Wall clock time and date at job start Tue Mar 31 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47059 * 269.99905 * 3 2 1 5 5 H 1.48500 * 109.46860 * 30.00056 * 3 2 1 6 6 H 1.48508 * 109.46939 * 149.99807 * 3 2 1 7 7 C 1.37882 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99293 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47351 * 299.99811 * 9 7 2 11 11 C 1.53000 * 109.46956 * 60.00126 * 9 7 2 12 12 Cl 1.80305 * 109.46915 * 184.99621 * 11 9 7 13 13 O 1.42906 * 109.46752 * 179.97438 * 9 7 2 14 14 C 1.35873 * 116.99776 * 150.00286 * 13 9 7 15 15 N 1.29004 * 121.15889 * 359.97096 * 14 13 9 16 16 S 1.69368 * 108.99888 * 180.02562 * 15 14 13 17 17 C 1.76503 * 96.19280 * 0.02562 * 16 15 14 18 18 C 1.38815 * 133.49879 * 179.97438 * 17 16 15 19 19 C 1.36721 * 119.75354 * 180.02562 * 18 17 16 20 20 C 1.38961 * 120.14041 * 0.02562 * 19 18 17 21 21 C 1.36080 * 121.14308 * 0.02562 * 20 19 18 22 22 C 1.40756 * 105.58966 * 0.02562 * 17 16 15 23 23 H 0.97004 * 119.99551 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47133 * 304.99267 * 11 9 7 25 25 H 1.09001 * 109.47544 * 65.00052 * 11 9 7 26 26 H 1.07997 * 120.12357 * 0.04703 * 18 17 16 27 27 H 1.08003 * 119.93099 * 180.02562 * 19 18 17 28 28 H 1.08000 * 119.42854 * 179.97438 * 20 19 18 29 29 H 1.08001 * 119.88998 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2491 12 17 -0.6387 -4.0719 -1.1769 13 8 2.1796 -3.5853 0.0005 14 6 1.7835 -4.7355 0.6058 15 7 0.6200 -4.8347 1.1542 16 16 0.4507 -6.3866 1.8112 17 6 2.0453 -6.9716 1.3313 18 6 2.7087 -8.1799 1.4945 19 6 3.9732 -8.3323 0.9973 20 6 4.5925 -7.2815 0.3316 21 6 3.9621 -6.0877 0.1605 22 6 2.6565 -5.8960 0.6599 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2756 -1.7048 -1.2954 25 1 1.0039 -2.6124 -2.1366 26 1 2.2277 -8.9968 2.0119 27 1 4.4919 -9.2713 1.1223 28 1 5.5917 -7.4142 -0.0562 29 1 4.4623 -5.2847 -0.3605 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226433193.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:37 Heat of formation + Delta-G solvation = 2.733563 kcal Electronic energy + Delta-G solvation = -17386.843600 eV Core-core repulsion = 14427.539017 eV Total energy + Delta-G solvation = -2959.304583 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.85097 -38.18606 -35.19047 -34.50633 -33.25813 -31.03085 -30.20665 -29.38005 -25.34215 -23.97311 -22.80720 -21.59378 -20.20461 -18.28630 -16.88706 -16.69191 -15.97735 -15.14553 -15.07854 -14.83327 -14.42618 -13.88825 -13.44701 -13.28522 -12.90759 -12.15156 -12.04970 -11.71579 -11.57307 -11.43757 -11.15125 -10.99289 -10.69866 -10.49528 -10.33196 -10.13686 -9.68403 -9.47641 -9.31143 -8.95065 -8.70953 -8.62566 -7.23182 -6.42403 -4.51690 0.79192 1.30312 1.76837 2.30945 2.72342 3.12625 3.19751 3.23686 3.48985 3.75531 3.76674 4.20098 4.67226 4.91434 4.92646 5.06457 5.34806 5.48601 5.55974 5.95850 6.14448 6.24588 6.27283 6.32448 6.43232 6.70064 6.82434 7.01817 7.22470 7.51348 7.76023 8.10875 8.60880 9.15294 10.64470 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.005757 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.077926 B = 4862.823356 C = 5535.778313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.076 0.924 9 C 0.213 3.787 10 H 0.064 0.936 11 C -0.035 4.035 12 Cl -0.231 7.231 13 O -0.291 6.291 14 C 0.350 3.650 15 N -0.473 5.473 16 S 0.173 5.827 17 C -0.125 4.125 18 C -0.090 4.090 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.034 4.034 22 C -0.120 4.120 23 H 0.272 0.728 24 H 0.133 0.867 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -12.845 0.799 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.094 0.906 9 C 0.158 3.842 10 H 0.081 0.919 11 C -0.097 4.097 12 Cl -0.205 7.205 13 O -0.195 6.195 14 C 0.127 3.873 15 N -0.307 5.307 16 S 0.321 5.679 17 C -0.245 4.245 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.160 4.160 21 C -0.056 4.056 22 C -0.133 4.133 23 H 0.082 0.918 24 H 0.151 0.849 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.885 -12.387 1.469 13.065 hybrid contribution 1.653 0.959 -0.795 2.070 sum 5.538 -11.428 0.674 12.717 Atomic orbital electron populations 1.69827 1.06003 1.28060 1.48212 1.24977 0.95185 0.99770 0.93949 0.86160 0.79636 0.81296 0.78507 1.20124 1.20718 1.19387 1.20984 0.94259 0.87811 1.53348 0.90577 1.20597 0.87130 0.81469 0.95010 0.91873 1.25610 0.95548 0.87322 1.01269 1.98647 1.75559 1.47357 1.98952 1.86314 1.44934 1.18669 1.69605 1.21331 0.87598 0.88213 0.90178 1.76219 1.19066 1.12436 1.22964 1.84595 1.13336 1.06698 1.63313 1.23475 1.00772 0.97707 1.02536 1.19922 0.94972 0.94726 1.01699 1.20985 0.94363 0.98899 0.96426 1.20694 1.00662 0.93192 1.01408 1.20759 0.91545 0.97608 0.95656 1.19443 0.96943 0.91485 1.05396 0.91772 0.84896 0.91121 0.85139 0.85171 0.85333 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.70 11.29 55.43 0.63 -23.08 15 2 C 0.06 1.68 5.29 -17.82 -0.09 1.59 15 3 Si 0.92 20.06 29.54 -169.99 -5.02 15.04 15 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.53 -13.93 8.89 -34.44 -0.31 -14.24 15 8 H 0.08 1.99 7.81 -52.49 -0.41 1.58 15 9 C 0.21 5.42 2.26 -27.88 -0.06 5.35 15 10 H 0.06 1.78 7.07 -51.93 -0.37 1.41 15 11 C -0.03 -0.83 6.17 37.16 0.23 -0.60 15 12 Cl -0.23 -5.20 25.99 -51.86 -1.35 -6.55 15 13 O -0.29 -6.88 9.79 -19.34 -0.19 -7.07 15 14 C 0.35 7.52 6.76 -15.92 -0.11 7.41 15 15 N -0.47 -10.36 8.13 30.94 0.25 -10.11 15 16 S 0.17 3.04 23.85 -107.50 -2.56 0.47 15 17 C -0.12 -1.99 6.70 -38.42 -0.26 -2.25 15 18 C -0.09 -1.10 10.02 -39.92 -0.40 -1.50 15 19 C -0.08 -0.88 10.01 -39.86 -0.40 -1.28 15 20 C -0.14 -1.57 9.92 -40.09 -0.40 -1.97 15 21 C -0.03 -0.50 10.05 -39.27 -0.39 -0.89 15 22 C -0.12 -2.15 6.12 -105.05 -0.64 -2.79 15 23 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 24 H 0.13 3.41 5.95 -51.93 -0.31 3.10 15 25 H 0.07 1.62 8.14 -51.93 -0.42 1.20 15 26 H 0.13 1.24 8.06 -52.49 -0.42 0.81 15 27 H 0.13 0.90 8.06 -52.48 -0.42 0.48 15 28 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 29 H 0.14 1.87 8.06 -52.49 -0.42 1.44 15 LS Contribution 281.62 15.07 4.24 4.24 Total: -1.00 -28.48 281.62 -9.17 -37.65 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -2.34 Total: 0.55 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.83 Total: -11.16 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.88 Total: -33.19 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.19 Total: -7.07 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.56 Total: 0.47 kcal Atomic # 17 Polarization: -5.20 SS G_CDS: -1.35 Total: -6.55 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.48 -9.17 -37.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226433193.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.383 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds