Wall clock time and date at job start Tue Mar 31 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99617 * 2 1 4 4 H 1.48502 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47183 * 300.00062 * 3 2 1 6 6 H 1.48501 * 109.47445 * 59.99974 * 3 2 1 7 7 C 1.37876 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00232 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46883 * 300.00055 * 9 7 2 11 11 C 1.53004 * 109.46964 * 59.99557 * 9 7 2 12 12 Cl 1.80306 * 109.46841 * 185.00129 * 11 9 7 13 13 O 1.42895 * 109.47288 * 179.97438 * 9 7 2 14 14 C 1.35298 * 116.99961 * 150.81724 * 13 9 7 15 15 C 1.36222 * 120.44623 * 174.72056 * 14 13 9 16 16 C 1.40357 * 119.35531 * 180.28781 * 15 14 13 17 17 O 1.35495 * 119.90283 * 179.74453 * 16 15 14 18 18 N 1.31947 * 120.19511 * 359.46771 * 16 15 14 19 19 C 1.34127 * 120.86636 * 0.27753 * 18 16 15 20 20 C 1.38796 * 132.47011 * 179.97438 * 19 18 16 21 21 C 1.38851 * 107.62192 * 180.02562 * 20 19 18 22 22 N 1.31275 * 108.94227 * 359.97438 * 21 20 19 23 23 N 1.36971 * 120.44498 * 354.49914 * 14 13 9 24 24 H 0.96996 * 120.00807 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47391 * 305.00080 * 11 9 7 26 26 H 1.08997 * 109.47108 * 65.00402 * 11 9 7 27 27 H 1.08000 * 120.32389 * 0.04769 * 15 14 13 28 28 H 0.96697 * 113.99798 * 269.72703 * 17 16 15 29 29 H 1.08004 * 126.19068 * 359.97438 * 20 19 18 30 30 H 1.07999 * 125.52806 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 0.3720 -2.5805 -1.2490 12 17 -0.6385 -4.0720 -1.1768 13 8 2.1798 -3.5852 0.0005 14 6 1.7790 -4.7361 0.5883 15 6 2.5639 -5.8482 0.5350 16 6 2.1229 -7.0316 1.1475 17 8 2.8924 -8.1457 1.0968 18 7 0.9638 -7.0608 1.7772 19 6 0.1867 -5.9694 1.8394 20 6 -1.0497 -5.7313 2.4233 21 6 -1.3848 -4.4072 2.1731 22 7 -0.4219 -3.8481 1.4776 23 7 0.5807 -4.7973 1.2489 24 1 -0.4851 0.8399 -0.0004 25 1 -0.2755 -1.7049 -1.2953 26 1 1.0039 -2.6124 -2.1365 27 1 3.5145 -5.8207 0.0231 28 1 2.7150 -8.7117 0.3331 29 1 -1.6442 -6.4467 2.9721 30 1 -2.2902 -3.9167 2.4986 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229815982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:40 Heat of formation + Delta-G solvation = 50.826616 kcal Electronic energy + Delta-G solvation = -20484.732833 eV Core-core repulsion = 17117.053601 eV Total energy + Delta-G solvation = -3367.679232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96360 -38.72373 -38.61011 -35.88354 -34.95429 -33.69455 -32.37931 -30.39431 -29.48550 -28.27696 -25.46144 -23.88271 -23.06408 -21.68285 -21.03067 -18.77531 -18.11993 -16.90008 -16.55681 -16.29621 -16.10866 -15.09412 -14.88421 -14.38953 -13.98129 -13.74812 -13.39483 -12.96879 -12.92868 -12.20324 -12.13778 -11.87825 -11.76251 -11.35161 -11.18547 -11.09411 -10.70343 -10.38166 -10.13919 -9.74182 -9.53840 -9.24801 -9.06378 -8.81516 -8.55587 -7.25485 -6.49387 -4.58664 0.99874 1.36681 2.38327 3.05794 3.11077 3.14932 3.18200 3.25383 3.33139 3.63467 3.81404 4.14333 4.63761 4.86112 5.02913 5.27766 5.44686 5.79445 5.87907 6.07597 6.12174 6.17342 6.32294 6.40059 6.78957 6.91243 7.30961 7.33285 7.43255 7.61009 7.73976 8.01882 8.12064 8.52393 9.07036 10.56839 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.006540 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.755101 B = 4280.638259 C = 4693.366634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.068 3.932 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.171 3.829 10 H 0.120 0.880 11 C -0.030 4.030 12 Cl -0.238 7.238 13 O -0.287 6.287 14 C 0.448 3.552 15 C -0.325 4.325 16 C 0.418 3.582 17 O -0.474 6.474 18 N -0.529 5.529 19 C 0.299 3.701 20 C -0.280 4.280 21 C 0.083 3.917 22 N -0.260 5.260 23 N -0.344 5.344 24 H 0.272 0.728 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.167 0.833 28 H 0.407 0.593 29 H 0.155 0.845 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -8.742 -0.045 8.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.137 4.137 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.117 3.883 10 H 0.137 0.863 11 C -0.092 4.092 12 Cl -0.212 7.212 13 O -0.190 6.190 14 C 0.286 3.714 15 C -0.352 4.352 16 C 0.217 3.783 17 O -0.281 6.281 18 N -0.258 5.258 19 C 0.073 3.927 20 C -0.311 4.311 21 C -0.098 4.098 22 N -0.081 5.081 23 N -0.129 5.129 24 H 0.082 0.918 25 H 0.156 0.844 26 H 0.088 0.912 27 H 0.184 0.816 28 H 0.266 0.734 29 H 0.173 0.827 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.279 -7.909 0.189 7.917 hybrid contribution 0.045 0.586 -0.581 0.826 sum 0.324 -7.323 -0.392 7.341 Atomic orbital electron populations 1.69830 1.05885 1.27994 1.47761 1.24940 0.95221 0.99669 0.93852 0.86115 0.79933 0.81558 0.78072 1.19300 1.20425 1.20362 1.20969 0.94215 0.87618 1.53946 0.90562 1.21965 0.87144 0.81045 0.98112 0.86345 1.25640 0.95350 0.87261 1.00979 1.98641 1.75907 1.47760 1.98941 1.86222 1.44905 1.19177 1.68703 1.19639 0.79733 0.88887 0.83095 1.20492 1.06144 0.90649 1.17920 1.18887 0.85368 0.86192 0.87869 1.84662 1.57614 1.34103 1.51709 1.67671 1.06556 1.26745 1.24829 1.20110 0.95463 0.80975 0.96176 1.20773 0.96699 0.98140 1.15524 1.23958 0.98111 0.93232 0.94479 1.78086 0.97880 1.09208 1.22945 1.47950 1.14621 1.12002 1.38292 0.91770 0.84416 0.91207 0.81555 0.73394 0.82713 0.79231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.58 11.29 55.43 0.63 -21.95 16 2 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 3 Si 0.92 19.61 29.54 -169.99 -5.02 14.59 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.53 -13.63 8.89 -34.44 -0.31 -13.94 16 8 H 0.08 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.17 4.13 2.18 -27.88 -0.06 4.07 16 10 H 0.12 3.05 4.43 -62.76 -0.28 2.77 16 11 C -0.03 -0.68 6.17 37.16 0.23 -0.45 16 12 Cl -0.24 -5.02 24.37 -51.86 -1.26 -6.28 16 13 O -0.29 -6.44 9.73 -17.59 -0.17 -6.61 16 14 C 0.45 9.08 6.48 -15.98 -0.10 8.98 16 15 C -0.32 -5.47 9.93 -39.51 -0.39 -5.86 16 16 C 0.42 6.70 7.79 -16.71 -0.13 6.57 16 17 O -0.47 -5.84 13.56 -18.18 -0.25 -6.08 16 18 N -0.53 -9.57 10.52 -12.41 -0.13 -9.70 16 19 C 0.30 5.72 7.92 -155.54 -1.23 4.48 16 20 C -0.28 -4.74 10.92 -39.15 -0.43 -5.17 16 21 C 0.08 1.44 11.95 -17.56 -0.21 1.23 16 22 N -0.26 -5.45 6.60 30.49 0.20 -5.25 16 23 N -0.34 -7.05 2.68 -12.34 -0.03 -7.08 16 24 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 25 H 0.14 3.39 5.95 -51.93 -0.31 3.08 16 26 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.41 2.72 9.06 45.56 0.41 3.13 16 29 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 30 H 0.19 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -29.27 275.00 -6.03 -35.30 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -1.41 Total: 7.41 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.73 Total: 1.51 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.66 Total: -43.97 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.42 Total: -12.69 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 17 Polarization: -5.02 SS G_CDS: -1.26 Total: -6.28 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.27 -6.03 -35.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229815982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.128 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds