Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99797 * 2 1 4 4 H 1.48507 * 109.47322 * 264.86831 * 3 2 1 5 5 H 1.48500 * 109.47684 * 24.87270 * 3 2 1 6 6 H 1.48508 * 109.46813 * 144.87350 * 3 2 1 7 7 C 1.37872 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00321 * 3.81581 * 7 2 1 9 9 C 1.50704 * 119.99850 * 183.81989 * 7 2 1 10 10 H 1.09009 * 109.46919 * 334.93847 * 9 7 2 11 11 C 1.53002 * 109.47031 * 94.93442 * 9 7 2 12 12 Cl 1.80302 * 109.46733 * 185.51949 * 11 9 7 13 13 O 1.42897 * 109.47228 * 214.93633 * 9 7 2 14 14 C 1.35909 * 116.99924 * 141.34092 * 13 9 7 15 15 C 1.37711 * 119.89474 * 5.77095 * 14 13 9 16 16 C 1.38713 * 120.56515 * 179.76503 * 15 14 13 17 17 C 1.37656 * 120.11771 * 0.49255 * 16 15 14 18 18 C 1.39396 * 120.21066 * 359.76937 * 17 16 15 19 19 S 1.76112 * 131.63232 * 179.97438 * 18 17 16 20 20 C 1.70644 * 90.82726 * 180.02562 * 19 18 17 21 21 N 1.27882 * 111.51706 * 0.02562 * 20 19 18 22 22 C 1.34704 * 117.83334 * 359.97438 * 21 20 19 23 23 H 0.97000 * 120.00120 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46964 * 305.51969 * 11 9 7 25 25 H 1.08996 * 109.47134 * 65.52319 * 11 9 7 26 26 H 1.08002 * 119.71616 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.94226 * 180.26138 * 16 15 14 28 28 H 1.08004 * 119.89038 * 179.78866 * 17 16 15 29 29 H 1.08007 * 124.24182 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6051 1.9838 -1.3945 5 1 1.3967 2.6816 0.5889 6 1 3.4884 1.4738 0.8056 7 6 2.0045 -1.1941 -0.0005 8 1 1.4663 -2.1283 -0.0632 9 6 3.5090 -1.1956 0.0864 10 1 3.8960 -0.2508 -0.2956 11 6 3.9354 -1.3687 1.5456 12 17 5.7268 -1.2085 1.6713 13 8 4.0301 -2.2739 -0.6932 14 6 5.1699 -2.0343 -1.3936 15 6 5.8322 -0.8370 -1.2381 16 6 6.9993 -0.5798 -1.9424 17 6 7.5014 -1.5196 -2.8140 18 6 6.8431 -2.7357 -2.9898 19 16 7.2078 -4.1274 -4.0056 20 6 5.8203 -4.9396 -3.4336 21 7 5.1783 -4.2306 -2.5848 22 6 5.6681 -3.0122 -2.2844 23 1 -0.4850 0.8400 0.0004 24 1 3.4583 -0.6025 2.1568 25 1 3.6332 -2.3549 1.8979 26 1 5.4415 -0.0933 -0.5594 27 1 7.5128 0.3609 -1.8095 28 1 8.4084 -1.3141 -3.3630 29 1 5.5218 -5.9285 -3.7489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227952194.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = 12.428636 kcal Electronic energy + Delta-G solvation = -17610.445157 eV Core-core repulsion = 14651.560983 eV Total energy + Delta-G solvation = -2958.884174 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34033 -38.28550 -36.10427 -35.24135 -33.32248 -30.86098 -29.90442 -28.95838 -25.43849 -24.78444 -23.05384 -21.55889 -20.53099 -18.75099 -17.30035 -16.78804 -16.18585 -15.39230 -15.23218 -14.88157 -14.49104 -14.02756 -13.87865 -13.33356 -13.16781 -12.88212 -12.40143 -12.27332 -11.79091 -11.47508 -11.30040 -11.16326 -10.95309 -10.84984 -10.16780 -10.03295 -9.78548 -9.47242 -9.40167 -9.10602 -8.94908 -8.52053 -7.27001 -6.51263 -4.59390 0.70913 1.44692 1.50629 1.88162 2.63642 2.87176 3.03697 3.07550 3.11848 3.84812 3.98830 4.01699 4.24213 4.82320 5.01600 5.16135 5.28041 5.48216 5.55275 5.66990 5.81734 5.83773 6.01205 6.28388 6.36231 6.54142 6.60596 6.85265 7.07967 7.66609 7.92940 8.26971 8.63534 9.04232 10.59225 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.006222 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.267866 B = 4498.837578 C = 4843.571031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.088 3.912 3 Si 0.860 3.140 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.171 3.829 10 H 0.053 0.947 11 C -0.037 4.037 12 Cl -0.229 7.229 13 O -0.281 6.281 14 C 0.223 3.777 15 C -0.215 4.215 16 C -0.047 4.047 17 C -0.139 4.139 18 C -0.133 4.133 19 S 0.061 5.939 20 C 0.042 3.958 21 N -0.428 5.428 22 C 0.034 3.966 23 H 0.275 0.725 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.782 -2.405 -4.387 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.120 4.120 3 Si 0.685 3.315 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.561 4.561 8 H 0.110 0.890 9 C 0.116 3.884 10 H 0.070 0.930 11 C -0.099 4.099 12 Cl -0.203 7.203 13 O -0.192 6.192 14 C 0.172 3.828 15 C -0.237 4.237 16 C -0.068 4.068 17 C -0.163 4.163 18 C -0.251 4.251 19 S 0.313 5.687 20 C -0.264 4.264 21 N -0.138 5.138 22 C -0.085 4.085 23 H 0.085 0.915 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.162 0.838 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 13.783 -3.034 -4.805 14.908 hybrid contribution -0.025 1.568 0.699 1.717 sum 13.757 -1.466 -4.107 14.432 Atomic orbital electron populations 1.69834 1.06186 1.28083 1.46050 1.24964 0.94925 0.98836 0.93228 0.87093 0.80757 0.83665 0.80022 1.18908 1.20081 1.18184 1.20717 0.86271 0.96128 1.53018 0.88981 1.20997 0.95504 0.86422 0.85470 0.92977 1.25961 0.76598 1.05409 1.01975 1.98671 1.24175 1.98721 1.98737 1.86414 1.34604 1.41448 1.56709 1.18616 0.86212 0.90344 0.87676 1.21253 0.98776 0.97982 1.05653 1.20853 0.94424 0.98190 0.93377 1.20008 1.01411 0.91910 1.02928 1.23478 0.99613 1.00044 1.02003 1.83681 1.30299 1.09170 1.45594 1.27874 0.95625 1.04278 0.98647 1.66076 1.30374 1.04216 1.13157 1.18314 0.95213 0.92507 1.02496 0.91497 0.88058 0.88552 0.83807 0.85025 0.85647 0.78419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 13.96 55.43 0.77 -23.53 15 2 C 0.09 2.31 5.47 -17.82 -0.10 2.21 15 3 Si 0.86 19.06 26.96 -169.99 -4.58 14.48 15 4 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.26 -5.30 6.86 56.52 0.39 -4.91 15 7 C -0.52 -13.91 9.24 -34.44 -0.32 -14.22 15 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 15 9 C 0.17 3.90 1.78 -27.88 -0.05 3.85 15 10 H 0.05 1.17 2.66 -51.92 -0.14 1.03 15 11 C -0.04 -0.73 6.32 37.16 0.23 -0.50 15 12 Cl -0.23 -4.18 25.73 -51.86 -1.33 -5.52 15 13 O -0.28 -6.59 9.70 -19.45 -0.19 -6.77 15 14 C 0.22 4.66 6.30 -38.59 -0.24 4.42 15 15 C -0.21 -3.94 7.19 -39.60 -0.28 -4.22 15 16 C -0.05 -0.70 10.04 -39.62 -0.40 -1.10 15 17 C -0.14 -2.01 10.06 -39.36 -0.40 -2.40 15 18 C -0.13 -2.18 6.55 -38.56 -0.25 -2.43 15 19 S 0.06 0.78 23.17 -107.50 -2.49 -1.71 15 20 C 0.04 0.59 12.10 51.12 0.62 1.21 15 21 N -0.43 -8.15 10.57 -12.90 -0.14 -8.28 15 22 C 0.03 0.66 6.94 -84.84 -0.59 0.07 15 23 H 0.27 7.12 8.31 -40.82 -0.34 6.79 15 24 H 0.10 1.94 8.14 -51.93 -0.42 1.52 15 25 H 0.10 1.88 8.14 -51.93 -0.42 1.46 15 26 H 0.14 2.68 4.74 -52.49 -0.25 2.43 15 27 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 28 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 29 H 0.20 1.96 8.06 -52.48 -0.42 1.53 15 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -29.45 277.37 -7.63 -37.08 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -2.07 Total: 3.19 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.78 Total: -13.11 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.64 Total: -31.81 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.19 Total: -6.77 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.58 Total: 14.48 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Atomic # 17 Polarization: -4.18 SS G_CDS: -1.33 Total: -5.52 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.45 -7.63 -37.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227952194.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.509 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds