Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47142 * 300.00300 * 3 2 1 6 6 H 1.48504 * 109.47216 * 59.99998 * 3 2 1 7 7 C 1.37878 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46725 * 299.99724 * 9 7 2 11 11 C 1.52997 * 109.47522 * 59.99697 * 9 7 2 12 12 Cl 1.80298 * 109.47287 * 185.00129 * 11 9 7 13 13 O 1.42900 * 109.47022 * 180.02562 * 9 7 2 14 14 C 1.35693 * 117.00253 * 146.04637 * 13 9 7 15 15 C 1.38395 * 120.70042 * 356.84545 * 14 13 9 16 16 C 1.38399 * 119.40186 * 179.97438 * 15 14 13 17 17 N 1.31382 * 121.13441 * 0.02562 * 16 15 14 18 18 C 1.33566 * 122.27176 * 359.97438 * 17 16 15 19 19 S 1.76016 * 130.26405 * 180.02562 * 18 17 16 20 20 C 1.75282 * 92.22879 * 179.97438 * 19 18 17 21 21 C 1.31779 * 111.41502 * 0.02562 * 20 19 18 22 22 C 1.39666 * 120.23138 * 0.02562 * 18 17 16 23 23 H 0.96995 * 120.00471 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47192 * 305.00258 * 11 9 7 25 25 H 1.09001 * 109.46946 * 65.00218 * 11 9 7 26 26 H 1.07999 * 120.29956 * 0.24384 * 15 14 13 27 27 H 1.08001 * 119.43262 * 179.97438 * 16 15 14 28 28 H 1.08003 * 124.29538 * 179.97438 * 20 19 18 29 29 H 1.07994 * 122.59026 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 6 0.3718 -2.5794 -1.2512 12 17 -0.6387 -4.0709 -1.1803 13 8 2.1796 -3.5853 -0.0015 14 6 1.8172 -4.7056 0.6730 15 6 0.6279 -4.7514 1.3793 16 6 0.2845 -5.9081 2.0573 17 7 1.0682 -6.9625 2.0421 18 6 2.2276 -6.9798 1.3792 19 16 3.4261 -8.2587 1.2167 20 6 4.4546 -7.2604 0.2077 21 6 3.9292 -6.0670 0.0170 22 6 2.6485 -5.8533 0.6690 23 1 -0.4850 0.8400 0.0004 24 1 -0.2756 -1.7037 -1.2968 25 1 1.0038 -2.6106 -2.1388 26 1 -0.0283 -3.8939 1.3977 27 1 -0.6433 -5.9443 2.6089 28 1 5.3994 -7.5823 -0.2048 29 1 4.4132 -5.3067 -0.5779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229205463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -11.792647 kcal Electronic energy + Delta-G solvation = -17509.083554 eV Core-core repulsion = 14549.149067 eV Total energy + Delta-G solvation = -2959.934487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62798 -39.42509 -36.74372 -36.58377 -35.44545 -32.31642 -31.42794 -30.23854 -27.33482 -25.63333 -24.48351 -22.98428 -21.78468 -19.93006 -18.96298 -18.01937 -17.04083 -16.80585 -16.76217 -16.38764 -15.64418 -15.20846 -15.12943 -14.93161 -14.66897 -14.02847 -13.85452 -13.48846 -13.11765 -12.94334 -12.86391 -12.75815 -12.57978 -12.12522 -11.82046 -11.65150 -11.34681 -11.17769 -10.69876 -10.54080 -10.10790 -9.64325 -8.72251 -8.41544 -6.57576 -0.36805 0.17129 0.29251 0.96355 1.31767 1.36974 1.43195 1.54070 1.55890 2.17884 2.49528 2.70888 2.93508 3.51137 3.69002 3.87284 3.96888 4.18491 4.28248 4.34756 4.52890 4.72847 4.85318 4.93248 5.08932 5.17618 5.29130 5.40116 5.53423 5.75974 6.33467 6.64445 6.78630 7.14625 8.65273 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.005526 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.086051 B = 5066.181086 C = 5652.416066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.209 3.791 10 H 0.040 0.960 11 C -0.027 4.027 12 Cl -0.222 7.222 13 O -0.311 6.311 14 C 0.211 3.789 15 C -0.267 4.267 16 C 0.165 3.835 17 N -0.507 5.507 18 C 0.060 3.940 19 S 0.156 5.844 20 C -0.191 4.191 21 C -0.112 4.112 22 C -0.184 4.184 23 H 0.277 0.723 24 H 0.122 0.878 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.193 0.807 28 H 0.211 0.789 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -9.631 0.376 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.154 3.846 10 H 0.058 0.942 11 C -0.090 4.090 12 Cl -0.196 7.196 13 O -0.221 6.221 14 C 0.154 3.846 15 C -0.291 4.291 16 C -0.001 4.001 17 N -0.223 5.223 18 C -0.183 4.183 19 S 0.414 5.586 20 C -0.324 4.324 21 C -0.141 4.141 22 C -0.195 4.195 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.210 0.790 28 H 0.228 0.772 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.359 -11.767 1.173 12.603 hybrid contribution -0.143 3.325 -1.014 3.479 sum 4.216 -8.442 0.160 9.437 Atomic orbital electron populations 1.69862 1.06965 1.29117 1.48307 1.25678 0.95950 1.02495 0.93037 0.85200 0.78692 0.77794 0.78241 1.19295 1.19657 1.20028 1.21221 0.94184 0.89049 1.54225 0.91443 1.20482 0.87346 0.82587 0.94192 0.94221 1.25436 0.95197 0.87170 1.01195 1.98645 1.75216 1.46714 1.99023 1.86059 1.46975 1.22085 1.67021 1.19461 0.91520 0.85826 0.87746 1.22198 0.98947 1.02849 1.05095 1.22896 0.97822 0.86089 0.93285 1.67304 1.03816 1.29811 1.21343 1.23879 0.98201 0.97496 0.98760 1.83762 1.10108 1.12454 1.52271 1.25427 1.05540 0.96648 1.04771 1.20809 0.93155 0.98850 1.01271 1.19753 0.99081 0.93671 1.06996 0.91304 0.86008 0.90491 0.83880 0.79014 0.77248 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.41 11.29 21.45 0.24 -45.17 15 2 C 0.03 1.48 5.29 84.65 0.45 1.93 15 3 Si 0.98 39.18 29.54 68.60 2.03 41.21 15 4 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 7 C -0.55 -27.94 8.89 25.60 0.23 -27.71 15 8 H 0.07 3.49 7.81 -2.91 -0.02 3.46 15 9 C 0.21 9.91 2.19 29.85 0.07 9.97 15 10 H 0.04 2.00 5.41 -2.38 -0.01 1.99 15 11 C -0.03 -1.20 6.17 71.98 0.44 -0.76 15 12 Cl -0.22 -8.88 25.77 -2.72 -0.07 -8.95 15 13 O -0.31 -14.19 9.68 -90.12 -0.87 -15.06 15 14 C 0.21 8.74 6.08 23.17 0.14 8.88 15 15 C -0.27 -10.25 7.18 22.35 0.16 -10.09 15 16 C 0.16 5.53 11.17 84.80 0.95 6.48 15 17 N -0.51 -17.97 10.38 -191.35 -1.99 -19.95 15 18 C 0.06 2.09 7.65 84.77 0.65 2.74 15 19 S 0.16 4.00 23.23 -56.49 -1.31 2.69 15 20 C -0.19 -4.44 11.02 67.07 0.74 -3.70 15 21 C -0.11 -3.41 10.31 23.33 0.24 -3.17 15 22 C -0.18 -6.85 6.06 -20.26 -0.12 -6.98 15 23 H 0.28 13.06 8.31 -92.71 -0.77 12.29 15 24 H 0.12 5.79 5.95 -2.39 -0.01 5.78 15 25 H 0.08 3.34 8.14 -2.39 -0.02 3.32 15 26 H 0.14 5.73 5.22 -2.91 -0.02 5.71 15 27 H 0.19 4.91 8.06 -2.91 -0.02 4.89 15 28 H 0.21 3.03 8.06 -2.91 -0.02 3.01 15 29 H 0.15 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -55.90 278.24 3.16 -52.74 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.20 Total: 14.89 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.94 Total: -22.40 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.74 Total: -65.13 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.87 Total: -15.06 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.31 Total: 2.69 kcal Atomic # 17 Polarization: -8.88 SS G_CDS: -0.07 Total: -8.95 kcal Total: -55.90 3.16 -52.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229205463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.951 kcal (2) G-P(sol) polarization free energy of solvation -55.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds