Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47210 * 2 1 4 4 C 1.46903 * 110.99949 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46976 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.46849 * 181.08202 * 5 4 3 7 7 C 1.46901 * 110.99954 * 67.05153 * 6 5 4 8 8 C 1.50701 * 109.46630 * 199.99148 * 7 6 5 9 9 H 1.07997 * 120.00575 * 5.24502 * 8 7 6 10 10 C 1.37876 * 119.99394 * 185.24615 * 8 7 6 11 11 N 1.31518 * 119.99738 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00570 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47199 * 270.00308 * 12 10 8 14 14 H 1.48502 * 109.46775 * 30.00430 * 12 10 8 15 15 H 1.48496 * 109.47098 * 149.99829 * 12 10 8 16 16 C 1.46893 * 110.99593 * 191.00567 * 6 5 4 17 17 C 1.53016 * 109.47240 * 288.22937 * 16 6 5 18 18 C 1.52988 * 109.45965 * 164.04717 * 17 16 6 19 19 C 1.52985 * 109.51199 * 315.99304 * 18 17 16 20 20 C 1.53009 * 109.47204 * 112.93597 * 19 18 17 21 21 C 1.53005 * 109.42894 * 284.04176 * 20 19 18 22 22 C 1.52982 * 109.48571 * 75.96471 * 21 20 19 23 23 C 1.53003 * 109.50432 * 247.06444 * 22 21 20 24 24 H 1.09008 * 109.46876 * 300.00150 * 1 2 3 25 25 H 1.08996 * 109.47313 * 60.00057 * 1 2 3 26 26 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47182 * 239.99462 * 2 1 3 28 28 H 1.09012 * 109.46943 * 119.99993 * 2 1 3 29 29 H 1.00897 * 111.00034 * 56.04958 * 3 2 1 30 30 H 1.08998 * 109.47012 * 60.00030 * 4 3 2 31 31 H 1.09001 * 109.46865 * 299.99728 * 4 3 2 32 32 H 1.08998 * 109.46885 * 61.08349 * 5 4 3 33 33 H 1.09003 * 109.46872 * 301.07761 * 5 4 3 34 34 H 1.08996 * 109.47199 * 79.99147 * 7 6 5 35 35 H 1.09004 * 109.47206 * 319.99163 * 7 6 5 36 36 H 0.97005 * 119.99992 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.47313 * 48.23338 * 16 6 5 38 38 H 1.08994 * 109.47225 * 284.04225 * 17 16 6 39 39 H 1.09003 * 109.46953 * 44.05322 * 17 16 6 40 40 H 1.09000 * 109.46539 * 195.97670 * 18 17 16 41 41 H 1.09011 * 109.45875 * 75.99986 * 18 17 16 42 42 H 1.08997 * 109.47307 * 352.93159 * 19 18 17 43 43 H 1.09008 * 109.46983 * 232.93589 * 19 18 17 44 44 H 1.09003 * 109.47618 * 164.05423 * 20 19 18 45 45 H 1.09001 * 109.47914 * 44.03238 * 20 19 18 46 46 H 1.08998 * 109.47027 * 315.95494 * 21 20 19 47 47 H 1.09000 * 109.46596 * 195.96305 * 21 20 19 48 48 H 1.08994 * 109.46797 * 127.05230 * 22 21 20 49 49 H 1.09002 * 109.46613 * 7.06738 * 22 21 20 50 50 H 1.08998 * 109.47147 * 284.01335 * 23 22 21 51 51 H 1.08995 * 109.47395 * 164.00621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9595 2.8797 -0.0012 6 7 5.4278 2.9189 -0.0280 7 6 5.9450 2.4054 -1.3035 8 6 7.3862 1.9990 -1.1339 9 1 7.8450 2.0310 -0.1567 10 6 8.1191 1.5863 -2.2264 11 7 9.3767 1.2311 -2.0784 12 14 7.3255 1.5303 -3.9165 13 1 6.7157 0.1937 -4.1331 14 1 6.2733 2.5745 -4.0041 15 1 8.3566 1.7783 -4.9560 16 6 5.9229 4.2772 0.2322 17 6 5.6384 5.1650 -0.9811 18 6 5.7790 6.6350 -0.5812 19 6 5.0936 6.8657 0.7669 20 6 6.1470 7.2064 1.8230 21 6 6.8857 5.9313 2.2348 22 6 7.8787 5.5403 1.1387 23 6 7.4308 4.2302 0.4874 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6442 1.9012 0.7814 30 1 3.8647 0.9203 -0.8908 31 1 3.8654 0.9200 0.8892 32 1 3.5991 3.3787 0.8983 33 1 3.5664 3.3885 -0.8814 34 1 5.8738 3.1831 -2.0639 35 1 5.3574 1.5407 -1.6120 36 1 9.8925 0.9411 -2.8471 37 1 5.4188 4.6861 1.1079 38 1 6.3493 4.9347 -1.7745 39 1 4.6246 4.9806 -1.3365 40 1 5.3114 7.2639 -1.3388 41 1 6.8359 6.8896 -0.4996 42 1 4.5611 5.9620 1.0631 43 1 4.3872 7.6912 0.6787 44 1 5.6595 7.6418 2.6953 45 1 6.8584 7.9212 1.4095 46 1 6.1665 5.1249 2.3781 47 1 7.4238 6.1080 3.1661 48 1 8.8687 5.4090 1.5753 49 1 7.9156 6.3266 0.3847 50 1 7.6612 3.3971 1.1514 51 1 7.9555 4.0967 -0.4586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235662888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = 3.517530 kcal Electronic energy + Delta-G solvation = -24421.256197 eV Core-core repulsion = 21355.407708 eV Total energy + Delta-G solvation = -3065.848489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.58521 -36.99538 -35.59557 -32.62830 -32.24268 -31.87199 -30.22704 -28.11939 -26.58822 -25.50501 -24.20153 -22.34982 -21.97250 -21.37861 -20.71133 -19.77908 -18.18111 -16.71779 -16.01696 -15.80326 -15.22621 -14.61580 -14.42859 -14.14299 -13.88516 -13.72591 -13.56706 -13.33344 -13.16376 -12.84932 -12.64213 -12.42711 -11.98868 -11.85832 -11.79815 -11.43253 -11.30494 -11.18819 -11.07133 -10.93104 -10.82846 -10.58621 -10.43576 -10.37974 -10.29477 -10.01958 -9.92269 -9.83123 -9.29738 -9.24838 -8.89398 -8.46265 -8.28261 -7.22027 -5.98693 -3.92118 3.30504 3.38501 3.41283 4.18009 4.46758 4.87843 5.02385 5.08669 5.13488 5.18188 5.22967 5.31115 5.42243 5.46199 5.52268 5.57588 5.63080 5.65145 5.68311 5.77350 5.80841 5.85289 5.97268 5.99243 6.03411 6.09342 6.14823 6.21379 6.28158 6.31476 6.34041 6.41272 6.42036 6.48806 6.55724 6.63309 6.69643 6.76783 6.89399 7.01321 7.03567 7.16733 7.25938 7.49041 7.52153 7.74445 8.00827 8.17952 8.74767 9.13416 9.63970 11.13711 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009395 B = 0.007323 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.654495 B = 3822.719698 C = 5998.894982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.693 5.693 4 C 0.061 3.939 5 C 0.059 3.941 6 N -0.524 5.524 7 C 0.150 3.850 8 C -0.497 4.497 9 H 0.090 0.910 10 C 0.067 3.933 11 N -0.902 5.902 12 Si 0.864 3.136 13 H -0.278 1.278 14 H -0.268 1.268 15 H -0.288 1.288 16 C 0.087 3.913 17 C -0.150 4.150 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.102 4.102 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.334 0.666 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.001 0.999 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 7.311 6.399 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 N -0.324 5.324 4 C -0.068 4.068 5 C -0.070 4.070 6 N -0.247 5.247 7 C 0.024 3.976 8 C -0.535 4.535 9 H 0.108 0.892 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.692 3.308 13 H -0.204 1.204 14 H -0.192 1.192 15 H -0.214 1.214 16 C -0.021 4.021 17 C -0.189 4.189 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.139 4.139 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.151 0.849 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.019 0.981 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.657 6.973 5.981 14.841 hybrid contribution -0.437 0.085 -0.862 0.970 sum -12.094 7.058 5.119 14.909 Atomic orbital electron populations 1.21766 0.95304 1.01408 1.02153 1.21889 0.95205 0.89845 1.00631 1.60480 1.09072 1.13311 1.49585 1.22002 0.85550 0.97584 1.01703 1.21907 0.90183 0.95272 0.99658 1.62198 1.04862 1.21152 1.36467 1.20384 0.96845 0.94269 0.86123 1.21231 0.93433 1.42072 0.96808 0.89238 1.24875 0.94745 0.95484 0.98291 1.69888 1.07910 1.45942 1.30463 0.87032 0.79464 0.78876 0.85432 1.20443 1.19240 1.21423 1.22068 0.96966 0.86846 0.96206 1.22288 1.01158 0.94862 1.00554 1.21803 1.01303 0.96830 0.96075 1.21807 0.97843 1.01160 0.95492 1.21698 0.97917 0.97686 0.98094 1.21837 0.98916 0.97520 0.98235 1.21947 0.97947 0.99265 0.97517 1.21840 0.94384 0.95002 1.02688 0.93036 0.91964 0.92431 0.91070 0.95436 0.84873 0.90413 0.94445 0.92521 0.95024 0.98102 0.96286 0.92894 0.89848 0.91040 0.93104 0.93271 0.90837 0.91079 0.93100 0.92975 0.92211 0.90850 0.93099 0.92858 0.91798 0.91435 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.17 37.16 0.38 -1.07 16 2 C 0.05 0.65 6.40 -3.83 -0.02 0.63 16 3 N -0.69 -9.49 6.50 -113.77 -0.74 -10.23 16 4 C 0.06 0.99 5.70 -3.82 -0.02 0.97 16 5 C 0.06 0.99 4.84 -3.82 -0.02 0.98 16 6 N -0.52 -10.39 4.45 -228.06 -1.01 -11.40 16 7 C 0.15 3.49 3.47 -4.97 -0.02 3.47 16 8 C -0.50 -13.39 7.34 -34.44 -0.25 -13.65 16 9 H 0.09 2.61 6.01 -52.49 -0.32 2.29 16 10 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 11 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 12 Si 0.86 21.42 27.58 -169.99 -4.69 16.73 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.45 6.39 56.52 0.36 -6.09 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 C 0.09 1.54 1.58 -67.70 -0.11 1.43 16 17 C -0.15 -2.56 3.86 -26.73 -0.10 -2.66 16 18 C -0.12 -1.72 5.48 -26.74 -0.15 -1.87 16 19 C -0.13 -1.57 5.47 -26.73 -0.15 -1.71 16 20 C -0.12 -1.37 5.59 -26.72 -0.15 -1.52 16 21 C -0.13 -1.70 5.47 -26.74 -0.15 -1.85 16 22 C -0.13 -2.00 5.48 -26.74 -0.15 -2.14 16 23 C -0.10 -1.94 3.49 -26.72 -0.09 -2.03 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.33 4.01 8.73 -39.29 -0.34 3.67 16 30 H 0.08 1.45 6.25 -51.93 -0.32 1.13 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 33 H 0.03 0.56 6.85 -51.93 -0.36 0.20 16 34 H 0.00 0.03 4.39 -51.93 -0.23 -0.20 16 35 H 0.02 0.46 5.61 -51.93 -0.29 0.17 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 37 H 0.08 1.35 2.57 -51.93 -0.13 1.21 16 38 H 0.07 1.41 6.66 -51.93 -0.35 1.07 16 39 H 0.05 0.88 6.52 -51.93 -0.34 0.54 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.05 4.69 -51.92 -0.24 0.80 16 42 H 0.07 0.94 5.47 -51.93 -0.28 0.66 16 43 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 46 H 0.07 1.04 5.47 -51.93 -0.28 0.76 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.96 4.69 -51.93 -0.24 0.71 16 50 H 0.07 1.44 7.12 -51.93 -0.37 1.07 16 51 H 0.09 2.06 6.08 -51.93 -0.32 1.74 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -28.26 353.26 -10.48 -38.74 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -9.04 Total: 6.39 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.09 Total: -19.24 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.98 Total: -47.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.69 Total: 16.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.26 -10.48 -38.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235662888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.254 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds