Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30169 * 127.37606 * 2 1 4 4 O 1.20992 * 113.40057 * 180.02562 * 3 2 1 5 5 C 1.34062 * 112.98408 * 0.02562 * 4 3 2 6 6 N 1.32568 * 136.40531 * 179.97438 * 5 4 3 7 7 C 1.31744 * 120.61278 * 180.02562 * 6 5 4 8 8 N 1.32046 * 122.87214 * 359.71019 * 7 6 5 9 9 C 1.33064 * 120.93926 * 0.58570 * 8 7 6 10 10 O 1.35341 * 120.93632 * 179.71664 * 9 8 7 11 11 C 1.42899 * 116.99890 * 359.71709 * 10 9 8 12 12 H 1.08998 * 109.47157 * 30.00156 * 11 10 9 13 13 C 1.50705 * 109.47157 * 150.00212 * 11 10 9 14 14 H 1.08001 * 119.99576 * 95.12664 * 13 11 10 15 15 C 1.37874 * 119.99855 * 275.13097 * 13 11 10 16 16 N 1.31516 * 120.00152 * 355.99629 * 15 13 11 17 17 Si 1.86797 * 119.99837 * 175.72510 * 15 13 11 18 18 H 1.48497 * 109.47268 * 59.99755 * 17 15 13 19 19 H 1.48506 * 109.47309 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47322 * 299.99418 * 17 15 13 21 21 C 1.53003 * 109.47012 * 270.00140 * 11 10 9 22 22 Cl 1.80296 * 109.47057 * 65.72022 * 21 11 10 23 23 C 1.39507 * 118.12612 * 359.44028 * 9 8 7 24 24 H 1.09004 * 109.46810 * 269.99651 * 1 2 3 25 25 H 1.09005 * 109.47017 * 29.98937 * 1 2 3 26 26 H 1.08993 * 109.47562 * 149.99206 * 1 2 3 27 27 H 1.07997 * 118.56081 * 179.97438 * 7 6 5 28 28 H 0.96995 * 119.99948 * 5.30572 * 16 15 13 29 29 H 1.09007 * 109.46763 * 185.71945 * 21 11 10 30 30 H 1.08999 * 109.46917 * 305.71670 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2972 1.0344 0.0000 4 8 3.4713 0.7422 -0.0005 5 6 3.6812 -0.5819 -0.0015 6 7 4.7344 -1.3870 -0.0027 7 6 4.5788 -2.6952 -0.0040 8 7 3.3929 -3.2759 0.0016 9 6 2.2765 -2.5518 -0.0029 10 8 1.0611 -3.1470 -0.0029 11 6 1.0385 -4.5758 -0.0043 12 1 1.9228 -4.9537 0.5088 13 6 -0.1995 -5.0594 0.7061 14 1 -1.0863 -5.3036 0.1400 15 6 -0.2001 -5.1898 2.0786 16 7 0.9023 -4.9683 2.7607 17 14 -1.7686 -5.6739 2.9701 18 1 -2.2253 -7.0005 2.4835 19 1 -1.5061 -5.7463 4.4300 20 1 -2.8212 -4.6603 2.7058 21 6 1.0298 -5.0843 -1.4474 22 17 2.5861 -4.6494 -2.2472 23 6 2.3944 -1.1617 -0.0015 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3634 -0.8898 -0.5139 27 1 5.4597 -3.3200 -0.0054 28 1 1.6946 -4.6390 2.3083 29 1 0.9103 -6.1678 -1.4501 30 1 0.2024 -4.6261 -1.9891 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228303562.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = 49.423177 kcal Electronic energy + Delta-G solvation = -20338.014252 eV Core-core repulsion = 16970.274162 eV Total energy + Delta-G solvation = -3367.740090 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.48939 -40.27351 -37.99670 -35.29702 -34.51716 -33.62629 -32.68785 -31.00873 -29.83566 -28.59346 -25.29373 -24.86104 -24.16826 -21.98903 -20.85242 -18.49055 -18.32908 -17.65773 -17.47669 -17.08630 -15.33851 -14.88014 -14.71459 -14.06342 -13.97544 -13.66160 -13.37995 -13.29732 -13.10155 -12.64097 -12.40313 -12.22809 -11.77718 -11.58256 -11.10753 -10.70849 -10.56286 -10.40157 -10.34736 -9.86486 -9.71821 -9.56500 -9.32016 -9.03818 -8.80662 -8.28260 -6.93400 -4.80026 0.86665 1.31345 2.29243 2.48154 2.87617 3.14773 3.22161 3.40078 3.49484 3.99632 4.07130 4.15435 4.31080 4.52687 4.74466 4.87050 5.18940 5.37744 5.62046 5.65761 5.67519 5.69584 5.77247 5.99860 6.22413 6.33928 6.62299 7.03040 7.36503 7.83521 7.97383 8.20550 8.24630 8.44892 9.00916 10.43128 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.007370 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.236310 B = 3798.392891 C = 4618.007485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.106 3.894 3 N -0.343 5.343 4 O 0.074 5.926 5 C 0.274 3.726 6 N -0.540 5.540 7 C 0.377 3.623 8 N -0.560 5.560 9 C 0.462 3.538 10 O -0.287 6.287 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.596 4.596 14 H 0.068 0.932 15 C 0.037 3.963 16 N -0.866 5.866 17 Si 1.075 2.925 18 H -0.281 1.281 19 H -0.277 1.277 20 H -0.281 1.281 21 C -0.027 4.027 22 Cl -0.209 7.209 23 C -0.313 4.313 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.209 0.791 28 H 0.278 0.722 29 H 0.101 0.899 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 3.164 -5.272 6.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 N -0.057 5.057 4 O 0.024 5.976 5 C 0.085 3.915 6 N -0.273 5.273 7 C 0.088 3.912 8 N -0.294 5.294 9 C 0.271 3.729 10 O -0.187 6.187 11 C 0.121 3.879 12 H 0.095 0.905 13 C -0.632 4.632 14 H 0.086 0.914 15 C -0.174 4.174 16 N -0.499 5.499 17 Si 0.900 3.100 18 H -0.207 1.207 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.090 4.090 22 Cl -0.183 7.183 23 C -0.323 4.323 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.225 0.775 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.415 3.715 -3.854 5.369 hybrid contribution 0.160 0.007 -1.634 1.642 sum 0.575 3.723 -5.488 6.656 Atomic orbital electron populations 1.20284 0.84484 1.04288 1.04275 1.24153 0.98356 0.86300 0.97524 1.73563 0.88497 1.22652 1.20940 1.84815 1.20611 1.18904 1.73222 1.21583 0.89970 0.86390 0.93535 1.67339 1.31253 1.04279 1.24403 1.24858 0.94700 0.85867 0.85788 1.68694 0.98326 1.39171 1.23255 1.19727 0.87487 0.85930 0.79781 1.86919 1.21734 1.29098 1.80974 1.20968 1.01468 0.74431 0.91004 0.90473 1.21911 0.99334 1.47377 0.94590 0.91395 1.26250 1.03157 0.93134 0.94830 1.70794 1.01815 1.36855 1.40419 0.83455 0.73257 0.76837 0.76450 1.20656 1.20194 1.20638 1.25104 0.84761 1.03033 0.96125 1.98677 1.41254 1.94837 1.83532 1.20813 0.96034 0.94507 1.20975 0.89263 0.90246 0.88745 0.77499 0.91064 0.88093 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.50 36.01 0.38 -0.71 16 2 C 0.11 1.89 7.57 -80.11 -0.61 1.28 16 3 N -0.34 -6.10 11.96 34.85 0.42 -5.68 16 4 O 0.07 1.35 11.11 17.10 0.19 1.54 16 5 C 0.27 5.20 8.82 -16.13 -0.14 5.06 16 6 N -0.54 -9.69 10.46 -14.52 -0.15 -9.85 16 7 C 0.38 6.34 12.22 -91.98 -1.12 5.21 16 8 N -0.56 -10.93 6.64 -14.54 -0.10 -11.02 16 9 C 0.46 9.64 6.70 -16.54 -0.11 9.53 16 10 O -0.29 -6.40 9.75 -17.72 -0.17 -6.58 16 11 C 0.17 3.88 1.96 -27.88 -0.05 3.83 16 12 H 0.08 1.88 5.59 -51.93 -0.29 1.59 16 13 C -0.60 -14.48 8.69 -34.44 -0.30 -14.78 16 14 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.04 0.94 5.46 -17.82 -0.10 0.84 16 16 N -0.87 -23.52 13.62 55.43 0.75 -22.77 16 17 Si 1.07 21.97 29.91 -169.99 -5.08 16.89 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 21 C -0.03 -0.52 6.31 37.16 0.23 -0.28 16 22 Cl -0.21 -3.80 25.98 -51.86 -1.35 -5.15 16 23 C -0.31 -6.18 6.56 -105.13 -0.69 -6.87 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 27 H 0.21 2.57 8.06 -52.49 -0.42 2.15 16 28 H 0.28 7.65 6.67 -40.82 -0.27 7.37 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 284.36 15.07 4.29 4.29 Total: -1.00 -27.65 284.36 -6.02 -33.67 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.30 Total: 1.55 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.51 Total: 3.12 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.92 Total: -49.32 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.02 Total: -5.04 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.08 Total: 16.89 kcal Atomic # 17 Polarization: -3.80 SS G_CDS: -1.35 Total: -5.15 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.65 -6.02 -33.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228303562.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.090 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds