Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47142 * 300.00300 * 3 2 1 6 6 H 1.48504 * 109.47216 * 59.99998 * 3 2 1 7 7 C 1.37878 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46725 * 299.99724 * 9 7 2 11 11 C 1.52997 * 109.47522 * 59.99697 * 9 7 2 12 12 Cl 1.80298 * 109.47287 * 185.00129 * 11 9 7 13 13 O 1.42900 * 109.47022 * 180.02562 * 9 7 2 14 14 C 1.35693 * 117.00253 * 146.04637 * 13 9 7 15 15 C 1.38395 * 120.70042 * 356.84545 * 14 13 9 16 16 C 1.38399 * 119.40186 * 179.97438 * 15 14 13 17 17 N 1.31382 * 121.13441 * 0.02562 * 16 15 14 18 18 C 1.33566 * 122.27176 * 359.97438 * 17 16 15 19 19 S 1.76016 * 130.26405 * 180.02562 * 18 17 16 20 20 C 1.75282 * 92.22879 * 179.97438 * 19 18 17 21 21 C 1.31779 * 111.41502 * 0.02562 * 20 19 18 22 22 C 1.39666 * 120.23138 * 0.02562 * 18 17 16 23 23 H 0.96995 * 120.00471 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47192 * 305.00258 * 11 9 7 25 25 H 1.09001 * 109.46946 * 65.00218 * 11 9 7 26 26 H 1.07999 * 120.29956 * 0.24384 * 15 14 13 27 27 H 1.08001 * 119.43262 * 179.97438 * 16 15 14 28 28 H 1.08003 * 124.29538 * 179.97438 * 20 19 18 29 29 H 1.07994 * 122.59026 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 6 0.3718 -2.5794 -1.2512 12 17 -0.6387 -4.0709 -1.1803 13 8 2.1796 -3.5853 -0.0015 14 6 1.8172 -4.7056 0.6730 15 6 0.6279 -4.7514 1.3793 16 6 0.2845 -5.9081 2.0573 17 7 1.0682 -6.9625 2.0421 18 6 2.2276 -6.9798 1.3792 19 16 3.4261 -8.2587 1.2167 20 6 4.4546 -7.2604 0.2077 21 6 3.9292 -6.0670 0.0170 22 6 2.6485 -5.8533 0.6690 23 1 -0.4850 0.8400 0.0004 24 1 -0.2756 -1.7037 -1.2968 25 1 1.0038 -2.6106 -2.1388 26 1 -0.0283 -3.8939 1.3977 27 1 -0.6433 -5.9443 2.6089 28 1 5.3994 -7.5823 -0.2048 29 1 4.4132 -5.3067 -0.5779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229205463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = 1.940625 kcal Electronic energy + Delta-G solvation = -17508.488035 eV Core-core repulsion = 14549.149067 eV Total energy + Delta-G solvation = -2959.338968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19529 -37.87328 -35.40570 -34.98967 -33.63259 -30.79075 -29.84192 -28.81817 -25.48417 -24.22175 -23.08506 -21.42010 -20.44265 -18.46028 -17.24975 -16.47400 -15.63726 -15.45415 -15.09398 -14.84191 -14.15625 -13.84777 -13.61002 -13.48418 -13.13729 -12.39012 -12.26897 -12.12378 -11.51588 -11.48710 -11.27404 -11.15520 -10.93845 -10.68869 -10.36555 -10.00779 -9.63205 -9.45468 -9.19048 -8.83650 -8.66349 -8.33126 -7.41197 -6.56685 -4.65281 0.93598 1.51952 1.61721 2.15035 2.56561 3.03188 3.13521 3.18368 3.25863 3.80717 4.09716 4.19019 4.74734 4.79774 5.00042 5.20480 5.36933 5.49063 5.85311 5.95645 6.05870 6.11371 6.15790 6.36831 6.45982 6.69662 6.78416 6.98496 7.39917 7.58568 8.02995 8.15939 8.49395 9.03164 10.50475 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.005526 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.086051 B = 5066.181086 C = 5652.416066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.203 3.797 10 H 0.056 0.944 11 C -0.037 4.037 12 Cl -0.239 7.239 13 O -0.297 6.297 14 C 0.241 3.759 15 C -0.262 4.262 16 C 0.165 3.835 17 N -0.501 5.501 18 C 0.091 3.909 19 S 0.107 5.893 20 C -0.222 4.222 21 C -0.077 4.077 22 C -0.171 4.171 23 H 0.273 0.727 24 H 0.137 0.863 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.406 -8.465 0.372 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.563 4.563 8 H 0.096 0.904 9 C 0.148 3.852 10 H 0.073 0.927 11 C -0.099 4.099 12 Cl -0.213 7.213 13 O -0.206 6.206 14 C 0.183 3.817 15 C -0.286 4.286 16 C 0.000 4.000 17 N -0.217 5.217 18 C -0.153 4.153 19 S 0.365 5.635 20 C -0.355 4.355 21 C -0.107 4.107 22 C -0.182 4.182 23 H 0.083 0.917 24 H 0.155 0.845 25 H 0.095 0.905 26 H 0.172 0.828 27 H 0.177 0.823 28 H 0.185 0.815 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.339 -10.567 1.167 11.143 hybrid contribution 0.135 3.152 -1.045 3.324 sum 3.474 -7.415 0.122 8.189 Atomic orbital electron populations 1.69787 1.06012 1.28249 1.48296 1.24982 0.95221 0.99917 0.93712 0.86094 0.79996 0.81422 0.78078 1.19222 1.20418 1.20382 1.21025 0.94440 0.87621 1.53175 0.90355 1.20732 0.87420 0.82562 0.94470 0.92654 1.25766 0.95462 0.86985 1.01730 1.98653 1.75764 1.47852 1.99023 1.86117 1.46960 1.21581 1.65948 1.19158 0.90190 0.85776 0.86569 1.22205 0.99302 1.02472 1.04572 1.22412 0.96882 0.87008 0.93689 1.67193 1.03525 1.29625 1.21331 1.23254 0.97435 0.96010 0.98602 1.83892 1.12054 1.14418 1.53176 1.24894 1.05001 0.98202 1.07400 1.20740 0.93378 0.97235 0.99357 1.19392 0.98061 0.94010 1.06712 0.91654 0.84540 0.90540 0.82838 0.82269 0.81469 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.98 11.29 55.43 0.63 -21.36 15 2 C 0.07 1.59 5.29 -17.82 -0.09 1.50 15 3 Si 0.92 19.12 29.54 -169.99 -5.02 14.10 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.52 -13.01 8.89 -34.44 -0.31 -13.32 15 8 H 0.08 1.96 7.81 -52.49 -0.41 1.55 15 9 C 0.20 4.65 2.19 -27.88 -0.06 4.59 15 10 H 0.06 1.33 5.41 -51.92 -0.28 1.05 15 11 C -0.04 -0.80 6.17 37.16 0.23 -0.57 15 12 Cl -0.24 -4.74 25.77 -51.86 -1.34 -6.08 15 13 O -0.30 -6.55 9.68 -18.78 -0.18 -6.73 15 14 C 0.24 4.88 6.08 -38.20 -0.23 4.65 15 15 C -0.26 -4.94 7.18 -39.46 -0.28 -5.22 15 16 C 0.17 2.82 11.17 -17.68 -0.20 2.62 15 17 N -0.50 -9.13 10.38 -11.83 -0.12 -9.25 15 18 C 0.09 1.65 7.65 -16.26 -0.12 1.52 15 19 S 0.11 1.53 23.23 -107.50 -2.50 -0.97 15 20 C -0.22 -2.95 11.02 28.84 0.32 -2.63 15 21 C -0.08 -1.23 10.31 -38.67 -0.40 -1.63 15 22 C -0.17 -3.21 6.06 -105.24 -0.64 -3.85 15 23 H 0.27 6.42 8.31 -40.82 -0.34 6.08 15 24 H 0.14 3.16 5.95 -51.93 -0.31 2.86 15 25 H 0.08 1.62 8.14 -51.93 -0.42 1.20 15 26 H 0.15 2.96 5.22 -52.49 -0.27 2.69 15 27 H 0.16 2.15 8.06 -52.49 -0.42 1.72 15 28 H 0.17 1.63 8.06 -52.48 -0.42 1.21 15 29 H 0.15 2.19 8.06 -52.49 -0.42 1.77 15 LS Contribution 278.24 15.07 4.19 4.19 Total: -1.00 -25.97 278.24 -8.23 -34.20 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.10 Total: 4.23 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.79 Total: -12.33 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.50 Total: -30.61 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.18 Total: -6.73 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.50 Total: -0.97 kcal Atomic # 17 Polarization: -4.74 SS G_CDS: -1.34 Total: -6.08 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.97 -8.23 -34.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229205463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.144 kcal (2) G-P(sol) polarization free energy of solvation -25.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds