Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48503 * 109.47255 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47217 * 119.99818 * 3 2 1 6 6 H 1.48498 * 109.47133 * 240.00031 * 3 2 1 7 7 C 1.37878 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99767 * 187.70187 * 7 2 1 9 9 C 1.50697 * 120.00197 * 7.70594 * 7 2 1 10 10 H 1.09003 * 109.47153 * 34.98536 * 9 7 2 11 11 C 1.52992 * 109.47219 * 154.99082 * 9 7 2 12 12 Cl 1.80305 * 109.47363 * 185.49009 * 11 9 7 13 13 O 1.42901 * 109.46902 * 274.98755 * 9 7 2 14 14 C 1.35975 * 117.00064 * 141.23759 * 13 9 7 15 15 C 1.39239 * 119.74854 * 5.66926 * 14 13 9 16 16 C 1.37573 * 120.02969 * 179.97438 * 15 14 13 17 17 C 1.39323 * 120.18342 * 0.02562 * 16 15 14 18 18 S 1.76125 * 131.59121 * 179.97438 * 17 16 15 19 19 C 1.70640 * 90.83334 * 179.97438 * 18 17 16 20 20 N 1.27947 * 111.51582 * 359.97438 * 19 18 17 21 21 C 1.34669 * 117.84002 * 0.02562 * 20 19 18 22 22 C 1.37612 * 119.74831 * 185.39617 * 14 13 9 23 23 H 0.96995 * 119.99668 * 175.32079 * 1 2 3 24 24 H 1.09004 * 109.46835 * 305.48497 * 11 9 7 25 25 H 1.08998 * 109.47720 * 65.48336 * 11 9 7 26 26 H 1.08000 * 119.98259 * 0.02562 * 15 14 13 27 27 H 1.07999 * 119.90302 * 179.97438 * 16 15 14 28 28 H 1.07995 * 124.23672 * 179.97438 * 19 18 17 29 29 H 1.07997 * 119.86524 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0772 -1.1982 0.1259 9 6 1.2613 -2.4933 -0.1739 10 1 0.4246 -2.3445 -0.8565 11 6 2.2075 -3.5489 -0.7493 12 17 1.2819 -5.0539 -1.1087 13 8 0.7696 -2.9345 1.0932 14 6 -0.4660 -3.5020 1.1124 15 6 -1.1371 -3.7366 -0.0849 16 6 -2.3871 -4.3110 -0.0723 17 6 -2.9859 -4.6591 1.1366 18 16 -4.5440 -5.3954 1.5002 19 6 -4.2065 -5.3434 3.1720 20 7 -3.0569 -4.8314 3.4030 21 6 -2.3234 -4.4304 2.3471 22 6 -1.0412 -3.8452 2.3144 23 1 -0.4849 -0.8372 -0.0685 24 1 2.6578 -3.1714 -1.6674 25 1 2.9910 -3.7687 -0.0241 26 1 -0.6757 -3.4684 -1.0238 27 1 -2.9060 -4.4917 -1.0021 28 1 -4.8789 -5.6983 3.9390 29 1 -0.5094 -3.6630 3.2366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230235006.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = 3.159719 kcal Electronic energy + Delta-G solvation = -17494.903609 eV Core-core repulsion = 14535.617505 eV Total energy + Delta-G solvation = -2959.286104 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13208 -38.49632 -35.72026 -35.18273 -33.37913 -30.78064 -29.70206 -28.71774 -24.91716 -24.78495 -22.67186 -22.15364 -20.35406 -18.40118 -17.56875 -16.90690 -15.96024 -15.63755 -14.85364 -14.31981 -14.18554 -13.91684 -13.72621 -13.59029 -13.38486 -12.80862 -12.28820 -12.21254 -11.89324 -11.44543 -11.01635 -10.88201 -10.81636 -10.44611 -10.29780 -9.95388 -9.68442 -9.46457 -9.34382 -8.97575 -8.83437 -8.06296 -7.30143 -6.85305 -4.67995 0.71393 1.53266 1.69177 1.96319 2.70364 2.81530 3.24011 3.27616 3.46108 3.87114 4.14639 4.23014 4.51494 4.96460 5.10349 5.35287 5.45354 5.50451 5.65683 5.71266 5.75414 5.98351 6.26678 6.35721 6.48610 6.54820 6.75601 6.96434 7.45894 7.82748 7.93978 8.31110 8.41996 9.11388 10.53658 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.005698 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.557798 B = 4912.869366 C = 5751.201047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.035 3.965 3 Si 1.076 2.924 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.600 4.600 8 H 0.067 0.933 9 C 0.174 3.826 10 H 0.055 0.945 11 C -0.029 4.029 12 Cl -0.218 7.218 13 O -0.308 6.308 14 C 0.175 3.825 15 C -0.161 4.161 16 C -0.044 4.044 17 C -0.217 4.217 18 S 0.061 5.939 19 C 0.062 3.938 20 N -0.464 5.464 21 C 0.110 3.890 22 C -0.130 4.130 23 H 0.275 0.725 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.198 0.802 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -8.238 -0.506 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.175 4.175 3 Si 0.902 3.098 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.636 4.636 8 H 0.085 0.915 9 C 0.121 3.879 10 H 0.073 0.927 11 C -0.092 4.092 12 Cl -0.192 7.192 13 O -0.221 6.221 14 C 0.124 3.876 15 C -0.182 4.182 16 C -0.066 4.066 17 C -0.334 4.334 18 S 0.311 5.689 19 C -0.243 4.243 20 N -0.177 5.177 21 C -0.008 4.008 22 C -0.153 4.153 23 H 0.086 0.914 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.161 0.839 27 H 0.144 0.856 28 H 0.215 0.785 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.593 -7.004 -0.283 8.967 hybrid contribution 0.852 -1.497 -0.079 1.724 sum -4.741 -8.501 -0.361 9.740 Atomic orbital electron populations 1.70801 1.07007 1.31813 1.40737 1.26214 0.96260 1.03371 0.91629 0.83435 0.75002 0.74301 0.77107 1.20264 1.20810 1.20733 1.21863 0.95500 0.89317 1.56935 0.91474 1.20859 0.93473 0.91148 0.82419 0.92715 1.25270 0.97188 0.83671 1.03087 1.98678 1.78778 1.45553 1.96173 1.86727 1.26471 1.70529 1.38387 1.18814 0.86946 0.89540 0.92262 1.21532 0.95424 1.02309 0.98957 1.19990 0.94307 0.97462 0.94861 1.23418 0.98850 1.12305 0.98848 1.83620 1.17334 1.62955 1.04962 1.27929 0.96473 1.00951 0.98972 1.66150 1.05468 1.12573 1.33557 1.18703 0.95498 1.00876 0.85722 1.19585 0.93027 1.05202 0.97461 0.91359 0.88129 0.89173 0.83876 0.85632 0.78514 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.22 13.63 55.43 0.76 -23.46 15 2 C 0.04 0.92 5.44 -17.82 -0.10 0.82 15 3 Si 1.08 22.70 29.91 -169.99 -5.08 17.62 15 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 7 C -0.60 -15.10 8.68 -34.44 -0.30 -15.40 15 8 H 0.07 1.64 7.82 -52.49 -0.41 1.23 15 9 C 0.17 3.96 1.66 -27.89 -0.05 3.91 15 10 H 0.06 1.29 4.34 -51.93 -0.23 1.07 15 11 C -0.03 -0.56 6.31 37.15 0.23 -0.32 15 12 Cl -0.22 -3.87 25.74 -51.86 -1.33 -5.21 15 13 O -0.31 -7.28 9.68 -19.66 -0.19 -7.47 15 14 C 0.17 3.77 6.21 -39.44 -0.24 3.53 15 15 C -0.16 -3.15 7.21 -39.45 -0.28 -3.44 15 16 C -0.04 -0.77 10.05 -39.42 -0.40 -1.16 15 17 C -0.22 -3.83 6.55 -38.56 -0.25 -4.09 15 18 S 0.06 0.82 23.17 -107.50 -2.49 -1.67 15 19 C 0.06 0.84 12.10 51.14 0.62 1.46 15 20 N -0.46 -8.19 10.57 -12.96 -0.14 -8.32 15 21 C 0.11 2.14 6.99 -84.97 -0.59 1.54 15 22 C -0.13 -2.71 10.03 -38.77 -0.39 -3.10 15 23 H 0.27 7.63 6.84 -40.82 -0.28 7.35 15 24 H 0.10 1.74 8.14 -51.93 -0.42 1.31 15 25 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 26 H 0.14 2.79 4.81 -52.49 -0.25 2.53 15 27 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 28 H 0.20 1.75 8.06 -52.49 -0.42 1.32 15 29 H 0.13 2.73 8.06 -52.49 -0.42 2.31 15 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -28.74 279.51 -8.10 -36.83 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -2.08 Total: 3.72 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.75 Total: -16.25 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.62 Total: -31.78 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.19 Total: -7.47 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.08 Total: 17.62 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Atomic # 17 Polarization: -3.87 SS G_CDS: -1.33 Total: -5.21 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.74 -8.10 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230235006.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.993 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds