -1.1773 13 8 2.1797 -3.5853 -0.0005 14 6 1.7852 -4.7308 0.6023 15 7 2.4988 -5.7981 0.6901 16 6 1.9671 -6.8629 1.3234 17 6 2.5390 -8.1329 1.5490 18 6 1.8372 -9.1018 2.2203 19 6 0.5558 -8.8493 2.6884 20 6 -0.0222 -7.6169 2.4809 21 6 0.6758 -6.6215 1.8012 22 16 0.2258 -4.9714 1.3776 23 1 -0.4850 0.8400 0.0004 24 1 -0.2764 -1.7042 -1.2950 25 1 1.0025 -2.6115 -2.1374 26 1 3.5355 -8.3439 1.1900 27 1 2.2867 -10.0696 2.3867 28 1 0.0121 -9.6189 3.2162 29 1 -1.0198 -7.4219 2.8454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225692978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = 8.307572 kcal Electronic energy + Delta-G solvation = -17214.151319 eV Core-core repulsion = 14255.088442 eV Total energy + Delta-G solvation = -2959.062876 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83125 -38.53952 -36.00714 -35.03657 -33.60608 -30.79613 -29.97813 -28.76600 -25.57617 -24.11238 -22.81014 -21.53878 -21.05916 -18.28505 -17.38201 -16.88343 -16.01492 -15.42398 -15.15943 -14.89920 -14.29338 -13.86769 -13.58144 -13.46398 -13.12884 -12.36356 -12.25763 -12.05999 -11.75482 -11.54522 -11.30209 -11.12207 -10.99410 -10.56371 -10.50869 -9.99136 -9.73913 -9.55200 -9.30164 -9.03401 -8.87697 -7.79775 -7.51001 -6.61921 -4.72108 0.91566 1.37152 1.50228 2.09360 2.77572 3.02413 3.09612 3.14448 3.15668 3.31617 3.97987 4.06164 4.74023 4.86124 4.99171 5.12922 5.42023 5.56167 5.74622 5.87152 5.96109 6.09683 6.30721 6.35456 6.51488 6.54985 6.84182 6.93042 7.23020 7.47104 7.60403 8.19629 8.44612 8.96703 10.45412 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.005150 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.002276 B = 5435.661228 C = 5805.932557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.924 3.076 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.209 3.791 10 H 0.054 0.946 11 C -0.048 4.048 12 Cl -0.224 7.224 13 O -0.261 6.261 14 C 0.344 3.656 15 N -0.520 5.520 16 C 0.125 3.875 17 C -0.085 4.085 18 C -0.107 4.107 19 C -0.130 4.130 20 C -0.061 4.061 21 C -0.207 4.207 22 S 0.058 5.942 23 H 0.276 0.724 24 H 0.142 0.858 25 H 0.083 0.917 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -10.512 3.045 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.102 0.898 9 C 0.154 3.846 10 H 0.071 0.929 11 C -0.111 4.111 12 Cl -0.198 7.198 13 O -0.166 6.166 14 C 0.023 3.977 15 N -0.252 5.252 16 C 0.004 3.996 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.151 4.151 20 C -0.084 4.084 21 C -0.326 4.326 22 S 0.309 5.691 23 H 0.086 0.914 24 H 0.160 0.840 25 H 0.102 0.898 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.606 -9.573 2.779 10.097 hybrid contribution 0.474 0.160 0.017 0.500 sum -1.132 -9.412 2.796 9.884 Atomic orbital electron populations 1.69782 1.06068 1.28640 1.47579 1.25002 0.95290 1.00006 0.93421 0.86050 0.79661 0.80608 0.78756 1.19892 1.20538 1.19155 1.20913 0.94646 0.86867 1.53984 0.89833 1.21008 0.86933 0.82208 0.94461 0.92898 1.25902 0.95720 0.87730 1.01719 1.98675 1.76029 1.47138 1.97985 1.86000 1.44153 1.17586 1.68864 1.25670 0.89743 0.90113 0.92136 1.65931 1.34781 0.98960 1.25527 1.18836 0.90391 0.93267 0.97079 1.20559 1.00212 0.89909 0.99852 1.20804 0.94823 0.98765 0.98474 1.20933 0.95874 0.96385 1.01927 1.20239 0.99060 0.91709 0.97381 1.23876 0.99563 1.00352 1.08779 1.85861 1.19532 1.07167 1.56555 0.91373 0.84012 0.89842 0.85273 0.85424 0.85499 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.02 11.29 55.43 0.63 -21.39 15 2 C 0.07 1.64 5.29 -17.82 -0.09 1.55 15 3 Si 0.92 19.16 29.54 -169.99 -5.02 14.14 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.53 -13.27 8.89 -34.44 -0.31 -13.58 15 8 H 0.08 2.12 7.81 -52.49 -0.41 1.71 15 9 C 0.21 5.00 2.24 -27.88 -0.06 4.94 15 10 H 0.05 1.33 6.57 -51.93 -0.34 0.98 15 11 C -0.05 -1.05 6.17 37.16 0.23 -0.82 15 12 Cl -0.22 -4.57 24.74 -51.86 -1.28 -5.85 15 13 O -0.26 -6.21 9.81 -17.67 -0.17 -6.39 15 14 C 0.34 7.63 7.58 51.44 0.39 8.02 15 15 N -0.52 -11.24 10.60 -11.85 -0.13 -11.36 15 16 C 0.12 2.34 6.94 -84.89 -0.59 1.75 15 17 C -0.08 -1.26 10.10 -38.88 -0.39 -1.66 15 18 C -0.11 -1.28 9.99 -39.78 -0.40 -1.68 15 19 C -0.13 -1.54 10.05 -39.60 -0.40 -1.94 15 20 C -0.06 -0.87 10.06 -39.39 -0.40 -1.27 15 21 C -0.21 -3.70 6.52 -38.61 -0.25 -3.95 15 22 S 0.06 1.15 18.12 -107.50 -1.95 -0.80 15 23 H 0.28 6.49 8.31 -40.82 -0.34 6.15 15 24 H 0.14 3.30 5.95 -51.93 -0.31 2.99 15 25 H 0.08 1.78 8.14 -51.93 -0.42 1.36 15 26 H 0.13 1.71 8.06 -52.49 -0.42 1.28 15 27 H 0.13 1.09 8.06 -52.49 -0.42 0.67 15 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 15 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -26.60 278.25 -8.31 -34.91 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.31 Total: 1.19 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.27 Total: -8.64 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.50 Total: -32.76 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.17 Total: -6.39 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.95 Total: -0.80 kcal Atomic # 17 Polarization: -4.57 SS G_CDS: -1.28 Total: -5.85 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.60 -8.31 -34.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225692978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.213 kcal (2) G-P(sol) polarization free energy of solvation -26.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds