Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47041 * 274.40351 * 3 2 1 5 5 H 1.48504 * 109.47052 * 34.40129 * 3 2 1 6 6 H 1.48501 * 109.47640 * 154.40140 * 3 2 1 7 7 C 1.37877 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99655 * 5.09604 * 7 2 1 9 9 C 1.50699 * 120.00356 * 185.09007 * 7 2 1 10 10 H 1.08999 * 109.47181 * 325.67595 * 9 7 2 11 11 C 1.53003 * 109.46750 * 85.67458 * 9 7 2 12 12 Cl 1.80310 * 109.46875 * 182.96792 * 11 9 7 13 13 O 1.42898 * 109.47239 * 205.67370 * 9 7 2 14 14 C 1.36063 * 116.99671 * 142.23820 * 13 9 7 15 15 C 1.39182 * 119.87462 * 2.32156 * 14 13 9 16 16 C 1.37729 * 120.63554 * 180.30098 * 15 14 13 17 17 C 1.39120 * 120.02219 * 359.45035 * 16 15 14 18 18 N 1.37895 * 133.33958 * 180.19183 * 17 16 15 19 19 H 0.97000 * 125.08229 * 0.32314 * 18 17 16 20 20 C 1.36878 * 109.84004 * 180.32185 * 18 17 16 21 21 C 1.34206 * 109.92743 * 359.97438 * 20 18 17 22 22 C 1.40589 * 119.53351 * 0.54203 * 17 16 15 23 23 C 1.38234 * 119.86992 * 182.34639 * 14 13 9 24 24 F 1.35095 * 120.21429 * 359.95034 * 23 14 13 25 25 H 0.96994 * 119.99734 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47005 * 302.96712 * 11 9 7 27 27 H 1.08990 * 109.47188 * 62.96994 * 11 9 7 28 28 H 1.07996 * 119.68366 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.98463 * 179.72364 * 16 15 14 30 30 H 1.07993 * 125.03359 * 179.97438 * 20 18 17 31 31 H 1.08003 * 126.49087 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4036 2.1001 -1.3960 5 1 1.4962 2.6240 0.7910 6 1 3.5902 1.4151 0.6049 7 6 2.0046 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0821 9 6 3.5071 -1.1966 0.1163 10 1 3.9125 -0.3239 -0.3957 11 6 3.9048 -1.1519 1.5931 12 17 5.7008 -1.0670 1.7295 13 8 4.0290 -2.3848 -0.4818 14 6 5.1952 -2.2676 -1.1728 15 6 5.8470 -1.0391 -1.2295 16 6 7.0251 -0.9013 -1.9295 17 6 7.5811 -1.9986 -2.5793 18 7 8.7203 -2.1728 -3.3365 19 1 9.3657 -1.4781 -3.5406 20 6 8.8042 -3.4727 -3.7572 21 6 7.7523 -4.1700 -3.3006 22 6 6.9262 -3.2415 -2.5246 23 6 5.7279 -3.3690 -1.8161 24 9 5.0949 -4.5612 -1.7601 25 1 -0.4849 0.8400 -0.0004 26 1 3.4628 -0.2728 2.0620 27 1 3.5446 -2.0505 2.0937 28 1 5.4225 -0.1847 -0.7234 29 1 7.5196 0.0579 -1.9703 30 1 9.5990 -3.8771 -4.3663 31 1 7.5520 -5.2172 -3.4734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230772941.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -30.275045 kcal Electronic energy + Delta-G solvation = -19853.321035 eV Core-core repulsion = 16462.205010 eV Total energy + Delta-G solvation = -3391.116026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.10017 -40.95772 -38.79771 -35.60509 -35.01223 -33.19939 -31.49969 -30.57220 -28.47133 -28.03179 -25.32152 -22.88659 -22.40549 -20.72632 -20.14522 -18.25440 -17.81422 -16.91246 -16.21562 -15.49079 -15.30271 -14.91812 -14.71453 -14.12715 -13.91509 -13.85764 -13.32238 -13.15136 -12.94590 -12.71181 -12.55286 -12.08134 -11.69454 -11.56918 -11.13647 -11.06777 -10.77317 -10.58621 -10.07945 -9.80278 -9.54749 -9.37859 -9.27355 -8.88816 -7.74807 -7.04842 -6.45178 -4.51238 1.22393 1.89369 2.79210 2.94821 3.06344 3.10210 3.15086 3.17762 3.95354 4.04002 4.06087 4.71629 4.86016 4.93368 5.10379 5.30699 5.33584 5.57177 5.63138 5.81470 5.91538 5.94560 6.03265 6.32537 6.41313 6.53923 6.67686 6.76530 6.80924 7.14480 7.22758 7.59519 7.90103 8.35135 8.70691 9.10919 10.65765 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.005869 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.744297 B = 4769.630886 C = 4916.875390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.086 3.914 3 Si 0.858 3.142 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.178 3.822 10 H 0.050 0.950 11 C -0.039 4.039 12 Cl -0.229 7.229 13 O -0.292 6.292 14 C 0.104 3.896 15 C -0.142 4.142 16 C -0.106 4.106 17 C 0.078 3.922 18 N -0.597 5.597 19 H 0.414 0.586 20 C 0.049 3.951 21 C -0.199 4.199 22 C -0.109 4.109 23 C 0.084 3.916 24 F -0.134 7.134 25 H 0.273 0.727 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.144 0.856 29 H 0.123 0.877 30 H 0.169 0.831 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.288 -0.921 -4.520 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.120 4.120 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.562 4.562 8 H 0.110 0.890 9 C 0.122 3.878 10 H 0.067 0.933 11 C -0.101 4.101 12 Cl -0.204 7.204 13 O -0.205 6.205 14 C 0.055 3.945 15 C -0.161 4.161 16 C -0.127 4.127 17 C -0.027 4.027 18 N -0.202 5.202 19 H 0.250 0.750 20 C -0.077 4.077 21 C -0.225 4.225 22 C -0.114 4.114 23 C 0.063 3.937 24 F -0.112 7.112 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.162 0.838 29 H 0.141 0.859 30 H 0.186 0.814 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.149 -0.937 -4.488 16.787 hybrid contribution 0.597 1.264 0.040 1.399 sum 16.746 0.327 -4.447 17.329 Atomic orbital electron populations 1.69843 1.06153 1.27848 1.46728 1.24907 0.94877 0.98724 0.93541 0.87134 0.80971 0.83954 0.79696 1.19193 1.20096 1.17940 1.20751 0.86701 0.96112 1.52622 0.88990 1.20860 0.95442 0.84033 0.87421 0.93289 1.26056 0.76514 1.05069 1.02506 1.98667 1.23823 1.99205 1.98662 1.86306 1.32844 1.37340 1.63975 1.18750 0.88704 0.92424 0.94573 1.21049 0.96081 0.97351 1.01633 1.19756 0.96688 0.96315 0.99935 1.17816 0.89737 0.95096 1.00077 1.41679 1.21631 1.10406 1.46442 0.74978 1.21708 1.00554 0.83494 1.01974 1.21523 0.96291 0.99305 1.05393 1.18740 0.95155 0.94679 1.02860 1.16074 0.92842 0.80528 1.04226 1.91429 1.81386 1.43310 1.95100 0.91654 0.88561 0.88545 0.83828 0.85893 0.81374 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.57 13.96 55.43 0.77 -23.80 16 2 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 19.01 26.38 -169.99 -4.48 14.53 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.24 5.98 56.52 0.34 -4.90 16 7 C -0.52 -14.01 9.23 -34.44 -0.32 -14.33 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 C 0.18 4.09 1.69 -27.88 -0.05 4.05 16 10 H 0.05 1.10 2.89 -51.93 -0.15 0.95 16 11 C -0.04 -0.79 5.96 37.16 0.22 -0.57 16 12 Cl -0.23 -4.28 25.85 -51.86 -1.34 -5.62 16 13 O -0.29 -6.85 9.53 -19.94 -0.19 -7.04 16 14 C 0.10 2.17 6.08 -39.23 -0.24 1.93 16 15 C -0.14 -2.60 7.23 -39.42 -0.28 -2.89 16 16 C -0.11 -1.63 10.06 -39.44 -0.40 -2.03 16 17 C 0.08 1.18 7.27 -83.92 -0.61 0.57 16 18 N -0.60 -6.55 6.08 -10.62 -0.06 -6.62 16 19 H 0.41 3.04 8.96 -40.82 -0.37 2.67 16 20 C 0.05 0.51 11.82 -16.72 -0.20 0.31 16 21 C -0.20 -2.72 11.08 -37.67 -0.42 -3.14 16 22 C -0.11 -1.87 6.35 -105.09 -0.67 -2.54 16 23 C 0.08 1.69 7.35 -39.00 -0.29 1.40 16 24 F -0.13 -2.80 17.11 2.25 0.04 -2.76 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 27 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 28 H 0.14 2.67 5.02 -52.49 -0.26 2.41 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -30.17 281.17 -6.82 -36.99 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -2.45 Total: 5.14 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.34 Total: -15.05 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.71 Total: -30.41 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.19 Total: -7.04 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.48 Total: 14.53 kcal Atomic # 17 Polarization: -4.28 SS G_CDS: -1.34 Total: -5.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.17 -6.82 -36.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230772941.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.715 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds