Wall clock time and date at job start Tue Mar 31 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99494 * 2 1 4 4 H 1.48508 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47192 * 300.00059 * 3 2 1 6 6 H 1.48500 * 109.46998 * 60.00530 * 3 2 1 7 7 C 1.37872 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00455 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.46845 * 300.00032 * 9 7 2 11 11 C 1.52999 * 109.47174 * 59.99913 * 9 7 2 12 12 Cl 1.80303 * 109.47059 * 185.00346 * 11 9 7 13 13 O 1.42895 * 109.47433 * 180.02562 * 9 7 2 14 14 C 1.35960 * 117.00237 * 141.72459 * 13 9 7 15 15 C 1.39240 * 120.06096 * 185.30753 * 14 13 9 16 16 C 1.36048 * 120.72318 * 179.75865 * 15 14 13 17 17 C 1.41172 * 120.62541 * 0.51955 * 16 15 14 18 18 N 1.34755 * 128.81690 * 179.76301 * 17 16 15 19 19 C 1.28021 * 118.11494 * 179.97438 * 18 17 16 20 20 S 1.75820 * 110.43491 * 0.02562 * 19 18 17 21 21 C 1.39841 * 118.41403 * 359.73790 * 17 16 15 22 22 C 1.38066 * 120.06088 * 5.57917 * 14 13 9 23 23 H 0.96996 * 120.00492 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47256 * 305.00169 * 11 9 7 25 25 H 1.08998 * 109.46999 * 65.00624 * 11 9 7 26 26 H 1.07995 * 119.63751 * 0.02562 * 15 14 13 27 27 H 1.08001 * 119.68770 * 180.23889 * 16 15 14 28 28 H 1.07999 * 124.78191 * 180.02562 * 19 18 17 29 29 H 1.07996 * 120.01477 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8898 11 6 0.3711 -2.5799 -1.2494 12 17 -0.6394 -4.0715 -1.1771 13 8 2.1798 -3.5852 -0.0005 14 6 1.8581 -4.6724 0.7499 15 6 2.7654 -5.7199 0.8848 16 6 2.4595 -6.8119 1.6364 17 6 1.2103 -6.9105 2.2866 18 7 0.7368 -7.9073 3.0598 19 6 -0.4382 -7.7825 3.5526 20 16 -1.1534 -6.2553 3.0553 21 6 0.3007 -5.8579 2.1434 22 6 0.6290 -4.7422 1.3748 23 1 -0.4851 0.8400 0.0004 24 1 -0.2765 -1.7043 -1.2949 25 1 1.0024 -2.6115 -2.1374 26 1 3.7242 -5.6630 0.3910 27 1 3.1773 -7.6131 1.7328 28 1 -0.9219 -8.5125 4.1848 29 1 -0.0783 -3.9332 1.2677 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226641629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:30 Heat of formation + Delta-G solvation = 5.948868 kcal Electronic energy + Delta-G solvation = -17381.183601 eV Core-core repulsion = 14422.018444 eV Total energy + Delta-G solvation = -2959.165157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15309 -38.48116 -35.67594 -34.85374 -33.46381 -30.83995 -29.85024 -28.34581 -25.43801 -24.35316 -23.33531 -21.32812 -20.48068 -18.56658 -17.06031 -16.83408 -16.14028 -15.28707 -14.92981 -14.76229 -14.12609 -14.00624 -13.76684 -13.18317 -13.01551 -12.60197 -12.35136 -12.15203 -11.75061 -11.42921 -11.21339 -11.01904 -10.70274 -10.53874 -10.31642 -9.88240 -9.73316 -9.54690 -9.39346 -9.18094 -8.76863 -8.06281 -7.35518 -6.51812 -4.60389 0.79451 1.47588 1.54322 1.98162 2.69473 3.06177 3.16212 3.21187 3.30423 3.89346 4.03846 4.20982 4.25377 4.84652 4.96628 5.29198 5.43933 5.64551 5.76019 5.97107 6.10062 6.15196 6.34977 6.39460 6.51002 6.77168 6.87001 7.03898 7.45642 7.64841 7.78599 8.13381 8.55451 9.08004 10.55157 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.005294 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.080859 B = 5287.969670 C = 5453.176802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.203 3.797 10 H 0.053 0.947 11 C -0.036 4.036 12 Cl -0.240 7.240 13 O -0.300 6.300 14 C 0.183 3.817 15 C -0.142 4.142 16 C -0.030 4.030 17 C 0.012 3.988 18 N -0.450 5.450 19 C 0.070 3.930 20 S 0.022 5.978 21 C -0.109 4.109 22 C -0.167 4.167 23 H 0.273 0.727 24 H 0.136 0.864 25 H 0.077 0.923 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.201 0.799 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 -9.200 3.220 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.097 0.903 9 C 0.148 3.852 10 H 0.070 0.930 11 C -0.098 4.098 12 Cl -0.214 7.214 13 O -0.213 6.213 14 C 0.132 3.868 15 C -0.163 4.163 16 C -0.051 4.051 17 C -0.106 4.106 18 N -0.160 5.160 19 C -0.236 4.236 20 S 0.272 5.728 21 C -0.227 4.227 22 C -0.192 4.192 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.095 0.905 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.218 0.782 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.202 -9.180 3.434 9.875 hybrid contribution 0.672 0.910 -0.360 1.187 sum -0.530 -8.270 3.074 8.838 Atomic orbital electron populations 1.69794 1.06027 1.28161 1.48478 1.24994 0.95206 0.99930 0.93799 0.86109 0.80011 0.81515 0.78028 1.19212 1.20455 1.20444 1.21079 0.94453 0.87775 1.52915 0.90334 1.20649 0.87412 0.82826 0.94315 0.92986 1.25760 0.95423 0.86792 1.01843 1.98651 1.75830 1.48005 1.98930 1.86176 1.49107 1.24084 1.61908 1.18980 0.91355 0.87983 0.88524 1.20056 1.00419 0.92958 1.02852 1.20101 0.93281 0.97372 0.94350 1.19034 0.97356 0.90605 1.03618 1.66059 1.12659 1.27804 1.09501 1.28636 0.93082 0.98799 1.03103 1.85013 1.18424 1.19761 1.49565 1.23248 0.96778 0.99672 1.03027 1.20669 0.98309 0.98728 1.01461 0.91724 0.84663 0.90452 0.84244 0.84745 0.78217 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.47 11.29 55.43 0.63 -21.84 15 2 C 0.06 1.59 5.29 -17.82 -0.09 1.49 15 3 Si 0.92 19.37 29.54 -169.99 -5.02 14.35 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.52 -13.18 8.89 -34.45 -0.31 -13.49 15 8 H 0.08 1.98 7.81 -52.48 -0.41 1.57 15 9 C 0.20 4.74 2.15 -27.89 -0.06 4.68 15 10 H 0.05 1.30 5.49 -51.92 -0.28 1.01 15 11 C -0.04 -0.78 6.17 37.16 0.23 -0.56 15 12 Cl -0.24 -4.87 25.67 -51.86 -1.33 -6.21 15 13 O -0.30 -6.60 9.69 -19.61 -0.19 -6.79 15 14 C 0.18 3.61 6.22 -39.27 -0.24 3.37 15 15 C -0.14 -2.36 9.88 -40.00 -0.40 -2.76 15 16 C -0.03 -0.47 10.04 -39.25 -0.39 -0.87 15 17 C 0.01 0.20 6.95 -84.87 -0.59 -0.39 15 18 N -0.45 -7.14 10.56 -11.58 -0.12 -7.26 15 19 C 0.07 0.92 12.41 51.17 0.63 1.55 15 20 S 0.02 0.33 23.39 -107.50 -2.51 -2.19 15 21 C -0.11 -1.97 6.53 -38.55 -0.25 -2.23 15 22 C -0.17 -3.30 7.23 -39.21 -0.28 -3.59 15 23 H 0.27 6.54 8.31 -40.82 -0.34 6.20 15 24 H 0.14 3.20 5.95 -51.93 -0.31 2.89 15 25 H 0.08 1.65 8.14 -51.93 -0.42 1.22 15 26 H 0.14 1.98 8.06 -52.49 -0.42 1.55 15 27 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.20 1.67 8.06 -52.49 -0.42 1.25 15 29 H 0.15 3.14 4.81 -52.49 -0.25 2.89 15 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -26.58 277.91 -8.20 -34.78 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.08 Total: 3.74 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.75 Total: -12.78 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.50 Total: -29.10 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.19 Total: -6.79 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.51 Total: -2.19 kcal Atomic # 17 Polarization: -4.87 SS G_CDS: -1.33 Total: -6.21 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.58 -8.20 -34.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226641629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.728 kcal (2) G-P(sol) polarization free energy of solvation -26.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds