Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48498 * 109.47234 * 239.99854 * 3 2 1 5 5 H 1.48499 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46847 * 120.00163 * 3 2 1 7 7 C 1.37878 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00716 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99727 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47211 * 300.00736 * 9 7 2 11 11 C 1.53007 * 109.47157 * 59.99941 * 9 7 2 12 12 Cl 1.80292 * 109.47320 * 184.99957 * 11 9 7 13 13 O 1.42898 * 109.47401 * 179.97438 * 9 7 2 14 14 C 1.35971 * 116.99976 * 146.14178 * 13 9 7 15 15 C 1.39187 * 120.45470 * 176.81858 * 14 13 9 16 16 N 1.30955 * 121.24357 * 180.28868 * 15 14 13 17 17 C 1.34570 * 122.24487 * 359.74463 * 16 15 14 18 18 C 1.45335 * 128.96738 * 179.97438 * 17 16 15 19 19 C 1.31929 * 114.94302 * 179.97438 * 18 17 16 20 20 S 1.75319 * 111.38436 * 0.02562 * 19 18 17 21 21 C 1.39790 * 119.32313 * 0.02562 * 17 16 15 22 22 C 1.38453 * 120.45684 * 356.59981 * 14 13 9 23 23 H 0.97000 * 120.00251 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46804 * 305.00187 * 11 9 7 25 25 H 1.09000 * 109.46662 * 65.00084 * 11 9 7 26 26 H 1.08000 * 119.37679 * 0.02562 * 15 14 13 27 27 H 1.07996 * 122.52636 * 0.03097 * 18 17 16 28 28 H 1.08000 * 124.30183 * 180.02562 * 19 18 17 29 29 H 1.07993 * 120.68766 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5800 -1.2495 12 17 -0.6394 -4.0714 -1.1773 13 8 2.1797 -3.5853 -0.0017 14 6 1.8166 -4.7086 0.6730 15 6 2.6367 -5.8332 0.6638 16 7 2.2996 -6.9249 1.3036 17 6 1.1550 -7.0218 2.0047 18 6 0.6398 -8.1503 2.7618 19 6 -0.5228 -7.9417 3.3496 20 16 -1.1171 -6.3228 3.0342 21 6 0.2896 -5.9253 2.0575 22 6 0.6283 -4.7479 1.3824 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2765 -1.7043 -1.2949 25 1 1.0024 -2.6115 -2.1374 26 1 3.5666 -5.8063 0.1152 27 1 1.1691 -9.0886 2.8383 28 1 -1.0421 -8.6749 3.9488 29 1 -0.0256 -3.8889 1.4103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228901162.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = 4.238591 kcal Electronic energy + Delta-G solvation = -17387.403476 eV Core-core repulsion = 14428.164155 eV Total energy + Delta-G solvation = -2959.239321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18607 -38.01920 -35.16457 -34.75785 -33.52569 -31.61846 -29.99426 -28.33765 -25.45318 -23.89383 -23.66764 -21.34734 -20.40350 -18.39507 -17.18575 -16.49973 -16.04055 -15.69634 -15.00878 -14.82548 -14.15823 -13.72279 -13.60876 -13.39713 -12.86210 -12.42697 -12.28717 -12.12478 -11.77971 -11.38930 -11.23325 -11.06072 -10.85524 -10.77950 -10.43194 -10.16609 -9.70511 -9.53958 -9.21490 -9.15618 -8.77642 -7.87941 -7.45239 -6.53491 -4.62360 0.96498 1.38369 1.64887 2.13856 2.45126 3.08058 3.15134 3.17105 3.28575 3.83194 4.09312 4.19414 4.39950 4.82423 5.01674 5.20218 5.23892 5.44371 5.77104 5.85038 6.02254 6.11037 6.14613 6.25717 6.42008 6.62423 6.76847 6.99804 7.42256 7.61990 7.97789 8.20654 8.52524 9.05992 10.53519 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.005238 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.057492 B = 5344.339951 C = 5466.857627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.204 3.796 10 H 0.051 0.949 11 C -0.037 4.037 12 Cl -0.241 7.241 13 O -0.297 6.297 14 C 0.126 3.874 15 C 0.092 3.908 16 N -0.428 5.428 17 C 0.060 3.940 18 C -0.091 4.091 19 C -0.199 4.199 20 S 0.085 5.915 21 C -0.141 4.141 22 C -0.129 4.129 23 H 0.274 0.726 24 H 0.136 0.864 25 H 0.077 0.923 26 H 0.167 0.833 27 H 0.147 0.853 28 H 0.169 0.831 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 -9.308 3.381 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.096 0.904 9 C 0.149 3.851 10 H 0.068 0.932 11 C -0.100 4.100 12 Cl -0.215 7.215 13 O -0.208 6.208 14 C 0.072 3.928 15 C -0.078 4.078 16 N -0.138 5.138 17 C -0.073 4.073 18 C -0.122 4.122 19 C -0.335 4.335 20 S 0.345 5.655 21 C -0.258 4.258 22 C -0.161 4.161 23 H 0.084 0.916 24 H 0.154 0.846 25 H 0.096 0.904 26 H 0.184 0.816 27 H 0.165 0.835 28 H 0.186 0.814 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.040 -9.264 3.740 10.197 hybrid contribution 0.690 0.889 -0.427 1.204 sum -1.350 -8.375 3.313 9.108 Atomic orbital electron populations 1.69774 1.06039 1.28425 1.48213 1.24989 0.95210 0.99925 0.93729 0.86196 0.79310 0.80781 0.79257 1.19624 1.20793 1.19643 1.20962 0.94417 0.87658 1.53270 0.90351 1.20637 0.87455 0.82854 0.94146 0.93185 1.25795 0.95454 0.86828 1.01896 1.98653 1.75841 1.48007 1.99002 1.86200 1.46566 1.21434 1.66616 1.20070 0.92651 0.89214 0.90821 1.22092 1.00018 0.86345 0.99352 1.67460 1.15323 1.25017 1.05950 1.19925 0.92669 0.93064 1.01684 1.20494 0.95720 0.98226 0.97779 1.24980 1.00503 1.00765 1.07214 1.84147 1.21632 1.08298 1.51431 1.23253 0.99900 0.98628 1.04042 1.21127 0.98306 0.97669 0.98955 0.91577 0.84641 0.90395 0.81584 0.83544 0.81375 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.32 11.29 55.43 0.63 -21.69 15 2 C 0.07 1.60 5.29 -17.82 -0.09 1.51 15 3 Si 0.92 19.27 29.54 -169.99 -5.02 14.25 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.53 -13.11 8.89 -34.44 -0.31 -13.42 15 8 H 0.08 1.96 7.81 -52.49 -0.41 1.55 15 9 C 0.20 4.73 2.19 -27.88 -0.06 4.67 15 10 H 0.05 1.23 5.40 -51.93 -0.28 0.95 15 11 C -0.04 -0.81 6.17 37.16 0.23 -0.58 15 12 Cl -0.24 -4.88 25.78 -51.86 -1.34 -6.22 15 13 O -0.30 -6.48 9.74 -19.65 -0.19 -6.67 15 14 C 0.13 2.50 5.99 -39.15 -0.23 2.27 15 15 C 0.09 1.65 11.11 -17.57 -0.20 1.46 15 16 N -0.43 -7.72 10.40 -10.07 -0.10 -7.82 15 17 C 0.06 1.05 7.16 -83.27 -0.60 0.46 15 18 C -0.09 -1.27 10.39 -38.67 -0.40 -1.67 15 19 C -0.20 -2.44 11.02 28.82 0.32 -2.13 15 20 S 0.08 1.24 23.23 -107.50 -2.50 -1.26 15 21 C -0.14 -2.54 6.49 -38.38 -0.25 -2.79 15 22 C -0.13 -2.54 7.25 -38.89 -0.28 -2.82 15 23 H 0.27 6.57 8.31 -40.82 -0.34 6.23 15 24 H 0.14 3.18 5.95 -51.93 -0.31 2.88 15 25 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 26 H 0.17 2.52 8.06 -52.49 -0.42 2.10 15 27 H 0.15 1.67 8.06 -52.49 -0.42 1.24 15 28 H 0.17 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.15 3.15 5.26 -52.49 -0.28 2.87 15 LS Contribution 278.32 15.07 4.19 4.19 Total: -1.00 -25.89 278.32 -8.31 -34.20 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.10 Total: 4.07 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.87 Total: -13.05 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.52 Total: -29.52 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.19 Total: -6.67 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.50 Total: -1.26 kcal Atomic # 17 Polarization: -4.88 SS G_CDS: -1.34 Total: -6.22 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.89 -8.31 -34.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228901162.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.439 kcal (2) G-P(sol) polarization free energy of solvation -25.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds