Wall clock time and date at job start Tue Mar 31 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 111.00300 * 2 1 4 4 C 1.53006 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46954 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46721 * 180.88175 * 5 4 3 7 7 C 1.46900 * 111.00171 * 67.01792 * 6 5 4 8 8 C 1.50711 * 109.47314 * 199.99290 * 7 6 5 9 9 H 1.07996 * 119.99676 * 5.24481 * 8 7 6 10 10 C 1.37869 * 120.00129 * 185.24776 * 8 7 6 11 11 N 1.31516 * 120.00190 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 120.00048 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47241 * 270.00277 * 12 10 8 14 14 H 1.48500 * 109.47071 * 30.00037 * 12 10 8 15 15 H 1.48498 * 109.47040 * 150.00270 * 12 10 8 16 16 C 1.46903 * 111.00098 * 190.96723 * 6 5 4 17 17 C 1.53008 * 109.47606 * 288.20676 * 16 6 5 18 18 C 1.52988 * 109.46604 * 164.04079 * 17 16 6 19 19 C 1.52981 * 109.51100 * 315.99085 * 18 17 16 20 20 C 1.53006 * 109.47347 * 112.92917 * 19 18 17 21 21 C 1.52994 * 109.43480 * 284.04802 * 20 19 18 22 22 C 1.52986 * 109.49182 * 75.95721 * 21 20 19 23 23 C 1.52993 * 109.50944 * 247.06863 * 22 21 20 24 24 H 1.09008 * 109.47133 * 59.99423 * 1 2 3 25 25 H 1.08994 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46883 * 300.00411 * 1 2 3 27 27 H 1.00906 * 110.99931 * 236.04533 * 2 1 3 28 28 H 1.08999 * 109.47537 * 60.00360 * 3 2 1 29 29 H 1.09004 * 109.47564 * 300.00005 * 3 2 1 30 30 H 1.09006 * 109.46828 * 60.00474 * 4 3 2 31 31 H 1.08991 * 109.47092 * 300.00129 * 4 3 2 32 32 H 1.08995 * 109.47250 * 60.88587 * 5 4 3 33 33 H 1.08999 * 109.47373 * 300.87881 * 5 4 3 34 34 H 1.08998 * 109.47180 * 79.99412 * 7 6 5 35 35 H 1.08999 * 109.47033 * 319.98709 * 7 6 5 36 36 H 0.97000 * 119.99858 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.46984 * 48.20568 * 16 6 5 38 38 H 1.09002 * 109.46980 * 284.04324 * 17 16 6 39 39 H 1.09001 * 109.47296 * 44.04085 * 17 16 6 40 40 H 1.09004 * 109.46701 * 195.97460 * 18 17 16 41 41 H 1.09005 * 109.45737 * 75.99384 * 18 17 16 42 42 H 1.09006 * 109.46867 * 352.93516 * 19 18 17 43 43 H 1.09004 * 109.47203 * 232.93462 * 19 18 17 44 44 H 1.09000 * 109.47662 * 164.05177 * 20 19 18 45 45 H 1.09008 * 109.47886 * 44.04030 * 20 19 18 46 46 H 1.09001 * 109.46860 * 315.95696 * 21 20 19 47 47 H 1.08998 * 109.46760 * 195.96229 * 21 20 19 48 48 H 1.08997 * 109.46769 * 127.05006 * 22 21 20 49 49 H 1.09002 * 109.46270 * 7.07509 * 22 21 20 50 50 H 1.09006 * 109.47308 * 284.01221 * 23 22 21 51 51 H 1.08999 * 109.47638 * 164.00458 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5250 1.3304 0.0006 5 6 4.0733 2.7588 0.0000 6 7 5.5416 2.7195 -0.0207 7 6 6.0359 2.1764 -1.2930 8 6 7.4527 1.6939 -1.1167 9 1 7.9085 1.7035 -0.1376 10 6 8.1670 1.2404 -2.2052 11 7 9.4036 0.8198 -2.0514 12 14 7.3784 1.2232 -3.8985 13 1 6.6990 -0.0794 -4.1151 14 1 6.3838 2.3219 -3.9925 15 1 8.4256 1.4136 -4.9341 16 6 6.1076 4.0501 0.2389 17 6 5.8764 4.9490 -0.9776 18 6 6.0937 6.4103 -0.5803 19 6 5.4154 6.6805 0.7641 20 6 6.4807 6.9668 1.8244 21 6 7.1484 5.6553 2.2423 22 6 8.1239 5.2089 1.1517 23 6 7.6097 3.9231 0.5012 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8306 -0.5262 -0.7814 28 1 1.6461 1.8947 0.8900 29 1 1.6460 1.8948 -0.8900 30 1 3.8748 0.8070 -0.8892 31 1 3.8740 0.8072 0.8908 32 1 3.7364 3.2777 0.8973 33 1 3.7115 3.2865 -0.8824 34 1 6.0095 2.9551 -2.0552 35 1 5.4044 1.3435 -1.6022 36 1 9.9060 0.5004 -2.8172 37 1 5.6221 4.4875 1.1113 38 1 6.5775 4.6790 -1.7673 39 1 4.8559 4.8181 -1.3374 40 1 5.6638 7.0614 -1.3414 41 1 7.1621 6.6082 -0.4943 42 1 4.8340 5.8071 1.0598 43 1 4.7546 7.5424 0.6709 44 1 6.0132 7.4299 2.6934 45 1 7.2312 7.6417 1.4127 46 1 6.3864 4.8887 2.3839 47 1 7.6908 5.8051 3.1758 48 1 9.1035 5.0260 1.5932 49 1 8.2063 5.9903 0.3962 50 1 7.7922 3.0804 1.1681 51 1 8.1307 3.7595 -0.4421 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235664744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:30 Heat of formation + Delta-G solvation = 3.065426 kcal Electronic energy + Delta-G solvation = -24402.469091 eV Core-core repulsion = 21336.600997 eV Total energy + Delta-G solvation = -3065.868094 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.58599 -36.95768 -35.74074 -32.70652 -32.28844 -32.08841 -30.10535 -27.91012 -26.16611 -25.49445 -24.41285 -22.74767 -22.02600 -21.19178 -20.69515 -19.72287 -18.18341 -16.70133 -16.16715 -15.73337 -15.17388 -14.73489 -14.47028 -14.14318 -13.89066 -13.73733 -13.67049 -13.39129 -13.30388 -12.85609 -12.67791 -12.42863 -12.02552 -11.84969 -11.77934 -11.48174 -11.31400 -11.17198 -10.96873 -10.85192 -10.78015 -10.52778 -10.41005 -10.34047 -10.28589 -10.00809 -9.88875 -9.81695 -9.29424 -9.23734 -8.88858 -8.47547 -8.45352 -7.20341 -5.98074 -3.91181 3.28974 3.37013 3.38398 4.20086 4.46124 4.77191 4.96750 5.11555 5.13044 5.17465 5.29143 5.31958 5.37502 5.44598 5.53690 5.58834 5.61289 5.64685 5.68000 5.75096 5.76251 5.77692 5.88042 5.94593 5.98453 6.06883 6.16213 6.21456 6.28939 6.33988 6.37599 6.46967 6.51216 6.54541 6.64728 6.68276 6.69008 6.79385 6.89660 6.99206 7.02549 7.05558 7.26557 7.33475 7.50827 7.75320 8.01880 8.20018 8.75931 9.14760 9.64555 11.14508 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009416 B = 0.007240 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.029067 B = 3866.323003 C = 6038.352912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.696 5.696 3 C 0.060 3.940 4 C -0.115 4.115 5 C 0.058 3.942 6 N -0.522 5.522 7 C 0.150 3.850 8 C -0.496 4.496 9 H 0.090 0.910 10 C 0.067 3.933 11 N -0.902 5.902 12 Si 0.864 3.136 13 H -0.278 1.278 14 H -0.269 1.269 15 H -0.288 1.288 16 C 0.086 3.914 17 C -0.149 4.149 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.102 4.102 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.343 0.657 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.019 0.981 34 H -0.001 1.001 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.068 0.932 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 8.622 4.755 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.327 5.327 3 C -0.069 4.069 4 C -0.153 4.153 5 C -0.071 4.071 6 N -0.244 5.244 7 C 0.024 3.976 8 C -0.534 4.534 9 H 0.108 0.892 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.692 3.308 13 H -0.204 1.204 14 H -0.194 1.194 15 H -0.214 1.214 16 C -0.022 4.022 17 C -0.188 4.188 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.139 4.139 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.017 0.983 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.611 8.145 5.714 15.291 hybrid contribution -0.867 0.707 -2.753 2.972 sum -12.478 8.852 2.961 15.583 Atomic orbital electron populations 1.22175 0.88311 1.01566 1.00109 1.60383 1.07238 1.14811 1.50222 1.21997 0.96113 0.88909 0.99924 1.21586 0.92237 0.97593 1.03872 1.21946 0.90335 0.95749 0.99061 1.62229 1.03765 1.21918 1.36529 1.20378 0.96995 0.94077 0.86179 1.21236 0.95343 1.39965 0.96852 0.89191 1.24873 0.94774 0.95540 0.98218 1.69884 1.09539 1.44218 1.30555 0.87037 0.79400 0.78761 0.85600 1.20438 1.19417 1.21438 1.22084 0.96737 0.87301 0.96109 1.22288 1.00944 0.94962 1.00638 1.21805 1.01411 0.96723 0.96089 1.21810 0.97955 1.01057 0.95502 1.21694 0.98044 0.97595 0.98053 1.21838 0.99339 0.97111 0.98248 1.21945 0.98011 0.99177 0.97536 1.21839 0.94191 0.95233 1.02663 0.96378 0.91636 0.91891 0.83982 0.91317 0.95799 0.91545 0.90272 0.92223 0.96264 0.98334 0.96242 0.92903 0.89818 0.91056 0.93312 0.93336 0.90792 0.91057 0.93140 0.92961 0.92229 0.90779 0.93069 0.92849 0.91855 0.91357 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.70 60.06 0.64 0.93 16 2 N -0.70 -8.80 6.86 -121.13 -0.83 -9.63 16 3 C 0.06 0.79 5.69 -3.82 -0.02 0.77 16 4 C -0.11 -1.82 5.48 -26.73 -0.15 -1.97 16 5 C 0.06 0.97 4.58 -3.83 -0.02 0.95 16 6 N -0.52 -10.33 4.45 -228.07 -1.01 -11.35 16 7 C 0.15 3.47 3.47 -4.97 -0.02 3.45 16 8 C -0.50 -13.35 7.34 -34.44 -0.25 -13.60 16 9 H 0.09 2.63 6.01 -52.49 -0.32 2.31 16 10 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 11 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 12 Si 0.86 21.26 27.58 -169.99 -4.69 16.58 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.41 6.39 56.52 0.36 -6.05 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 16 C 0.09 1.51 1.58 -67.70 -0.11 1.41 16 17 C -0.15 -2.53 3.86 -26.73 -0.10 -2.64 16 18 C -0.12 -1.71 5.48 -26.75 -0.15 -1.86 16 19 C -0.13 -1.56 5.47 -26.74 -0.15 -1.71 16 20 C -0.12 -1.37 5.59 -26.73 -0.15 -1.52 16 21 C -0.13 -1.71 5.47 -26.74 -0.15 -1.86 16 22 C -0.13 -2.00 5.48 -26.74 -0.15 -2.15 16 23 C -0.10 -1.95 3.49 -26.73 -0.09 -2.04 16 24 H 0.02 0.17 8.14 -51.92 -0.42 -0.25 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.34 4.17 8.82 -39.29 -0.35 3.83 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.17 6.26 -51.93 -0.32 0.84 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 33 H 0.02 0.32 6.85 -51.93 -0.36 -0.03 16 34 H 0.00 -0.02 4.39 -51.93 -0.23 -0.25 16 35 H 0.02 0.46 5.61 -51.93 -0.29 0.17 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.08 1.35 2.57 -51.93 -0.13 1.22 16 38 H 0.07 1.40 6.66 -51.93 -0.35 1.05 16 39 H 0.05 0.82 6.52 -51.93 -0.34 0.48 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.05 4.69 -51.93 -0.24 0.81 16 42 H 0.07 0.94 5.47 -51.93 -0.28 0.65 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.69 7.47 -51.92 -0.39 0.30 16 46 H 0.07 1.06 5.47 -51.93 -0.28 0.78 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.95 4.69 -51.93 -0.24 0.71 16 50 H 0.07 1.46 7.13 -51.93 -0.37 1.09 16 51 H 0.09 2.05 6.08 -51.93 -0.32 1.73 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -28.48 353.03 -10.43 -38.92 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -9.04 Total: 6.54 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -0.95 Total: -20.07 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.07 Total: -47.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.69 Total: 16.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.48 -10.43 -38.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235664744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.981 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds