Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48496 * 109.47287 * 239.99906 * 3 2 1 5 5 H 1.48496 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46884 * 120.00363 * 3 2 1 7 7 C 1.37877 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00328 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47279 * 300.00203 * 9 7 2 11 11 C 1.53004 * 109.47404 * 59.99613 * 9 7 2 12 12 Cl 1.80291 * 109.47426 * 185.00475 * 11 9 7 13 13 O 1.42895 * 109.47684 * 179.97438 * 9 7 2 14 14 C 1.35438 * 117.00362 * 149.99668 * 13 9 7 15 15 N 1.32763 * 120.77193 * 0.02562 * 14 13 9 16 16 C 1.32576 * 121.02416 * 180.02562 * 15 14 13 17 17 O 1.35489 * 118.73674 * 179.97438 * 16 15 14 18 18 N 1.32063 * 122.52886 * 0.25617 * 16 15 14 19 19 C 1.33169 * 120.61706 * 359.48445 * 18 16 15 20 20 N 1.36769 * 134.24037 * 180.19144 * 19 18 16 21 21 H 0.97006 * 124.98801 * 0.28384 * 20 19 18 22 22 C 1.37211 * 110.02351 * 180.27734 * 20 19 18 23 23 C 1.34235 * 109.81712 * 0.02562 * 22 20 19 24 24 C 1.40098 * 120.77786 * 180.02562 * 14 13 9 25 25 H 0.97004 * 119.99918 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46906 * 305.00854 * 11 9 7 27 27 H 1.09008 * 109.46586 * 65.00153 * 11 9 7 28 28 H 0.96700 * 114.00200 * 90.00060 * 17 16 15 29 29 H 1.07997 * 125.09749 * 179.97438 * 22 20 19 30 30 H 1.08000 * 126.59328 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6239 -2.5576 0.8880 11 6 0.3717 -2.5795 -1.2513 12 17 -0.6388 -4.0709 -1.1804 13 8 2.1795 -3.5854 -0.0027 14 6 1.7847 -4.7324 0.5997 15 7 0.5852 -4.8269 1.1608 16 6 0.1939 -5.9470 1.7522 17 8 -1.0399 -5.9923 2.3105 18 7 0.9624 -7.0187 1.8230 19 6 2.1797 -7.0171 1.2831 20 7 3.1833 -7.9417 1.1895 21 1 3.1436 -8.8435 1.5448 22 6 4.2542 -7.4064 0.5192 23 6 3.9826 -6.1406 0.1645 24 6 2.6326 -5.8467 0.6453 25 1 -0.4850 0.8401 0.0004 26 1 -0.2757 -1.7037 -1.2969 27 1 1.0038 -2.6106 -2.1389 28 1 -1.7337 -6.2921 1.7074 29 1 5.1777 -7.9254 0.3092 30 1 4.6351 -5.4684 -0.3729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227270553.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = 5.298568 kcal Electronic energy + Delta-G solvation = -19994.705321 eV Core-core repulsion = 16625.051845 eV Total energy + Delta-G solvation = -3369.653476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53784 -39.05673 -38.11307 -35.90403 -34.73647 -33.53537 -32.38581 -30.78060 -29.48243 -28.19007 -25.31769 -23.81947 -23.00905 -21.16830 -20.46418 -19.25210 -18.43118 -17.10806 -16.71218 -16.12931 -15.56691 -14.88825 -14.74787 -14.37068 -14.12324 -13.50890 -13.29093 -13.10424 -12.95578 -12.12652 -11.99690 -11.73363 -11.50203 -11.16969 -11.07700 -10.81837 -10.58179 -10.31559 -10.06323 -9.53461 -9.34710 -8.88305 -8.82630 -8.69400 -8.50655 -7.58179 -6.38788 -4.47828 1.22320 1.76230 2.66253 2.80294 3.17006 3.22255 3.24398 3.49450 3.69369 3.81733 4.24984 4.28115 4.77997 4.95635 4.98072 5.15598 5.42661 5.69191 5.82773 6.21352 6.30229 6.36648 6.51553 6.86388 6.97242 7.12319 7.25469 7.51393 7.53637 7.77674 7.88390 8.17225 8.57129 8.69090 9.18859 10.68010 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.006125 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.647623 B = 4570.174391 C = 5274.130037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.208 3.792 10 H 0.071 0.929 11 C -0.029 4.029 12 Cl -0.237 7.237 13 O -0.286 6.286 14 C 0.455 3.545 15 N -0.567 5.567 16 C 0.551 3.449 17 O -0.457 6.457 18 N -0.581 5.581 19 C 0.355 3.645 20 N -0.573 5.573 21 H 0.419 0.581 22 C 0.022 3.978 23 C -0.139 4.139 24 C -0.247 4.247 25 H 0.272 0.728 26 H 0.134 0.866 27 H 0.070 0.930 28 H 0.406 0.594 29 H 0.179 0.821 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -12.024 -0.893 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.093 0.907 9 C 0.154 3.846 10 H 0.089 0.911 11 C -0.092 4.092 12 Cl -0.211 7.211 13 O -0.187 6.187 14 C 0.263 3.737 15 N -0.311 5.311 16 C 0.244 3.756 17 O -0.259 6.259 18 N -0.320 5.320 19 C 0.116 3.884 20 N -0.182 5.182 21 H 0.256 0.744 22 C -0.101 4.101 23 C -0.166 4.166 24 C -0.258 4.258 25 H 0.083 0.917 26 H 0.152 0.848 27 H 0.088 0.912 28 H 0.265 0.735 29 H 0.196 0.804 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.973 -11.812 -0.093 12.463 hybrid contribution 0.478 0.298 -0.552 0.788 sum 4.451 -11.514 -0.645 12.361 Atomic orbital electron populations 1.69813 1.05959 1.28123 1.48165 1.24955 0.95175 0.99697 0.93972 0.86232 0.79297 0.81048 0.79099 1.19752 1.20831 1.19741 1.20954 0.94229 0.87878 1.53449 0.90650 1.20653 0.87207 0.81269 0.95478 0.91088 1.25596 0.95388 0.87011 1.01165 1.98624 1.75669 1.47781 1.99026 1.86307 1.44995 1.19275 1.68093 1.19308 0.85198 0.85983 0.83198 1.67989 1.17297 1.28153 1.17668 1.19254 0.86909 0.82721 0.86700 1.84681 1.13652 1.88559 1.39018 1.66613 1.05202 1.31732 1.28487 1.17576 0.88020 0.88058 0.94772 1.41375 1.11929 1.13942 1.50941 0.74369 1.21779 0.92059 0.95181 1.01125 1.21584 0.94440 0.95689 1.04864 1.19523 0.98801 0.94564 1.12898 0.91746 0.84844 0.91184 0.73543 0.80440 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.43 11.29 55.43 0.63 -22.81 16 2 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 3 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.53 -13.85 8.89 -34.44 -0.31 -14.15 16 8 H 0.08 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.21 5.23 2.26 -27.88 -0.06 5.17 16 10 H 0.07 1.97 7.03 -51.93 -0.37 1.61 16 11 C -0.03 -0.67 6.17 37.16 0.23 -0.44 16 12 Cl -0.24 -5.06 25.93 -51.86 -1.34 -6.41 16 13 O -0.29 -6.70 9.75 -18.01 -0.18 -6.88 16 14 C 0.46 9.88 6.70 -16.45 -0.11 9.77 16 15 N -0.57 -12.35 6.61 -14.61 -0.10 -12.45 16 16 C 0.55 10.81 8.67 -91.25 -0.79 10.02 16 17 O -0.46 -7.81 13.64 -18.16 -0.25 -8.06 16 18 N -0.58 -10.74 10.50 -14.03 -0.15 -10.88 16 19 C 0.35 6.07 8.48 -155.87 -1.32 4.75 16 20 N -0.57 -6.97 6.04 -12.12 -0.07 -7.05 16 21 H 0.42 3.66 8.96 -40.82 -0.37 3.30 16 22 C 0.02 0.23 11.83 -16.56 -0.20 0.04 16 23 C -0.14 -2.02 11.09 -37.76 -0.42 -2.44 16 24 C -0.25 -4.62 6.39 -105.01 -0.67 -5.29 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.13 3.34 5.95 -51.93 -0.31 3.03 16 27 H 0.07 1.57 8.14 -51.92 -0.42 1.14 16 28 H 0.41 4.91 9.06 45.56 0.41 5.32 16 29 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 281.76 15.07 4.25 4.25 Total: -1.00 -30.83 281.76 -7.42 -38.25 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -1.44 Total: 8.08 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -3.74 Total: 9.01 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.31 Total: -53.19 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.42 Total: -14.94 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 17 Polarization: -5.06 SS G_CDS: -1.34 Total: -6.41 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.83 -7.42 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227270553.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.545 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds