Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48503 * 109.46770 * 274.39727 * 3 2 1 5 5 H 1.48503 * 109.47059 * 34.39184 * 3 2 1 6 6 H 1.48496 * 109.47359 * 154.39634 * 3 2 1 7 7 C 1.37874 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00005 * 5.09496 * 7 2 1 9 9 C 1.50701 * 120.00206 * 185.09381 * 7 2 1 10 10 H 1.08995 * 109.46723 * 325.67977 * 9 7 2 11 11 C 1.52994 * 109.46881 * 85.68276 * 9 7 2 12 12 Cl 1.80311 * 109.46974 * 182.98477 * 11 9 7 13 13 O 1.42897 * 109.47092 * 205.68066 * 9 7 2 14 14 C 1.36032 * 117.00112 * 142.21955 * 13 9 7 15 15 C 1.38004 * 119.87102 * 2.29532 * 14 13 9 16 16 C 1.39680 * 119.63631 * 179.69945 * 15 14 13 17 17 C 1.46528 * 133.90106 * 179.59369 * 16 15 14 18 18 C 1.34228 * 107.02232 * 180.53415 * 17 16 15 19 19 N 1.36870 * 109.93009 * 0.23957 * 18 17 16 20 20 H 0.96993 * 125.07543 * 180.02562 * 19 18 17 21 21 C 1.37892 * 109.84464 * 359.97438 * 19 18 17 22 22 C 1.39098 * 133.33249 * 180.02562 * 21 19 18 23 23 C 1.37869 * 119.97038 * 180.02562 * 22 21 19 24 24 F 1.35106 * 119.70953 * 180.02562 * 23 22 21 25 25 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47490 * 302.97901 * 11 9 7 27 27 H 1.09000 * 109.47654 * 62.98569 * 11 9 7 28 28 H 1.08005 * 120.18432 * 359.97438 * 15 14 13 29 29 H 1.07998 * 126.48984 * 0.79051 * 17 16 15 30 30 H 1.07998 * 125.03091 * 180.27313 * 18 17 16 31 31 H 1.07997 * 120.01273 * 359.97252 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4037 2.1000 -1.3960 5 1 1.4961 2.6241 0.7909 6 1 3.5901 1.4152 0.6050 7 6 2.0046 -1.1940 0.0005 8 1 1.4678 -2.1276 -0.0821 9 6 3.5071 -1.1965 0.1164 10 1 3.9124 -0.3237 -0.3955 11 6 3.9048 -1.1521 1.5931 12 17 5.7006 -1.0666 1.7296 13 8 4.0290 -2.3846 -0.4819 14 6 5.1948 -2.2674 -1.1729 15 6 5.8406 -1.0491 -1.2298 16 6 7.0406 -0.9356 -1.9355 17 6 7.9621 0.1721 -2.2016 18 6 8.9567 -0.3173 -2.9585 19 7 8.7453 -1.6471 -3.2038 20 1 9.3295 -2.2169 -3.7280 21 6 7.5784 -2.0560 -2.5935 22 6 6.9137 -3.2759 -2.5251 23 6 5.7332 -3.3785 -1.8204 24 9 5.0922 -4.5661 -1.7569 25 1 -0.4850 0.8400 -0.0004 26 1 3.4626 -0.2732 2.0622 27 1 3.5448 -2.0510 2.0936 28 1 5.4227 -0.1890 -0.7276 29 1 7.8623 1.1888 -1.8512 30 1 9.7992 0.2536 -3.3199 31 1 7.3217 -4.1422 -3.0245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228887944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = -29.947949 kcal Electronic energy + Delta-G solvation = -19903.985300 eV Core-core repulsion = 16512.883459 eV Total energy + Delta-G solvation = -3391.101842 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.32483 -40.97577 -38.71343 -35.56647 -34.95902 -33.16469 -31.60163 -30.56786 -28.43731 -27.94090 -25.29740 -23.43483 -21.55108 -20.68531 -20.54565 -18.44487 -17.27891 -16.83300 -16.75487 -15.47342 -15.37813 -14.99832 -14.35219 -14.19881 -14.03521 -13.69514 -13.34418 -13.19401 -13.00323 -12.81305 -12.47423 -12.15072 -11.80451 -11.51711 -11.10229 -11.01434 -10.68586 -10.45204 -10.05234 -9.78574 -9.62974 -9.40586 -9.18099 -8.86109 -7.62173 -7.13836 -6.43303 -4.49446 1.19390 1.89953 2.80944 2.98671 3.09982 3.14278 3.16571 3.18565 3.97483 4.06761 4.08919 4.70755 4.87799 4.88491 4.96733 5.37024 5.43484 5.57017 5.74667 5.80788 5.93681 5.99499 6.08236 6.21356 6.40650 6.52435 6.66109 6.81839 6.93188 7.16563 7.20406 7.61556 7.91132 8.36222 8.71748 9.13008 10.67514 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.006691 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.966130 B = 4183.794740 C = 4560.797115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.086 3.914 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.178 3.822 10 H 0.051 0.949 11 C -0.039 4.039 12 Cl -0.227 7.227 13 O -0.293 6.293 14 C 0.102 3.898 15 C -0.137 4.137 16 C -0.077 4.077 17 C -0.205 4.205 18 C 0.049 3.951 19 N -0.598 5.598 20 H 0.412 0.588 21 C 0.076 3.924 22 C -0.142 4.142 23 C 0.093 3.907 24 F -0.132 7.132 25 H 0.273 0.727 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.274 -0.138 -4.263 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.120 4.120 3 Si 0.682 3.318 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.562 4.562 8 H 0.110 0.890 9 C 0.122 3.878 10 H 0.069 0.931 11 C -0.102 4.102 12 Cl -0.202 7.202 13 O -0.206 6.206 14 C 0.054 3.946 15 C -0.157 4.157 16 C -0.082 4.082 17 C -0.230 4.230 18 C -0.077 4.077 19 N -0.203 5.203 20 H 0.248 0.752 21 C -0.029 4.029 22 C -0.164 4.164 23 C 0.073 3.927 24 F -0.111 7.111 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.185 0.815 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.124 -0.281 -4.259 16.679 hybrid contribution 0.600 0.713 -0.118 0.939 sum 16.723 0.432 -4.378 17.292 Atomic orbital electron populations 1.69842 1.06155 1.27849 1.46793 1.24905 0.94879 0.98754 0.93505 0.87135 0.81004 0.83894 0.79768 1.19140 1.20135 1.17860 1.20744 0.86709 0.96072 1.52664 0.89040 1.20861 0.95383 0.84109 0.87447 0.93141 1.26022 0.76725 1.04991 1.02438 1.98673 1.23566 1.99201 1.98715 1.86291 1.32875 1.37443 1.63977 1.18734 0.88868 0.92348 0.94698 1.20586 0.95292 0.97271 1.02540 1.18936 0.95733 0.93268 1.00246 1.21666 0.96310 0.98655 1.06418 1.21712 1.00721 0.83724 1.01582 1.41620 1.21271 1.09663 1.47772 0.75176 1.17625 0.89843 0.94624 1.00853 1.19430 0.95551 0.96339 1.05074 1.16450 0.93059 0.80409 1.02819 1.91477 1.81043 1.43541 1.95027 0.91673 0.88601 0.88626 0.84128 0.83809 0.81527 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.71 13.96 55.43 0.77 -23.94 16 2 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.86 19.32 26.38 -169.99 -4.48 14.83 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.25 -5.36 5.98 56.52 0.34 -5.02 16 7 C -0.52 -14.09 9.23 -34.44 -0.32 -14.41 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 C 0.18 4.13 1.69 -27.89 -0.05 4.08 16 10 H 0.05 1.17 2.90 -51.93 -0.15 1.02 16 11 C -0.04 -0.80 5.96 37.15 0.22 -0.58 16 12 Cl -0.23 -4.34 25.87 -51.86 -1.34 -5.69 16 13 O -0.29 -6.86 9.52 -19.84 -0.19 -7.05 16 14 C 0.10 2.12 6.10 -39.23 -0.24 1.88 16 15 C -0.14 -2.66 7.30 -39.13 -0.29 -2.94 16 16 C -0.08 -1.31 6.37 -105.12 -0.67 -1.98 16 17 C -0.20 -2.80 11.08 -37.66 -0.42 -3.22 16 18 C 0.05 0.51 11.82 -16.72 -0.20 0.32 16 19 N -0.60 -6.60 6.08 -10.62 -0.06 -6.67 16 20 H 0.41 3.05 8.96 -40.82 -0.37 2.69 16 21 C 0.08 1.15 7.27 -83.92 -0.61 0.54 16 22 C -0.14 -2.19 10.03 -39.40 -0.40 -2.59 16 23 C 0.09 1.76 7.29 -39.28 -0.29 1.47 16 24 F -0.13 -2.57 17.09 2.25 0.04 -2.53 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.10 1.92 6.91 -51.93 -0.36 1.56 16 27 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 28 H 0.14 2.82 5.04 -52.48 -0.26 2.55 16 29 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 281.20 15.07 4.24 4.24 Total: -1.00 -29.98 281.20 -6.82 -36.81 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -2.45 Total: 5.25 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -3.34 Total: -15.25 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.71 Total: -30.61 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.19 Total: -7.05 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.48 Total: 14.83 kcal Atomic # 17 Polarization: -4.34 SS G_CDS: -1.34 Total: -5.69 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.98 -6.82 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228887944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.859 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds