Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47041 * 274.40351 * 3 2 1 5 5 H 1.48504 * 109.47052 * 34.40129 * 3 2 1 6 6 H 1.48501 * 109.47640 * 154.40140 * 3 2 1 7 7 C 1.37877 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99655 * 5.09604 * 7 2 1 9 9 C 1.50699 * 120.00356 * 185.09007 * 7 2 1 10 10 H 1.08999 * 109.47181 * 325.67595 * 9 7 2 11 11 C 1.53003 * 109.46750 * 85.67458 * 9 7 2 12 12 Cl 1.80310 * 109.46875 * 182.96792 * 11 9 7 13 13 O 1.42898 * 109.47239 * 205.67370 * 9 7 2 14 14 C 1.36063 * 116.99671 * 142.23820 * 13 9 7 15 15 C 1.39182 * 119.87462 * 2.32156 * 14 13 9 16 16 C 1.37729 * 120.63554 * 180.30098 * 15 14 13 17 17 C 1.39120 * 120.02219 * 359.45035 * 16 15 14 18 18 N 1.37895 * 133.33958 * 180.19183 * 17 16 15 19 19 H 0.97000 * 125.08229 * 0.32314 * 18 17 16 20 20 C 1.36878 * 109.84004 * 180.32185 * 18 17 16 21 21 C 1.34206 * 109.92743 * 359.97438 * 20 18 17 22 22 C 1.40589 * 119.53351 * 0.54203 * 17 16 15 23 23 C 1.38234 * 119.86992 * 182.34639 * 14 13 9 24 24 F 1.35095 * 120.21429 * 359.95034 * 23 14 13 25 25 H 0.96994 * 119.99734 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47005 * 302.96712 * 11 9 7 27 27 H 1.08990 * 109.47188 * 62.96994 * 11 9 7 28 28 H 1.07996 * 119.68366 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.98463 * 179.72364 * 16 15 14 30 30 H 1.07993 * 125.03359 * 179.97438 * 20 18 17 31 31 H 1.08003 * 126.49087 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4036 2.1001 -1.3960 5 1 1.4962 2.6240 0.7910 6 1 3.5902 1.4151 0.6049 7 6 2.0046 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0821 9 6 3.5071 -1.1966 0.1163 10 1 3.9125 -0.3239 -0.3957 11 6 3.9048 -1.1519 1.5931 12 17 5.7008 -1.0670 1.7295 13 8 4.0290 -2.3848 -0.4818 14 6 5.1952 -2.2676 -1.1728 15 6 5.8470 -1.0391 -1.2295 16 6 7.0251 -0.9013 -1.9295 17 6 7.5811 -1.9986 -2.5793 18 7 8.7203 -2.1728 -3.3365 19 1 9.3657 -1.4781 -3.5406 20 6 8.8042 -3.4727 -3.7572 21 6 7.7523 -4.1700 -3.3006 22 6 6.9262 -3.2415 -2.5246 23 6 5.7279 -3.3690 -1.8161 24 9 5.0949 -4.5612 -1.7601 25 1 -0.4849 0.8400 -0.0004 26 1 3.4628 -0.2728 2.0620 27 1 3.5446 -2.0505 2.0937 28 1 5.4225 -0.1847 -0.7234 29 1 7.5196 0.0579 -1.9703 30 1 9.5990 -3.8771 -4.3663 31 1 7.5520 -5.2172 -3.4734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230772941.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -49.752566 kcal Electronic energy + Delta-G solvation = -19854.165644 eV Core-core repulsion = 16462.205010 eV Total energy + Delta-G solvation = -3391.960634 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.63317 -42.08461 -40.35440 -37.04892 -36.51131 -35.13389 -32.76018 -32.24698 -29.63676 -29.36455 -27.23742 -24.28373 -23.79765 -21.98550 -21.46516 -19.65685 -19.39456 -18.52391 -17.74819 -17.03139 -16.73357 -16.35718 -16.12893 -15.76261 -15.35555 -15.05947 -14.93694 -14.72443 -14.31600 -14.21144 -13.70958 -13.60059 -13.22104 -13.05382 -12.86179 -12.69124 -12.21442 -12.02266 -11.85803 -11.48286 -11.16956 -11.00214 -10.80226 -10.54149 -8.93347 -8.48945 -8.38684 -6.62992 -0.01870 0.55379 1.25909 1.31697 1.38429 1.41215 1.79877 2.18209 2.19849 2.44816 2.70896 2.88570 3.39582 3.78302 3.94100 4.06730 4.12354 4.14364 4.26753 4.30075 4.49406 4.70366 4.86850 4.89747 5.10378 5.15332 5.19569 5.35804 5.53936 5.67541 5.90503 6.07853 6.46771 6.71200 6.78512 7.05423 8.66823 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.005869 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.744297 B = 4769.630886 C = 4916.875390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.035 3.965 3 Si 0.924 3.076 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.226 1.226 7 C -0.543 4.543 8 H 0.037 0.963 9 C 0.185 3.815 10 H 0.060 0.940 11 C -0.036 4.036 12 Cl -0.205 7.205 13 O -0.324 6.324 14 C 0.075 3.925 15 C -0.164 4.164 16 C -0.082 4.082 17 C 0.072 3.928 18 N -0.576 5.576 19 H 0.437 0.563 20 C 0.095 3.905 21 C -0.242 4.242 22 C -0.128 4.128 23 C 0.047 3.953 24 F -0.153 7.153 25 H 0.278 0.722 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.226 0.774 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.884 1.068 -5.753 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.166 4.166 3 Si 0.744 3.256 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.149 1.149 7 C -0.580 4.580 8 H 0.056 0.944 9 C 0.130 3.870 10 H 0.078 0.922 11 C -0.099 4.099 12 Cl -0.179 7.179 13 O -0.238 6.238 14 C 0.028 3.972 15 C -0.183 4.183 16 C -0.103 4.103 17 C -0.035 4.035 18 N -0.182 5.182 19 H 0.278 0.722 20 C -0.033 4.033 21 C -0.267 4.267 22 C -0.133 4.133 23 C 0.026 3.974 24 F -0.132 7.132 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.159 0.841 29 H 0.182 0.818 30 H 0.242 0.758 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 20.794 1.053 -5.728 21.594 hybrid contribution -0.642 0.489 0.275 0.853 sum 20.152 1.542 -5.453 20.933 Atomic orbital electron populations 1.69984 1.08253 1.29281 1.48282 1.25797 0.95622 1.02726 0.92491 0.86090 0.80850 0.78381 0.80317 1.18506 1.19167 1.14887 1.20846 0.89146 0.94467 1.53526 0.94423 1.20648 0.92937 0.84521 0.88918 0.92237 1.25662 0.78124 1.05449 1.00646 1.98660 1.21455 1.99176 1.98560 1.86217 1.34886 1.37568 1.65169 1.19063 0.88399 0.94086 0.95670 1.21020 0.97606 0.96043 1.03654 1.20112 0.95019 0.97972 0.97171 1.17899 0.90926 0.94153 1.00504 1.41762 1.20415 1.11472 1.44525 0.72223 1.22512 0.99663 0.82249 0.98875 1.21808 0.97571 1.00073 1.07242 1.19164 0.94473 0.97031 1.02675 1.16549 0.94565 0.79980 1.06261 1.91358 1.82047 1.44341 1.95464 0.91230 0.87456 0.89025 0.84141 0.81827 0.75788 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 13.96 21.45 0.30 -54.02 16 2 C 0.04 1.94 5.47 84.65 0.46 2.40 16 3 Si 0.92 38.91 26.38 68.60 1.81 40.72 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.23 -8.39 5.98 99.48 0.59 -7.80 16 7 C -0.54 -30.74 9.23 25.60 0.24 -30.50 16 8 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 9 C 0.19 8.77 1.69 29.85 0.05 8.82 16 10 H 0.06 2.66 2.89 -2.39 -0.01 2.66 16 11 C -0.04 -1.47 5.96 71.98 0.43 -1.04 16 12 Cl -0.20 -7.36 25.85 -2.72 -0.07 -7.43 16 13 O -0.32 -16.11 9.53 -94.27 -0.90 -17.01 16 14 C 0.08 3.23 6.08 22.50 0.14 3.36 16 15 C -0.16 -5.83 7.23 22.38 0.16 -5.67 16 16 C -0.08 -2.26 10.06 22.36 0.22 -2.03 16 17 C 0.07 1.94 7.27 38.98 0.28 2.22 16 18 N -0.58 -9.47 6.08 -187.52 -1.14 -10.61 16 19 H 0.44 3.53 8.96 -92.71 -0.83 2.70 16 20 C 0.09 1.45 11.82 82.98 0.98 2.43 16 21 C -0.24 -6.01 11.08 23.51 0.26 -5.75 16 22 C -0.13 -4.25 6.35 -20.17 -0.13 -4.38 16 23 C 0.05 1.96 7.35 22.64 0.17 2.12 16 24 F -0.15 -6.88 17.11 44.97 0.77 -6.11 16 25 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.11 4.12 6.91 -2.39 -0.02 4.11 16 27 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 28 H 0.14 4.99 5.02 -2.91 -0.01 4.98 16 29 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.23 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -72.41 281.17 4.29 -68.12 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.26 Total: 14.37 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.27 Total: -28.02 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.84 Total: -64.63 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.90 Total: -17.01 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.77 Total: -6.11 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.81 Total: 40.72 kcal Atomic # 17 Polarization: -7.36 SS G_CDS: -0.07 Total: -7.43 kcal Total: -72.41 4.29 -68.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230772941.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.366 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds