Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39584 * 120.45514 * 352.03894 * 3 2 1 5 5 C 1.37707 * 120.18418 * 180.02562 * 4 3 2 6 6 C 1.39821 * 121.17292 * 359.97106 * 5 4 3 7 7 C 1.48309 * 119.53684 * 180.02562 * 6 5 4 8 8 C 1.39393 * 120.10995 * 180.29703 * 7 6 5 9 9 C 1.37976 * 119.88507 * 180.25313 * 8 7 6 10 10 C 1.38460 * 120.11091 * 359.45184 * 9 8 7 11 11 Cl 1.73596 * 119.88639 * 180.25468 * 10 9 8 12 12 C 1.38452 * 120.22329 * 0.27352 * 10 9 8 13 13 C 1.37976 * 120.11340 * 0.02562 * 12 10 9 14 14 C 1.38607 * 120.92461 * 0.27927 * 6 5 4 15 15 C 1.40598 * 119.73551 * 359.47567 * 14 6 5 16 16 C 1.40843 * 120.55742 * 180.24878 * 15 14 6 17 17 H 1.07999 * 120.00235 * 204.65744 * 16 15 14 18 18 C 1.40235 * 119.99874 * 24.64803 * 16 15 14 19 19 N 1.30661 * 119.99712 * 17.30476 * 18 16 15 20 20 Si 1.86799 * 120.00103 * 197.30297 * 18 16 15 21 21 H 1.48499 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47147 * 120.00420 * 20 18 16 23 23 H 1.48497 * 109.46823 * 240.00187 * 20 18 16 24 24 H 1.08001 * 119.90819 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.41405 * 179.97438 * 5 4 3 26 26 H 1.07998 * 120.05745 * 0.02562 * 8 7 6 27 27 H 1.07996 * 119.94649 * 179.73051 * 9 8 7 28 28 H 1.08004 * 119.93877 * 180.02562 * 12 10 9 29 29 H 1.08004 * 120.05402 * 180.02562 * 13 12 10 30 30 H 1.08007 * 120.12950 * 179.72559 * 14 6 5 31 31 H 0.96999 * 119.99661 * 184.50840 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2761 -1.1907 0.1666 5 6 4.6532 -1.1836 0.1663 6 6 5.3707 0.0049 0.0001 7 6 6.8534 -0.0294 0.0050 8 6 7.5807 1.1491 -0.1536 9 6 8.9599 1.1111 -0.1535 10 6 9.6216 -0.0934 0.0150 11 17 11.3571 -0.1335 0.0207 12 6 8.9038 -1.2659 0.1785 13 6 7.5243 -1.2395 0.1738 14 6 4.7157 1.2154 -0.1640 15 6 3.3103 1.2520 -0.1750 16 6 2.6271 2.4717 -0.3458 17 1 1.6202 2.5837 0.0284 18 6 3.2543 3.5409 -1.0015 19 7 4.3092 3.3249 -1.7417 20 14 2.5817 5.2738 -0.8168 21 1 1.3890 5.2502 0.0675 22 1 3.6234 6.1482 -0.2206 23 1 2.1977 5.8005 -2.1511 24 1 2.7425 -2.1207 0.2962 25 1 5.1884 -2.1125 0.2966 26 1 7.0655 2.0899 -0.2799 27 1 9.5243 2.0230 -0.2806 28 1 9.4246 -2.2029 0.3100 29 1 6.9653 -2.1547 0.3019 30 1 5.2828 2.1264 -0.2870 31 1 4.7817 4.0714 -2.1421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088187.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = 50.160308 kcal Electronic energy + Delta-G solvation = -17996.971918 eV Core-core repulsion = 15040.113056 eV Total energy + Delta-G solvation = -2956.858862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.26960 -37.57734 -36.30453 -35.15739 -34.22412 -31.82286 -31.03560 -29.95023 -28.25077 -25.94724 -23.36616 -22.78322 -20.78784 -20.69972 -17.99418 -17.22831 -16.87198 -15.74313 -15.06979 -14.98015 -14.11580 -13.75352 -13.46903 -13.41184 -13.38245 -12.82787 -12.73715 -12.48674 -11.90296 -11.75721 -11.68230 -11.52311 -11.31560 -11.22625 -11.21023 -10.84643 -10.75123 -10.53452 -10.10400 -9.75813 -9.58556 -8.82936 -8.79158 -7.87120 -7.36023 -7.12351 -4.80634 1.04346 1.55190 2.25416 2.26457 2.56665 2.88609 2.94362 2.99182 3.64682 3.75790 3.86296 4.32759 4.38370 4.99474 5.05886 5.20533 5.34139 5.40736 5.57780 5.62199 5.86262 5.91218 6.13652 6.28802 6.41579 6.46536 6.57360 6.64825 6.80759 6.89139 7.03824 7.14268 7.38629 7.56558 7.66302 7.77865 8.10682 8.33681 8.43663 8.76449 9.66672 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.004817 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.185412 B = 5810.993817 C = 7354.279390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.299 3.701 3 C -0.183 4.183 4 C -0.028 4.028 5 C -0.235 4.235 6 C -0.026 4.026 7 C -0.011 4.011 8 C -0.101 4.101 9 C -0.110 4.110 10 C -0.050 4.050 11 Cl -0.089 7.089 12 C -0.112 4.112 13 C -0.108 4.108 14 C -0.138 4.138 15 C 0.148 3.852 16 C -0.426 4.426 17 H 0.087 0.913 18 C 0.077 3.923 19 N -0.764 5.764 20 Si 0.913 3.087 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.269 1.269 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.623 -2.039 1.885 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.011 4.011 3 C -0.190 4.190 4 C -0.049 4.049 5 C -0.255 4.255 6 C -0.027 4.027 7 C -0.011 4.011 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.076 4.076 11 Cl -0.060 7.060 12 C -0.131 4.131 13 C -0.126 4.126 14 C -0.157 4.157 15 C 0.142 3.858 16 C -0.454 4.454 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.387 5.387 20 Si 0.736 3.264 21 H -0.179 1.179 22 H -0.190 1.190 23 H -0.194 1.194 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.158 0.842 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.151 -1.929 1.666 10.466 hybrid contribution 0.461 0.758 -0.086 0.891 sum 10.612 -1.172 1.581 10.793 Atomic orbital electron populations 1.81026 1.12746 1.09982 1.14975 1.25797 0.92736 0.91350 0.91192 1.16992 0.83268 0.94411 1.24281 1.20384 0.93581 0.94964 0.95935 1.20135 0.93068 0.96313 1.15961 1.18473 0.89419 0.94450 1.00370 1.19243 0.93709 0.92599 0.95563 1.21408 0.92566 0.99198 0.98698 1.20946 0.94525 0.96390 1.00973 1.20889 0.83414 0.95632 1.07703 1.98335 1.11552 1.98921 1.97229 1.20898 0.94035 0.96748 1.01412 1.21268 0.92918 0.98378 1.00018 1.21452 0.93821 0.96312 1.04106 1.18355 0.91191 0.89903 0.86337 1.19831 1.01622 0.95308 1.28614 0.89494 1.26091 0.94394 1.02228 0.91897 1.69715 1.15228 1.34985 1.18751 0.86139 0.80570 0.80063 0.79654 1.17877 1.18995 1.19385 0.88081 0.88040 0.84225 0.85388 0.85476 0.84772 0.84971 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.06 18.54 41.84 0.78 -11.29 16 2 C 0.30 6.87 14.28 -22.47 -0.32 6.55 16 3 C -0.18 -4.08 5.95 -104.12 -0.62 -4.70 16 4 C -0.03 -0.54 9.74 -39.27 -0.38 -0.93 16 5 C -0.24 -4.36 9.37 -39.18 -0.37 -4.73 16 6 C -0.03 -0.51 5.86 -105.03 -0.62 -1.12 16 7 C -0.01 -0.19 5.88 -104.90 -0.62 -0.80 16 8 C -0.10 -1.60 9.41 -39.25 -0.37 -1.97 16 9 C -0.11 -1.54 9.81 -39.60 -0.39 -1.92 16 10 C -0.05 -0.68 6.32 -39.42 -0.25 -0.93 16 11 Cl -0.09 -1.07 28.95 -51.86 -1.50 -2.57 16 12 C -0.11 -1.48 9.81 -39.60 -0.39 -1.87 16 13 C -0.11 -1.56 9.41 -39.25 -0.37 -1.93 16 14 C -0.14 -2.98 8.06 -38.56 -0.31 -3.29 16 15 C 0.15 3.43 5.73 -104.68 -0.60 2.83 16 16 C -0.43 -10.07 8.58 -37.85 -0.32 -10.39 16 17 H 0.09 2.10 7.37 -52.49 -0.39 1.71 16 18 C 0.08 1.67 5.16 -17.30 -0.09 1.58 16 19 N -0.76 -16.64 10.95 55.56 0.61 -16.03 16 20 Si 0.91 16.62 29.60 -169.99 -5.03 11.59 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 22 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 23 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 24 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 25 H 0.10 1.60 6.09 -52.49 -0.32 1.28 16 26 H 0.14 2.26 6.15 -52.49 -0.32 1.93 16 27 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.13 1.73 6.13 -52.48 -0.32 1.41 16 30 H 0.13 2.83 4.24 -52.48 -0.22 2.60 16 31 H 0.29 5.65 8.30 -40.82 -0.34 5.31 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -24.26 295.19 -8.69 -32.95 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -1.98 Total: 4.52 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -6.01 Total: -23.62 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 1.38 Total: -27.32 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -24.26 -8.69 -32.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088187.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.111 kcal (2) G-P(sol) polarization free energy of solvation -24.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds